Jett Crowdis

Publications (14)

Rare germline structural variants increase risk for pediatric solid tumors.

bioRxiv : the preprint server for biology

Avec: Riaz Gillani , Ryan L Collins , Jett Crowdis , Amanda Garza , Jill K Jones , Mark Walker , Alba Sanchis-Juan , Chris Whelan , Emma Pierce-Hoffman , Michael Talkowski , Harrison Brand , Kevin Haigis , Jaclyn LoPiccolo , Saud H AlDubayan , Alexander Gusev , Brian D Crompton , Katie A Janeway , Eliezer M Van Allen

Biologically informed deep neural network for prostate cancer discovery.

Nature

Avec: Haitham A Elmarakeby , Justin Hwang , Rand Arafeh , Jett Crowdis , Sydney Gang , David Liu , Saud H AlDubayan , Keyan Salari , Steven Kregel , Camden Richter , Taylor E Arnoff , Jihye Park , William C Hahn , Eliezer M Van Allen

Gene Fusions Create Partner and Collateral Dependencies Essential to Cancer Cell Survival.

Cancer research

Avec: Riaz Gillani , Bo Kyung A Seong , Jett Crowdis , Jake R Conway , Neekesh V Dharia , Saif Alimohamed , Brian J Haas , Kyuho Han , Jihye Park , Felix Dietlein , Meng Xiao He , Alma Imamovic , Clement Ma , Michael C Bassik , Jesse S Boehm , Francisca Vazquez , Alexander Gusev , David Liu , Katherine A Janeway , James M McFarland , Kimberly Stegmaier , Eliezer M Van Allen

Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts.

Oncogene

Avec: Hendrik J Kuiken , Sabin Dhakal , Laura M Selfors , Chandler M Friend , Tian Zhang , Maurizio Callari , Ron C J Schackmann , G Kenneth Gray , Jett Crowdis , Hyo-Eun C Bhang , Timour Baslan , Frank Stegmeier , Steven P Gygi , Carlos Caldas , Joan S Brugge

Molecular features of exceptional response to neoadjuvant anti-androgen therapy in high-risk localized prostate cancer.

Cell reports

Avec: Alok K Tewari , Alexander T M Cheung , Jett Crowdis , Jake R Conway , Sabrina Y Camp , Stephanie A Wankowicz , Dimitri G Livitz , Jihye Park , Rosina T Lis , Alice Bosma-Moody , Meng Xiao He , Saud H AlDubayan , Zhenwei Zhang , Rana R McKay , Ignaty Leshchiner , Myles Brown , Steven P Balk , Gad Getz , Mary-Ellen Taplin , Eliezer M Van Allen

Glutathione supports lipid abundance

bioRxiv : the preprint server for biology

Avec: Gloria Asantewaa , Emily T Tuttle , Nathan P Ward , Yun Pyo Kang , Yumi Kim , Madeline E Kavanagh , Nomeda Girnius , Ying Chen , Renae Duncan , Katherine Rodriguez , Fabio Hecht , Marco Zocchi , Leonid Smorodintsev-Schiller , TashJaé Q Scales , Kira Taylor , Fatemeh Alimohammadi , Zachary R Sechrist , Diana Agostini-Vulaj , Xenia L Schafer , Hayley Chang , Zachary Smith , Thomas N O'Connor , Sarah Whelan , Laura M Selfors , Jett Crowdis , G Kenneth Gray , Roderick T Bronson , Dirk Brenner , Alessandro Rufini , Robert T Dirksen , Aram F Hezel , Aaron R Huber , Josh Munger , Benjamin F Cravatt , Vasilis Vasiliou , Calvin L Cole , Gina M DeNicola , Isaac S Harris

Somatic structural variants drive distinct modes of oncogenesis in melanoma.

The Journal of clinical investigation

Avec: Jake R Conway , Riaz Gillani , Jett Crowdis , Brendan Reardon , Jihye Park , Seung Hun Han , Breanna M Titchen , Mouadh Benamar , Rizwan Haq , Eliezer M Van Allen

Glutathione synthesis in the mouse liver supports lipid abundance through NRF2 repression.

Nature communications

Avec: Gloria Asantewaa , Emily T Tuttle , Nathan P Ward , Yun Pyo Kang , Yumi Kim , Madeline E Kavanagh , Nomeda Girnius , Ying Chen , Katherine Rodriguez , Fabio Hecht , Marco Zocchi , Leonid Smorodintsev-Schiller , TashJaé Q Scales , Kira Taylor , Fatemeh Alimohammadi , Renae P Duncan , Zachary R Sechrist , Diana Agostini-Vulaj , Xenia L Schafer , Hayley Chang , Zachary R Smith , Thomas N O'Connor , Sarah Whelan , Laura M Selfors , Jett Crowdis , G Kenneth Gray , Roderick T Bronson , Dirk Brenner , Alessandro Rufini , Robert T Dirksen , Aram F Hezel , Aaron R Huber , Joshua Munger , Benjamin F Cravatt , Vasilis Vasiliou , Calvin L Cole , Gina M DeNicola , Isaac S Harris

CoMut: visualizing integrated molecular information with comutation plots.

Bioinformatics (Oxford, England)

Avec: Jett Crowdis , Meng Xiao He , Brendan Reardon , Eliezer M Van Allen

Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer.

Nature communications

Avec: Paloma Cejas , Yingtian Xie , Alba Font-Tello , Klothilda Lim , Sudeepa Syamala , Xintao Qiu , Alok K Tewari , Neel Shah , Holly M Nguyen , Radhika A Patel , Lisha Brown , Ilsa Coleman , Wenzel M Hackeng , Lodewijk Brosens , Koen M A Dreijerink , Leigh Ellis , Sarah Abou Alaiwi , Ji-Heui Seo , Sylvan Baca , Himisha Beltran , Francesca Khani , Mark Pomerantz , Alessandra Dall'Agnese , Jett Crowdis , Eliezer M Van Allen , Joaquim Bellmunt , Colm Morrisey , Peter S Nelson , James DeCaprio , Anna Farago , Nicholas Dyson , Benjamin Drapkin , X Shirley Liu , Matthew Freedman , Michael C Haffner , Eva Corey , Myles Brown , Henry W Long

Transcriptional mediators of treatment resistance in lethal prostate cancer.

Nature medicine

Avec: Meng Xiao He , Michael S Cuoco , Jett Crowdis , Alice Bosma-Moody , Zhenwei Zhang , Kevin Bi , Abhay Kanodia , Mei-Ju Su , Sheng-Yu Ku , Maria Mica Garcia , Amalia R Sweet , Christopher Rodman , Laura DelloStritto , Rebecca Silver , John Steinharter , Parin Shah , Benjamin Izar , Nathan C Walk , Kelly P Burke , Ziad Bakouny , Alok K Tewari , David Liu , Sabrina Y Camp , Natalie I Vokes , Keyan Salari , Jihye Park , Sébastien Vigneau , Lawrence Fong , Joshua W Russo , Xin Yuan , Steven P Balk , Himisha Beltran , Orit Rozenblatt-Rosen , Aviv Regev , Asaf Rotem , Mary-Ellen Taplin , Eliezer M Van Allen

A patient-driven clinicogenomic partnership for metastatic prostate cancer.

Cell genomics

Avec: Jett Crowdis , Sara Balch , Lauren Sterlin , Beena S Thomas , Sabrina Y Camp , Michael Dunphy , Elana Anastasio , Shahrayz Shah , Alyssa L Damon , Rafael Ramos , Delia M Sosa , Ilan K Small , Brett N Tomson , Colleen M Nguyen , Mary McGillicuddy , Parker S Chastain , Meng Xiao He , Alexander T M Cheung , Stephanie Wankowicz , Alok K Tewari , Dewey Kim , Saud H AlDubayan , Ayanah Dowdye , Benjamin Zola , Joel Nowak , Jan Manarite , Idola Henry Gunn , Bryce Olson , Eric S Lander , Corrie A Painter , Nikhil Wagle , Eliezer M Van Allen

Analysis of evolutionary dynamics and clonal architecture in prostate cancer.

bioRxiv : the preprint server for biology

Avec: Jake R Conway , Alok K Tewari , Sabrina Y Camp , Seunghun Han , Jett Crowdis , Meng Xiao He , Yaw A Nyame , Saud H AlDubayan , Nikolaus Schultz , Zoltan Szallasi , Mark M Pomerantz , Matthew L Freedman , Lawrence Fong , Peter S Nelson , Myles Brown , Keyan Salari , Eliezer Van Allen

Overcoming Barriers to Tumor Genomic Profiling through Direct-to-Patient Outreach.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Seyram A Doe-Tetteh , Sabrina Y Camp , Dalicia Reales , Jett Crowdis , Anne Marie Noronha , Bernadette Wolff , Tina Alano , Jesse Galle , S Duygu Selcuklu , Agnes Viale , Nicholas D Socci , Ying L Liu , William P Tew , Carol Aghajanian , Marc Ladanyi , Meng Xiao He , Saud H AlDubayan , Roei David Mazor , Ofer Shpilberg , Oshrat Hershkovitz-Rokah , Jose A Riancho , Jose L Hernandez , M Carmen Gonzalez-Vela , Justin J Buthorn , Manda Wilson , Amy E Webber , Mariko Yabe , Kseniya Petrova-Drus , Marc Rosenblum , Benjamin H Durham , Omar Abdel-Wahab , Michael F Berger , Mark T A Donoghue , Andrew L Kung , Julia Glade Bender , Neerav N Shukla , Samuel A Funt , Ahmet Dogan , Robert A Soslow , Hikmat Al-Ahmadie , Darren R Feldman , Eliezer M Van Allen , Eli L Diamond , David B Solit

Réseau de co-auteurs

Eliezer M Van Allen 10 collaborations

Meng Xiao He 7 collaborations

Saud H AlDubayan 6 collaborations

Jihye Park 5 collaborations

Alok K Tewari 5 collaborations

Sabrina Y Camp 5 collaborations

Jake R Conway 4 collaborations

Riaz Gillani 3 collaborations

David Liu 3 collaborations

Keyan Salari 3 collaborations

Laura M Selfors 3 collaborations

G Kenneth Gray 3 collaborations

Myles Brown 3 collaborations

Alexander Gusev 2 collaborations

Alexander T M Cheung 2 collaborations

Alice Bosma-Moody 2 collaborations

Zhenwei Zhang 2 collaborations

Steven P Balk 2 collaborations

Mary-Ellen Taplin 2 collaborations

Gloria Asantewaa 2 collaborations

Emily T Tuttle 2 collaborations

Nathan P Ward 2 collaborations

Yun Pyo Kang 2 collaborations

Yumi Kim 2 collaborations

Madeline E Kavanagh 2 collaborations

Nomeda Girnius 2 collaborations

Ying Chen 2 collaborations

Katherine Rodriguez 2 collaborations

Fabio Hecht 2 collaborations

Marco Zocchi 2 collaborations

Leonid Smorodintsev-Schiller 2 collaborations

TashJaé Q Scales 2 collaborations

Kira Taylor 2 collaborations

Fatemeh Alimohammadi 2 collaborations

Zachary R Sechrist 2 collaborations

Diana Agostini-Vulaj 2 collaborations

Xenia L Schafer 2 collaborations

Hayley Chang 2 collaborations

Thomas N O'Connor 2 collaborations

Sarah Whelan 2 collaborations

Roderick T Bronson 2 collaborations

Dirk Brenner 2 collaborations

Alessandro Rufini 2 collaborations

Robert T Dirksen 2 collaborations

Aram F Hezel 2 collaborations

Aaron R Huber 2 collaborations

Benjamin F Cravatt 2 collaborations

Vasilis Vasiliou 2 collaborations

Calvin L Cole 2 collaborations

Gina M DeNicola 2 collaborations

Isaac S Harris 2 collaborations

Brendan Reardon 2 collaborations

Himisha Beltran 2 collaborations

Peter S Nelson 2 collaborations

Lawrence Fong 2 collaborations

Ryan L Collins 1 collaboration

Amanda Garza 1 collaboration

Jill K Jones 1 collaboration

Mark Walker 1 collaboration

Alba Sanchis-Juan 1 collaboration

Chris Whelan 1 collaboration

Emma Pierce-Hoffman 1 collaboration

Michael Talkowski 1 collaboration

Harrison Brand 1 collaboration

Kevin Haigis 1 collaboration

Jaclyn LoPiccolo 1 collaboration

Brian D Crompton 1 collaboration

Katie A Janeway 1 collaboration

Haitham A Elmarakeby 1 collaboration

Justin Hwang 1 collaboration

Rand Arafeh 1 collaboration

Sydney Gang 1 collaboration

Steven Kregel 1 collaboration

Camden Richter 1 collaboration

Taylor E Arnoff 1 collaboration

William C Hahn 1 collaboration

Bo Kyung A Seong 1 collaboration

Neekesh V Dharia 1 collaboration

Saif Alimohamed 1 collaboration

Brian J Haas 1 collaboration

Kyuho Han 1 collaboration

Felix Dietlein 1 collaboration

Alma Imamovic 1 collaboration

Clement Ma 1 collaboration

Michael C Bassik 1 collaboration

Jesse S Boehm 1 collaboration

Francisca Vazquez 1 collaboration

Katherine A Janeway 1 collaboration

James M McFarland 1 collaboration

Kimberly Stegmaier 1 collaboration

Hendrik J Kuiken 1 collaboration

Sabin Dhakal 1 collaboration

Chandler M Friend 1 collaboration

Tian Zhang 1 collaboration

Maurizio Callari 1 collaboration

Ron C J Schackmann 1 collaboration

Hyo-Eun C Bhang 1 collaboration

Timour Baslan 1 collaboration

Frank Stegmeier 1 collaboration

Steven P Gygi 1 collaboration

Carlos Caldas 1 collaboration

Joan S Brugge 1 collaboration

Stephanie A Wankowicz 1 collaboration

Dimitri G Livitz 1 collaboration

Rosina T Lis 1 collaboration

Rana R McKay 1 collaboration

Ignaty Leshchiner 1 collaboration

Gad Getz 1 collaboration

Renae Duncan 1 collaboration

Zachary Smith 1 collaboration

Josh Munger 1 collaboration

Seung Hun Han 1 collaboration

Breanna M Titchen 1 collaboration

Mouadh Benamar 1 collaboration

Rizwan Haq 1 collaboration

Renae P Duncan 1 collaboration

Zachary R Smith 1 collaboration

Joshua Munger 1 collaboration

Paloma Cejas 1 collaboration

Yingtian Xie 1 collaboration

Alba Font-Tello 1 collaboration

Klothilda Lim 1 collaboration

Sudeepa Syamala 1 collaboration

Xintao Qiu 1 collaboration

Neel Shah 1 collaboration

Holly M Nguyen 1 collaboration

Radhika A Patel 1 collaboration

Lisha Brown 1 collaboration

Ilsa Coleman 1 collaboration

Wenzel M Hackeng 1 collaboration

Lodewijk Brosens 1 collaboration

Koen M A Dreijerink 1 collaboration

Leigh Ellis 1 collaboration

Sarah Abou Alaiwi 1 collaboration

Ji-Heui Seo 1 collaboration

Sylvan Baca 1 collaboration

Francesca Khani 1 collaboration

Mark Pomerantz 1 collaboration

Alessandra Dall'Agnese 1 collaboration

Joaquim Bellmunt 1 collaboration

Colm Morrisey 1 collaboration

James DeCaprio 1 collaboration

Anna Farago 1 collaboration

Nicholas Dyson 1 collaboration

Benjamin Drapkin 1 collaboration

X Shirley Liu 1 collaboration

Matthew Freedman 1 collaboration

Michael C Haffner 1 collaboration

Eva Corey 1 collaboration

Henry W Long 1 collaboration

Michael S Cuoco 1 collaboration

Kevin Bi 1 collaboration

Abhay Kanodia 1 collaboration

Mei-Ju Su 1 collaboration

Sheng-Yu Ku 1 collaboration

Maria Mica Garcia 1 collaboration

Amalia R Sweet 1 collaboration

Christopher Rodman 1 collaboration

Laura DelloStritto 1 collaboration

Rebecca Silver 1 collaboration

John Steinharter 1 collaboration

Parin Shah 1 collaboration

Benjamin Izar 1 collaboration

Nathan C Walk 1 collaboration

Kelly P Burke 1 collaboration

Ziad Bakouny 1 collaboration

Natalie I Vokes 1 collaboration

Sébastien Vigneau 1 collaboration

Joshua W Russo 1 collaboration

Xin Yuan 1 collaboration

Orit Rozenblatt-Rosen 1 collaboration

Aviv Regev 1 collaboration

Asaf Rotem 1 collaboration

Sara Balch 1 collaboration

Lauren Sterlin 1 collaboration

Beena S Thomas 1 collaboration

Michael Dunphy 1 collaboration

Elana Anastasio 1 collaboration

Shahrayz Shah 1 collaboration

Alyssa L Damon 1 collaboration

Rafael Ramos 1 collaboration

Delia M Sosa 1 collaboration

Ilan K Small 1 collaboration

Brett N Tomson 1 collaboration

Colleen M Nguyen 1 collaboration

Mary McGillicuddy 1 collaboration

Parker S Chastain 1 collaboration

Stephanie Wankowicz 1 collaboration

Dewey Kim 1 collaboration

Ayanah Dowdye 1 collaboration

Benjamin Zola 1 collaboration

Joel Nowak 1 collaboration

Jan Manarite 1 collaboration

Idola Henry Gunn 1 collaboration

Bryce Olson 1 collaboration

Eric S Lander 1 collaboration

Corrie A Painter 1 collaboration

Nikhil Wagle 1 collaboration

Seunghun Han 1 collaboration

Yaw A Nyame 1 collaboration

Nikolaus Schultz 1 collaboration

Zoltan Szallasi 1 collaboration

Mark M Pomerantz 1 collaboration

Matthew L Freedman 1 collaboration

Eliezer Van Allen 1 collaboration

Seyram A Doe-Tetteh 1 collaboration

Dalicia Reales 1 collaboration

Anne Marie Noronha 1 collaboration

Bernadette Wolff 1 collaboration

Tina Alano 1 collaboration

Jesse Galle 1 collaboration

S Duygu Selcuklu 1 collaboration

Agnes Viale 1 collaboration

Nicholas D Socci 1 collaboration

Ying L Liu 1 collaboration

William P Tew 1 collaboration

Carol Aghajanian 1 collaboration

Marc Ladanyi 1 collaboration

Roei David Mazor 1 collaboration

Ofer Shpilberg 1 collaboration

Oshrat Hershkovitz-Rokah 1 collaboration

Jose A Riancho 1 collaboration

Jose L Hernandez 1 collaboration

M Carmen Gonzalez-Vela 1 collaboration

Justin J Buthorn 1 collaboration

Manda Wilson 1 collaboration

Amy E Webber 1 collaboration

Mariko Yabe 1 collaboration

Kseniya Petrova-Drus 1 collaboration

Marc Rosenblum 1 collaboration

Benjamin H Durham 1 collaboration

Omar Abdel-Wahab 1 collaboration

Michael F Berger 1 collaboration

Mark T A Donoghue 1 collaboration

Andrew L Kung 1 collaboration

Julia Glade Bender 1 collaboration

Neerav N Shukla 1 collaboration

Samuel A Funt 1 collaboration

Ahmet Dogan 1 collaboration

Robert A Soslow 1 collaboration

Hikmat Al-Ahmadie 1 collaboration

Darren R Feldman 1 collaboration

Eli L Diamond 1 collaboration

David B Solit 1 collaboration