Masaru K Nobu

Affiliations

Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan. m.nobu@aist.go.jp.

Publications (42)

Isolation of an archaeon at the prokaryote-eukaryote interface.

Nature

Avec: Hiroyuki Imachi , Masaru K Nobu , Nozomi Nakahara , Yuki Morono , Miyuki Ogawara , Yoshihiro Takaki , Yoshinori Takano , Katsuyuki Uematsu , Tetsuro Ikuta , Motoo Ito , Yohei Matsui , Masayuki Miyazaki , Kazuyoshi Murata , Yumi Saito , Sanae Sakai , Chihong Song , Eiji Tasumi , Yuko Yamanaka , Takashi Yamaguchi , Yoichi Kamagata , Hideyuki Tamaki , Ken Takai

Symbiosis between

mBio

Avec: Kyohei Kuroda , Kyosuke Yamamoto , Ryosuke Nakai , Yuga Hirakata , Kengo Kubota , Masaru K Nobu , Takashi Narihiro

Novel Cross-domain Symbiosis between Candidatus Patescibacteria and Hydrogenotrophic Methanogenic Archaea Methanospirillum Discovered in a Methanogenic Ecosystem.

Microbes and environments

Avec: Kyohei Kuroda , Kengo Kubota , Shuka Kagemasa , Ryosuke Nakai , Yuga Hirakata , Kyosuke Yamamoto , Masaru K Nobu , Takashi Narihiro

Microbiological insights into anaerobic phenol degradation mechanisms and bulking phenomenon in a mesophilic upflow anaerobic sludge blanket reactor in long-term operation.

Water research

Avec: Kyohei Kuroda , Ryota Maeda , Futaba Shinshima , Kampachiro Urasaki , Kengo Kubota , Masaru K Nobu , Taro Q P Noguchi , Hisashi Satoh , Masahito Yamauchi , Takashi Narihiro , Masayoshi Yamada

Bacterial compositions in inhalable particulate matters from indoor and outdoor wastewater treatment processes.

Journal of hazardous materials

Avec: Miaomiao Liu , Masaru K Nobu , Jia Ren , Xiaowei Jin , Gang Hong , Hong Yao

Using DNA-based stable isotope probing to reveal novel propionate- and acetate-oxidizing bacteria in propionate-fed mesophilic anaerobic chemostats.

Scientific reports

Avec: Hui-Zhong Wang , Xiao-Meng Lv , Yue Yi , Dan Zheng , Min Gou , Yong Nie , Bing Hu , Masaru K Nobu , Takashi Narihiro , Yue-Qin Tang

Different inhibitory mechanisms of chlortetracycline and enrofloxacin on mesophilic anaerobic degradation of propionate.

Environmental science and pollution research international

Avec: Min Gou , HuiZhong Wang , Jie Li , ZhaoYong Sun , Yong Nie , Masaru Konishi Nobu , YueQin Tang

Identifying anaerobic amino acids degraders through the comparison of short-term and long-term enrichments.

Environmental microbiology reports

Avec: Ran Mei , Masaru K Nobu , Wen-Tso Liu

Unique H

The ISME journal

Avec: Masaru Konishi Nobu , Ryosuke Nakai , Satoshi Tamazawa , Hiroshi Mori , Atsushi Toyoda , Akira Ijiri , Shino Suzuki , Ken Kurokawa , Yoichi Kamagata , Hideyuki Tamaki

Isolation of a member of the candidate phylum 'Atribacteria' reveals a unique cell membrane structure.

Nature communications

Avec: Taiki Katayama , Masaru K Nobu , Hiroyuki Kusada , Xian-Ying Meng , Naoki Hosogi , Katsuyuki Uematsu , Hideyoshi Yoshioka , Yoichi Kamagata , Hideyuki Tamaki

Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics.

mSystems

Avec: Ryan M Ziels , Masaru K Nobu , Diana Z Sousa

Identification of novel potential acetate-oxidizing bacteria in thermophilic methanogenic chemostats by DNA stable isotope probing.

Applied microbiology and biotechnology

Avec: Dan Zheng , Hui-Zhong Wang , Min Gou , Masaru Konishi Nobu , Takashi Narihiro , Bin Hu , Yong Nie , Yue-Qin Tang

Effects of the Wastewater Flow Rate on Interactions between the Genus Nitrosomonas and Diverse Populations in an Activated Sludge Microbiome.

Microbes and environments

Avec: Takashi Narihiro , Masaru Konishi Nobu , Tomoyuki Hori , Tomo Aoyagi , Yuya Sato , Tomohiro Inaba , Hidenobu Aizawa , Hideyuki Tamaki , Hiroshi Habe

Different Interspecies Electron Transfer Patterns during Mesophilic and Thermophilic Syntrophic Propionate Degradation in Chemostats.

Microbial ecology

Avec: Ya-Ting Chen , Yan Zeng , Hui-Zhong Wang , Dan Zheng , Yoichi Kamagata , Takashi Narihiro , Masaru Konishi Nobu , Yue-Qin Tang

Deep Sequencing Uncovers Caste-Associated Diversity of Symbionts in the Social Ant Camponotus japonicus.

mBio

Avec: Akiko Koto , Masaru Konishi Nobu , Ryo Miyazaki

Ecogenomics Reveals Microbial Metabolic Networks in a Psychrophilic Methanogenic Bioreactor Treating Soy Sauce Production Wastewater.

Microbes and environments

Avec: Kyohei Kuroda , Takashi Narihiro , Masaru K Nobu , Atsushi Tobo , Masahito Yamauchi , Masayoshi Yamada

Draft Genome Sequence of the Extremely Haloalkaliphilic and Homoacetic Bacterium Natroniella acetigena Z-7937

Microbiology resource announcements

Avec: Yan Huang , Masaru K Nobu , Kensuke Igarashi , Souichiro Kato

Metabolism of novel potential syntrophic acetate-oxidizing bacteria in thermophilic methanogenic chemostats.

Applied and environmental microbiology

Avec: Yan Zeng , Dan Zheng , Lan-Peng Li , Miaoxiao Wang , Min Gou , Yoichi Kamagata , Ya-Ting Chen , Masaru Konishi Nobu , Yue-Qin Tang

Novel Syntrophic Isovalerate-Degrading Bacteria and Their Energetic Cooperation with Methanogens in Methanogenic Chemostats.

Environmental science & technology

Avec: Ya-Ting Chen , Yan Zeng , Jie Li , Xin-Yu Zhao , Yue Yi , Min Gou , Yoichi Kamagata , Takashi Narihiro , Masaru Konishi Nobu , Yue-Qin Tang

Koleobacter methoxysyntrophicus gen. nov., sp. nov., a novel anaerobic bacterium isolated from deep subsurface oil field and proposal of Koleobacteraceae fam. nov. and Koleobacterales ord. nov. within the class Clostridia of the phylum Firmicutes.

Systematic and applied microbiology

Avec: Sachiko Sakamoto , Masaru K Nobu , Daisuke Mayumi , Satoshi Tamazawa , Hiroyuki Kusada , Hideharu Yonebayashi , Hiroki Iwama , Masayuki Ikarashi , Tatsuki Wakayama , Haruo Maeda , Susumu Sakata , Tomohiro Tamura , Nobuhiko Nomura , Yoichi Kamagata , Hideyuki Tamaki

A hydrogen-dependent geochemical analogue of primordial carbon and energy metabolism.

Nature ecology & evolution

Avec: Martina Preiner , Kensuke Igarashi , Kamila B Muchowska , Mingquan Yu , Sreejith J Varma , Karl Kleinermanns , Masaru K Nobu , Yoichi Kamagata , Harun Tüysüz , Joseph Moran , William F Martin

Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds.

The ISME journal

Avec: Julia M Kurth , Masaru K Nobu , Hideyuki Tamaki , Nadieh de Jonge , Stefanie Berger , Mike S M Jetten , Kyosuke Yamamoto , Daisuke Mayumi , Susumu Sakata , Liping Bai , Lei Cheng , Jeppe Lund Nielsen , Yoichi Kamagata , Tristan Wagner , Cornelia U Welte

Complete Genome Sequence of "

Microbiology resource announcements

Avec: Yasuo Shiohama , Kazutaka Takeshita , Yuga Hirakata , Masaru K Nobu , Michihiro Ito , Naoya Shinzato

Cultivation of previously uncultured microorganisms with a continuous-flow down-flow hanging sponge (DHS) bioreactor, using a syntrophic archaeon culture obtained from deep marine sediment as a case study.

Nature protocols

Avec: Hiroyuki Imachi , Masaru K Nobu , Masayuki Miyazaki , Eiji Tasumi , Yumi Saito , Sanae Sakai , Miyuki Ogawara , Akiyoshi Ohashi , Ken Takai

The origin and evolution of methanogenesis and

PNAS nexus

Avec: Ran Mei , Masanori Kaneko , Hiroyuki Imachi , Masaru K Nobu

Identification and cultivation of anaerobic bacterial scavengers of dead cells.

The ISME journal

Avec: Yuga Hirakata , Ran Mei , Kana Morinaga , Taiki Katayama , Hideyuki Tamaki , Xian-Ying Meng , Takahiro Watari , Takashi Yamaguchi , Masashi Hatamoto , Masaru K Nobu

A Marine Group A isolate relies on other growing bacteria for cell wall formation.

Nature microbiology

Avec: Taiki Katayama , Masaru K Nobu , Hiroyuki Imachi , Naoki Hosogi , Xian-Ying Meng , Kana Morinaga , Hideyoshi Yoshioka , Hiroshi A Takahashi , Yoichi Kamagata , Hideyuki Tamaki

Illuminating the coevolution of photosynthesis and Bacteria.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Arisa Nishihara , Yusuke Tsukatani , Chihiro Azai , Masaru K Nobu

Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses.

Microbiome

Avec: Masaru K Nobu , Takashi Narihiro , Ran Mei , Yoichi Kamagata , Patrick K H Lee , Po-Heng Lee , Michael J McInerney , Wen-Tso Liu

Response of Isovalerate-Degrading Methanogenic Microbial Community to Inhibitors.

Applied biochemistry and biotechnology

Avec: Jie Li , Hui-Zhong Wang , Yue Yi , Min Gou , Masaru Konishi Nobu , Ya-Ting Chen , Yue-Qin Tang

Response to inhibitory conditions of acetate-degrading methanogenic microbial community.

Journal of bioscience and bioengineering

Avec: Hui-Zhong Wang , Jie Li , Yue Yi , Masaru K Nobu , Takashi Narihiro , Yue-Qin Tang

Aggregatilinea lenta gen. nov., sp. nov., a slow-growing, facultatively anaerobic bacterium isolated from subseafloor sediment, and proposal of the new order Aggregatilineales ord. nov. within the class Anaerolineae of the phylum Chloroflexi.

International journal of systematic and evolutionary microbiology

Avec: Nozomi Nakahara , Masaru K Nobu , Yoshihiro Takaki , Masayuki Miyazaki , Eiji Tasumi , Sanae Sakai , Miyuki Ogawara , Naoko Yoshida , Hideyuki Tamaki , Yuko Yamanaka , Arata Katayama , Takashi Yamaguchi , Ken Takai , Hiroyuki Imachi

Response of Propionate-Degrading Methanogenic Microbial Communities to Inhibitory Conditions.

Applied biochemistry and biotechnology

Avec: Hui-Zhong Wang , Ying-Chun Yan , Min Gou , Yue Yi , Zi-Yuan Xia , Masaru K Nobu , Takashi Narihiro , Yue-Qin Tang

Shaping microbial consortia in coupling glycerol fermentation and carboxylate chain elongation for Co-production of 1,3-propanediol and caproate: Pathways and mechanisms.

Water research

Avec: Ling Leng , Masaru K Nobu , Takashi Narihiro , Peixian Yang , Giin-Yu Amy Tan , Po-Heng Lee

Metagenomic and Metatranscriptomic Analyses Revealed Uncultured Bacteroidales Populations as the Dominant Proteolytic Amino Acid Degraders in Anaerobic Digesters.

Frontiers in microbiology

Avec: Ran Mei , Masaru K Nobu , Takashi Narihiro , Wen-Tso Liu

High-rate cotreatment of purified terephthalate and dimethyl terephthalate manufacturing wastewater by a mesophilic upflow anaerobic sludge blanket reactor and the microbial ecology relevant to aromatic compound degradation.

Water research

Avec: Kyohei Kuroda , Takashi Narihiro , Futaba Shinshima , Mio Yoshida , Haruka Yamaguchi , Hazuki Kurashita , Nozomi Nakahara , Masaru K Nobu , Taro Q P Noguchi , Masahito Yamauchi , Masayoshi Yamada

Draft Genome Sequence of the Alkaliphilic, Lithoautotrophic Homoacetogen Fuchsiella alkaliacetigena Z-7100

Microbiology resource announcements

Avec: Yan Huang , Masaru K Nobu , Kensuke Igarashi , Souichiro Kato

Microscopic and metatranscriptomic analyses revealed unique cross-domain parasitism between phylum

mBio

Avec: Kyohei Kuroda , Meri Nakajima , Ryosuke Nakai , Yuga Hirakata , Shuka Kagemasa , Kengo Kubota , Taro Q P Noguchi , Kyosuke Yamamoto , Hisashi Satoh , Masaru K Nobu , Takashi Narihiro

Development of an internal two-stage upflow anaerobic reactor integrating biostimulation strategies to enhance the degradation of aromatic compounds in wastewater from purified terephthalic acid and dimethyl terephthalate manufacturing processes.

Water research

Avec: Kyohei Kuroda , Maho Takai , Takeo Sekiguchi , Tomoya Ikarashi , Hazuki Kurashita , Meri Nakajima , Masaru K Nobu , Masashi Hatamoto , Takashi Yamaguchi , Yuki Nakaya , Hisashi Satoh , Masahito Yamauchi , Masayoshi Yamada , Takashi Narihiro

Metatranscriptomics-guided genome-scale metabolic reconstruction reveals the carbon flux and trophic interaction in methanogenic communities.

Microbiome

Avec: Weifu Yan , Dou Wang , Yubo Wang , Chunxiao Wang , Xi Chen , Lei Liu , Yulin Wang , Yu-You Li , Yoichi Kamagata , Masaru K Nobu , Tong Zhang

International journal of systematic and evolutionary microbiology

Avec: Hiroyuki Imachi , Masaru K Nobu , Shingo Kato , Yoshihiro Takaki , Masayuki Miyazaki , Makoto Miyata , Miyuki Ogawara , Yumi Saito , Sanae Sakai , Yuhei O Tahara , Yoshinori Takano , Eiji Tasumi , Katsuyuki Uematsu , Toshihiro Yoshimura , Takashi Itoh , Moriya Ohkuma , Ken Takai

International journal of systematic and evolutionary microbiology

Avec: Taiki Katayama , Masaru K Nobu , Yoichi Kamagata , Hideyuki Tamaki

Réseau de co-auteurs

Takashi Narihiro 17 collaborations

Yoichi Kamagata 13 collaborations

Hideyuki Tamaki 10 collaborations

Masaru Konishi Nobu 9 collaborations

Yue-Qin Tang 8 collaborations

Kyohei Kuroda 7 collaborations

Min Gou 7 collaborations

Hiroyuki Imachi 6 collaborations

Hui-Zhong Wang 6 collaborations

Yuga Hirakata 5 collaborations

Yue Yi 5 collaborations

Ran Mei 5 collaborations

Miyuki Ogawara 4 collaborations

Masayuki Miyazaki 4 collaborations

Sanae Sakai 4 collaborations

Eiji Tasumi 4 collaborations

Takashi Yamaguchi 4 collaborations

Ken Takai 4 collaborations

Kyosuke Yamamoto 4 collaborations

Ryosuke Nakai 4 collaborations

Kengo Kubota 4 collaborations

Masahito Yamauchi 4 collaborations

Masayoshi Yamada 4 collaborations

Dan Zheng 4 collaborations

Jie Li 4 collaborations

Taiki Katayama 4 collaborations

Ya-Ting Chen 4 collaborations

Nozomi Nakahara 3 collaborations

Yoshihiro Takaki 3 collaborations

Katsuyuki Uematsu 3 collaborations

Yumi Saito 3 collaborations

Taro Q P Noguchi 3 collaborations

Hisashi Satoh 3 collaborations

Yong Nie 3 collaborations

Wen-Tso Liu 3 collaborations

Xian-Ying Meng 3 collaborations

Yan Zeng 3 collaborations

Kensuke Igarashi 3 collaborations

Yoshinori Takano 2 collaborations

Yuko Yamanaka 2 collaborations

Shuka Kagemasa 2 collaborations

Futaba Shinshima 2 collaborations

Satoshi Tamazawa 2 collaborations

Hiroyuki Kusada 2 collaborations

Naoki Hosogi 2 collaborations

Hideyoshi Yoshioka 2 collaborations

Yan Huang 2 collaborations

Souichiro Kato 2 collaborations

Daisuke Mayumi 2 collaborations

Susumu Sakata 2 collaborations

Kana Morinaga 2 collaborations

Masashi Hatamoto 2 collaborations

Po-Heng Lee 2 collaborations

Hazuki Kurashita 2 collaborations

Meri Nakajima 2 collaborations

Yuki Morono 1 collaboration

Tetsuro Ikuta 1 collaboration

Motoo Ito 1 collaboration

Yohei Matsui 1 collaboration

Kazuyoshi Murata 1 collaboration

Chihong Song 1 collaboration

Ryota Maeda 1 collaboration

Kampachiro Urasaki 1 collaboration

Miaomiao Liu 1 collaboration

Jia Ren 1 collaboration

Xiaowei Jin 1 collaboration

Gang Hong 1 collaboration

Hong Yao 1 collaboration

Xiao-Meng Lv 1 collaboration

Bing Hu 1 collaboration

HuiZhong Wang 1 collaboration

ZhaoYong Sun 1 collaboration

YueQin Tang 1 collaboration

Hiroshi Mori 1 collaboration

Atsushi Toyoda 1 collaboration

Akira Ijiri 1 collaboration

Shino Suzuki 1 collaboration

Ken Kurokawa 1 collaboration

Ryan M Ziels 1 collaboration

Diana Z Sousa 1 collaboration

Bin Hu 1 collaboration

Tomoyuki Hori 1 collaboration

Tomo Aoyagi 1 collaboration

Yuya Sato 1 collaboration

Tomohiro Inaba 1 collaboration

Hidenobu Aizawa 1 collaboration

Hiroshi Habe 1 collaboration

Akiko Koto 1 collaboration

Ryo Miyazaki 1 collaboration

Atsushi Tobo 1 collaboration

Lan-Peng Li 1 collaboration

Miaoxiao Wang 1 collaboration

Xin-Yu Zhao 1 collaboration

Sachiko Sakamoto 1 collaboration

Hideharu Yonebayashi 1 collaboration

Hiroki Iwama 1 collaboration

Masayuki Ikarashi 1 collaboration

Tatsuki Wakayama 1 collaboration

Haruo Maeda 1 collaboration

Tomohiro Tamura 1 collaboration

Nobuhiko Nomura 1 collaboration

Martina Preiner 1 collaboration

Kamila B Muchowska 1 collaboration

Mingquan Yu 1 collaboration

Sreejith J Varma 1 collaboration

Karl Kleinermanns 1 collaboration

Harun Tüysüz 1 collaboration

Joseph Moran 1 collaboration

William F Martin 1 collaboration

Julia M Kurth 1 collaboration

Nadieh de Jonge 1 collaboration

Stefanie Berger 1 collaboration

Mike S M Jetten 1 collaboration

Liping Bai 1 collaboration

Lei Cheng 1 collaboration

Jeppe Lund Nielsen 1 collaboration

Tristan Wagner 1 collaboration

Cornelia U Welte 1 collaboration

Yasuo Shiohama 1 collaboration

Kazutaka Takeshita 1 collaboration

Michihiro Ito 1 collaboration

Naoya Shinzato 1 collaboration

Akiyoshi Ohashi 1 collaboration

Masanori Kaneko 1 collaboration

Takahiro Watari 1 collaboration

Hiroshi A Takahashi 1 collaboration

Arisa Nishihara 1 collaboration

Yusuke Tsukatani 1 collaboration

Chihiro Azai 1 collaboration

Patrick K H Lee 1 collaboration

Michael J McInerney 1 collaboration

Naoko Yoshida 1 collaboration

Arata Katayama 1 collaboration

Ying-Chun Yan 1 collaboration

Zi-Yuan Xia 1 collaboration

Ling Leng 1 collaboration

Peixian Yang 1 collaboration

Giin-Yu Amy Tan 1 collaboration

Mio Yoshida 1 collaboration

Haruka Yamaguchi 1 collaboration

Maho Takai 1 collaboration

Takeo Sekiguchi 1 collaboration

Tomoya Ikarashi 1 collaboration

Yuki Nakaya 1 collaboration

Weifu Yan 1 collaboration

Dou Wang 1 collaboration

Yubo Wang 1 collaboration

Chunxiao Wang 1 collaboration

Xi Chen 1 collaboration

Lei Liu 1 collaboration

Yulin Wang 1 collaboration

Yu-You Li 1 collaboration

Tong Zhang 1 collaboration

Shingo Kato 1 collaboration

Makoto Miyata 1 collaboration

Yuhei O Tahara 1 collaboration

Toshihiro Yoshimura 1 collaboration

Takashi Itoh 1 collaboration

Moriya Ohkuma 1 collaboration