Ivica Letunic

Affiliations

Biobyte Solutions, Heidelberg, Germany.

ORCID: http://orcid.org/0000-0003-3560-4288

Publications (20)

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis.

Nature

Avec: Sara Vieira-Silva , Gwen Falony , Eugeni Belda , Trine Nielsen , Judith Aron-Wisnewsky , Rima Chakaroun , Sofia K Forslund , Karen Assmann , Mireia Valles-Colomer , Thi Thuy Duyen Nguyen , Sebastian Proost , Edi Prifti , Valentina Tremaroli , Nicolas Pons , Emmanuelle Le Chatelier , Fabrizio Andreelli , Jean-Phillippe Bastard , Luis Pedro Coelho , Nathalie Galleron , Tue H Hansen , Jean-Sébastien Hulot , Christian Lewinter , Helle K Pedersen , Benoit Quinquis , Christine Rouault , Hugo Roume , Joe-Elie Salem , Nadja B Søndertoft , Sothea Touch , Auteur inconnu , Marc-Emmanuel Dumas , Stanislav Dusko Ehrlich , Pilar Galan , Jens P Gøtze , Torben Hansen , Jens J Holst , Lars Køber , Ivica Letunic , Jens Nielsen , Jean-Michel Oppert , Michael Stumvoll , Henrik Vestergaard , Jean-Daniel Zucker , Peer Bork , Oluf Pedersen , Fredrik Bäckhed , Karine Clément , Jeroen Raes

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.

Nucleic acids research

Avec: Thomas S B Schmidt , Anthony Fullam , Pamela Ferretti , Askarbek Orakov , Oleksandr M Maistrenko , Hans-Joachim Ruscheweyh , Ivica Letunic , Yiqian Duan , Thea Van Rossum , Shinichi Sunagawa , Daniel R Mende , Robert D Finn , Michael Kuhn , Luis Pedro Coelho , Peer Bork

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation.

Nucleic acids research

Avec: Ivica Letunic , Peer Bork

SMART: recent updates, new developments and status in 2020.

Nucleic acids research

Avec: Ivica Letunic , Supriya Khedkar , Peer Bork

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.

Nucleic acids research

Avec: Jaime Huerta-Cepas , Damian Szklarczyk , Davide Heller , Ana Hernández-Plaza , Sofia K Forslund , Helen Cook , Daniel R Mende , Ivica Letunic , Thomas Rattei , Lars J Jensen , Christian von Mering , Peer Bork

Combinatorial, additive and dose-dependent drug-microbiome associations.

Nature

Avec: Sofia K Forslund , Rima Chakaroun , Maria Zimmermann-Kogadeeva , Lajos Markó , Judith Aron-Wisnewsky , Trine Nielsen , Lucas Moitinho-Silva , Thomas S B Schmidt , Gwen Falony , Sara Vieira-Silva , Solia Adriouch , Renato J Alves , Karen Assmann , Jean-Philippe Bastard , Till Birkner , Robert Caesar , Julien Chilloux , Luis Pedro Coelho , Leopold Fezeu , Nathalie Galleron , Gerard Helft , Richard Isnard , Boyang Ji , Michael Kuhn , Emmanuelle Le Chatelier , Antonis Myridakis , Lisa Olsson , Nicolas Pons , Edi Prifti , Benoit Quinquis , Hugo Roume , Joe-Elie Salem , Nataliya Sokolovska , Valentina Tremaroli , Mireia Valles-Colomer , Christian Lewinter , Nadja B Søndertoft , Helle Krogh Pedersen , Tue H Hansen , Auteur inconnu , Jens Peter Gøtze , Lars Køber , Henrik Vestergaard , Torben Hansen , Jean-Daniel Zucker , Serge Hercberg , Jean-Michel Oppert , Ivica Letunic , Jens Nielsen , Fredrik Bäckhed , S Dusko Ehrlich , Marc-Emmanuel Dumas , Jeroen Raes , Oluf Pedersen , Karine Clément , Michael Stumvoll , Peer Bork

eggNOG 6.0: enabling comparative genomics across 12 535 organisms.

Nucleic acids research

Avec: Ana Hernández-Plaza , Damian Szklarczyk , Jorge Botas , Carlos P Cantalapiedra , Joaquín Giner-Lamia , Daniel R Mende , Rebecca Kirsch , Thomas Rattei , Ivica Letunic , Lars J Jensen , Peer Bork , Christian von Mering , Jaime Huerta-Cepas

Interactive Tree Of Life (iTOL) v4: recent updates and new developments.

Nucleic acids research

Avec: Ivica Letunic , Peer Bork

INSIdE NANO: a systems biology framework to contextualize the mechanism-of-action of engineered nanomaterials.

Scientific reports

Avec: Angela Serra , Ivica Letunic , Vittorio Fortino , Richard D Handy , Bengt Fadeel , Roberto Tagliaferri , Dario Greco

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Nucleic acids research

Avec: Alex L Mitchell , Teresa K Attwood , Patricia C Babbitt , Matthias Blum , Peer Bork , Alan Bridge , Shoshana D Brown , Hsin-Yu Chang , Sara El-Gebali , Matthew I Fraser , Julian Gough , David R Haft , Hongzhan Huang , Ivica Letunic , Rodrigo Lopez , Aurélien Luciani , Fabio Madeira , Aron Marchler-Bauer , Huaiyu Mi , Darren A Natale , Marco Necci , Gift Nuka , Christine Orengo , Arun P Pandurangan , Typhaine Paysan-Lafosse , Sebastien Pesseat , Simon C Potter , Matloob A Qureshi , Neil D Rawlings , Nicole Redaschi , Lorna J Richardson , Catherine Rivoire , Gustavo A Salazar , Amaia Sangrador-Vegas , Christian J A Sigrist , Ian Sillitoe , Granger G Sutton , Narmada Thanki , Paul D Thomas , Silvio C E Tosatto , Siew-Yit Yong , Robert D Finn

The InterPro protein families and domains database: 20 years on.

Nucleic acids research

Avec: Matthias Blum , Hsin-Yu Chang , Sara Chuguransky , Tiago Grego , Swaathi Kandasaamy , Alex Mitchell , Gift Nuka , Typhaine Paysan-Lafosse , Matloob Qureshi , Shriya Raj , Lorna Richardson , Gustavo A Salazar , Lowri Williams , Peer Bork , Alan Bridge , Julian Gough , Daniel H Haft , Ivica Letunic , Aron Marchler-Bauer , Huaiyu Mi , Darren A Natale , Marco Necci , Christine A Orengo , Arun P Pandurangan , Catherine Rivoire , Christian J A Sigrist , Ian Sillitoe , Narmada Thanki , Paul D Thomas , Silvio C E Tosatto , Cathy H Wu , Alex Bateman , Robert D Finn

Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool.

Nucleic acids research

Avec: Ivica Letunic , Peer Bork

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.

Nucleic acids research

Avec: Anthony Fullam , Ivica Letunic , Thomas S B Schmidt , Quinten R Ducarmon , Nicolai Karcher , Supriya Khedkar , Michael Kuhn , Martin Larralde , Oleksandr M Maistrenko , Lukas Malfertheiner , Alessio Milanese , Joao Frederico Matias Rodrigues , Claudia Sanchis-López , Christian Schudoma , Damian Szklarczyk , Shinichi Sunagawa , Georg Zeller , Jaime Huerta-Cepas , Christian von Mering , Peer Bork , Daniel R Mende

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.

Nucleic acids research

Avec: Daniel R Mende , Ivica Letunic , Oleksandr M Maistrenko , Thomas S B Schmidt , Alessio Milanese , Lucas Paoli , Ana Hernández-Plaza , Askarbek N Orakov , Sofia K Forslund , Shinichi Sunagawa , Georg Zeller , Jaime Huerta-Cepas , Luis Pedro Coelho , Peer Bork

Towards the biogeography of prokaryotic genes.

Nature

Avec: Luis Pedro Coelho , Renato Alves , Álvaro Rodríguez Del Río , Pernille Neve Myers , Carlos P Cantalapiedra , Joaquín Giner-Lamia , Thomas Sebastian Schmidt , Daniel R Mende , Askarbek Orakov , Ivica Letunic , Falk Hildebrand , Thea Van Rossum , Sofia K Forslund , Supriya Khedkar , Oleksandr M Maistrenko , Shaojun Pan , Longhao Jia , Pamela Ferretti , Shinichi Sunagawa , Xing-Ming Zhao , Henrik Bjørn Nielsen , Jaime Huerta-Cepas , Peer Bork

Impairment of gut microbial biotin metabolism and host biotin status in severe obesity: effect of biotin and prebiotic supplementation on improved metabolism.

Gut

Avec: Eugeni Belda , Lise Voland , Valentina Tremaroli , Gwen Falony , Solia Adriouch , Karen E Assmann , Edi Prifti , Judith Aron-Wisnewsky , Jean Debédat , Tiphaine Le Roy , Trine Nielsen , Chloé Amouyal , Sébastien André , Fabrizio Andreelli , Matthias Blüher , Rima Chakaroun , Julien Chilloux , Luis Pedro Coelho , Maria Carlota Dao , Promi Das , Soraya Fellahi , Sofia Forslund , Nathalie Galleron , Tue H Hansen , Bridget Holmes , Boyang Ji , Helle Krogh Pedersen , Phuong Le , Emmanuelle Le Chatelier , Christian Lewinter , Louise Mannerås-Holm , Florian Marquet , Antonis Myridakis , Veronique Pelloux , Nicolas Pons , Benoit Quinquis , Christine Rouault , Hugo Roume , Joe-Elie Salem , Nataliya Sokolovska , Nadja B Søndertoft , Sothea Touch , Sara Vieira-Silva , Auteur inconnu , Pilar Galan , Jens Holst , Jens Peter Gøtze , Lars Køber , Henrik Vestergaard , Torben Hansen , Serge Hercberg , Jean-Michel Oppert , Jens Nielsen , Ivica Letunic , Marc-Emmanuel Dumas , Michael Stumvoll , Oluf Borbye Pedersen , Peer Bork , Stanislav Dusko Ehrlich , Jean-Daniel Zucker , Fredrik Bäckhed , Jeroen Raes , Karine Clément

eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.

Molecular biology and evolution

Avec: Carlos P Cantalapiedra , Ana Hernández-Plaza , Ivica Letunic , Peer Bork , Jaime Huerta-Cepas

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology.

Nature communications

Avec: Antonio Molinaro , Pierre Bel Lassen , Marcus Henricsson , Hao Wu , Solia Adriouch , Eugeni Belda , Rima Chakaroun , Trine Nielsen , Per-Olof Bergh , Christine Rouault , Sébastien André , Florian Marquet , Fabrizio Andreelli , Joe-Elie Salem , Karen Assmann , Jean-Philippe Bastard , Sofia Forslund , Emmanuelle Le Chatelier , Gwen Falony , Nicolas Pons , Edi Prifti , Benoit Quinquis , Hugo Roume , Sara Vieira-Silva , Tue H Hansen , Helle Krogh Pedersen , Christian Lewinter , Nadja B Sønderskov , Auteur inconnu , Lars Køber , Henrik Vestergaard , Torben Hansen , Jean-Daniel Zucker , Pilar Galan , Marc-Emmanuel Dumas , Jeroen Raes , Jean-Michel Oppert , Ivica Letunic , Jens Nielsen , Peer Bork , S Dusko Ehrlich , Michael Stumvoll , Oluf Pedersen , Judith Aron-Wisnewsky , Karine Clément , Fredrik Bäckhed

Microbiome and metabolome features of the cardiometabolic disease spectrum.

Nature medicine

Avec: Sebastien Fromentin , Sofia K Forslund , Kanta Chechi , Judith Aron-Wisnewsky , Rima Chakaroun , Trine Nielsen , Valentina Tremaroli , Boyang Ji , Edi Prifti , Antonis Myridakis , Julien Chilloux , Petros Andrikopoulos , Yong Fan , Michael T Olanipekun , Renato Alves , Solia Adiouch , Noam Bar , Yeela Talmor-Barkan , Eugeni Belda , Robert Caesar , Luis Pedro Coelho , Gwen Falony , Soraya Fellahi , Pilar Galan , Nathalie Galleron , Gerard Helft , Lesley Hoyles , Richard Isnard , Emmanuelle Le Chatelier , Hanna Julienne , Lisa Olsson , Helle Krogh Pedersen , Nicolas Pons , Benoit Quinquis , Christine Rouault , Hugo Roume , Joe-Elie Salem , Thomas S B Schmidt , Sara Vieira-Silva , Peishun Li , Maria Zimmermann-Kogadeeva , Christian Lewinter , Nadja B Søndertoft , Tue H Hansen , Dominique Gauguier , Jens Peter Gøtze , Lars Køber , Ran Kornowski , Henrik Vestergaard , Torben Hansen , Jean-Daniel Zucker , Serge Hercberg , Ivica Letunic , Fredrik Bäckhed , Jean-Michel Oppert , Jens Nielsen , Jeroen Raes , Peer Bork , Michael Stumvoll , Eran Segal , Karine Clément , Marc-Emmanuel Dumas , S Dusko Ehrlich , Oluf Pedersen

Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes.

Nucleic acids research

Avec: Supriya Khedkar , Georgy Smyshlyaev , Ivica Letunic , Oleksandr M Maistrenko , Luis Pedro Coelho , Askarbek Orakov , Sofia K Forslund , Falk Hildebrand , Mechthild Luetge , Thomas S B Schmidt , Orsolya Barabas , Peer Bork

Réseau de co-auteurs

Peer Bork 19 collaborations

Luis Pedro Coelho 8 collaborations

Sofia K Forslund 7 collaborations

Thomas S B Schmidt 6 collaborations

Daniel R Mende 6 collaborations

Jaime Huerta-Cepas 6 collaborations

Sara Vieira-Silva 5 collaborations

Gwen Falony 5 collaborations

Trine Nielsen 5 collaborations

Judith Aron-Wisnewsky 5 collaborations

Rima Chakaroun 5 collaborations

Edi Prifti 5 collaborations

Nicolas Pons 5 collaborations

Emmanuelle Le Chatelier 5 collaborations

Tue H Hansen 5 collaborations

Christian Lewinter 5 collaborations

Benoit Quinquis 5 collaborations

Hugo Roume 5 collaborations

Joe-Elie Salem 5 collaborations

Marc-Emmanuel Dumas 5 collaborations

Torben Hansen 5 collaborations

Lars Køber 5 collaborations

Jens Nielsen 5 collaborations

Jean-Michel Oppert 5 collaborations

Michael Stumvoll 5 collaborations

Henrik Vestergaard 5 collaborations

Jean-Daniel Zucker 5 collaborations

Fredrik Bäckhed 5 collaborations

Karine Clément 5 collaborations

Jeroen Raes 5 collaborations

Oleksandr M Maistrenko 5 collaborations

Eugeni Belda 4 collaborations

Valentina Tremaroli 4 collaborations

Nathalie Galleron 4 collaborations

Christine Rouault 4 collaborations

Nadja B Søndertoft 4 collaborations

None None 4 collaborations

Pilar Galan 4 collaborations

Oluf Pedersen 4 collaborations

Shinichi Sunagawa 4 collaborations

Supriya Khedkar 4 collaborations

Ana Hernández-Plaza 4 collaborations

Helle Krogh Pedersen 4 collaborations

Karen Assmann 3 collaborations

Fabrizio Andreelli 3 collaborations

Askarbek Orakov 3 collaborations

Robert D Finn 3 collaborations

Michael Kuhn 3 collaborations

Damian Szklarczyk 3 collaborations

Christian von Mering 3 collaborations

Solia Adriouch 3 collaborations

Julien Chilloux 3 collaborations

Boyang Ji 3 collaborations

Antonis Myridakis 3 collaborations

Jens Peter Gøtze 3 collaborations

Serge Hercberg 3 collaborations

S Dusko Ehrlich 3 collaborations

Carlos P Cantalapiedra 3 collaborations

Mireia Valles-Colomer 2 collaborations

Sothea Touch 2 collaborations

Stanislav Dusko Ehrlich 2 collaborations

Anthony Fullam 2 collaborations

Pamela Ferretti 2 collaborations

Thea Van Rossum 2 collaborations

Thomas Rattei 2 collaborations

Lars J Jensen 2 collaborations

Maria Zimmermann-Kogadeeva 2 collaborations

Jean-Philippe Bastard 2 collaborations

Robert Caesar 2 collaborations

Gerard Helft 2 collaborations

Richard Isnard 2 collaborations

Lisa Olsson 2 collaborations

Nataliya Sokolovska 2 collaborations

Joaquín Giner-Lamia 2 collaborations

Matthias Blum 2 collaborations

Alan Bridge 2 collaborations

Hsin-Yu Chang 2 collaborations

Julian Gough 2 collaborations

Aron Marchler-Bauer 2 collaborations

Huaiyu Mi 2 collaborations

Darren A Natale 2 collaborations

Marco Necci 2 collaborations

Gift Nuka 2 collaborations

Arun P Pandurangan 2 collaborations

Typhaine Paysan-Lafosse 2 collaborations

Catherine Rivoire 2 collaborations

Gustavo A Salazar 2 collaborations

Christian J A Sigrist 2 collaborations

Ian Sillitoe 2 collaborations

Narmada Thanki 2 collaborations

Paul D Thomas 2 collaborations

Silvio C E Tosatto 2 collaborations

Alessio Milanese 2 collaborations

Georg Zeller 2 collaborations

Renato Alves 2 collaborations

Falk Hildebrand 2 collaborations

Sébastien André 2 collaborations

Soraya Fellahi 2 collaborations

Sofia Forslund 2 collaborations

Florian Marquet 2 collaborations

Thi Thuy Duyen Nguyen 1 collaboration

Sebastian Proost 1 collaboration

Jean-Phillippe Bastard 1 collaboration

Jean-Sébastien Hulot 1 collaboration

Helle K Pedersen 1 collaboration

Jens P Gøtze 1 collaboration

Jens J Holst 1 collaboration

Hans-Joachim Ruscheweyh 1 collaboration

Yiqian Duan 1 collaboration

Davide Heller 1 collaboration

Helen Cook 1 collaboration

Lajos Markó 1 collaboration

Lucas Moitinho-Silva 1 collaboration

Renato J Alves 1 collaboration

Till Birkner 1 collaboration

Leopold Fezeu 1 collaboration

Jorge Botas 1 collaboration

Rebecca Kirsch 1 collaboration

Angela Serra 1 collaboration

Vittorio Fortino 1 collaboration

Richard D Handy 1 collaboration

Bengt Fadeel 1 collaboration

Roberto Tagliaferri 1 collaboration

Dario Greco 1 collaboration

Alex L Mitchell 1 collaboration

Teresa K Attwood 1 collaboration

Patricia C Babbitt 1 collaboration

Shoshana D Brown 1 collaboration

Sara El-Gebali 1 collaboration

Matthew I Fraser 1 collaboration

David R Haft 1 collaboration

Hongzhan Huang 1 collaboration

Rodrigo Lopez 1 collaboration

Aurélien Luciani 1 collaboration

Fabio Madeira 1 collaboration

Christine Orengo 1 collaboration

Sebastien Pesseat 1 collaboration

Simon C Potter 1 collaboration

Matloob A Qureshi 1 collaboration

Neil D Rawlings 1 collaboration

Nicole Redaschi 1 collaboration

Lorna J Richardson 1 collaboration

Amaia Sangrador-Vegas 1 collaboration

Granger G Sutton 1 collaboration

Siew-Yit Yong 1 collaboration

Sara Chuguransky 1 collaboration

Tiago Grego 1 collaboration

Swaathi Kandasaamy 1 collaboration

Alex Mitchell 1 collaboration

Matloob Qureshi 1 collaboration

Shriya Raj 1 collaboration

Lorna Richardson 1 collaboration

Lowri Williams 1 collaboration

Daniel H Haft 1 collaboration

Christine A Orengo 1 collaboration

Cathy H Wu 1 collaboration

Alex Bateman 1 collaboration

Quinten R Ducarmon 1 collaboration

Nicolai Karcher 1 collaboration

Martin Larralde 1 collaboration

Lukas Malfertheiner 1 collaboration

Joao Frederico Matias Rodrigues 1 collaboration

Claudia Sanchis-López 1 collaboration

Christian Schudoma 1 collaboration

Lucas Paoli 1 collaboration

Askarbek N Orakov 1 collaboration

Álvaro Rodríguez Del Río 1 collaboration

Pernille Neve Myers 1 collaboration

Thomas Sebastian Schmidt 1 collaboration

Shaojun Pan 1 collaboration

Longhao Jia 1 collaboration

Xing-Ming Zhao 1 collaboration

Henrik Bjørn Nielsen 1 collaboration

Lise Voland 1 collaboration

Karen E Assmann 1 collaboration

Jean Debédat 1 collaboration

Tiphaine Le Roy 1 collaboration

Chloé Amouyal 1 collaboration

Matthias Blüher 1 collaboration

Maria Carlota Dao 1 collaboration

Promi Das 1 collaboration

Bridget Holmes 1 collaboration

Phuong Le 1 collaboration

Louise Mannerås-Holm 1 collaboration

Veronique Pelloux 1 collaboration

Jens Holst 1 collaboration

Oluf Borbye Pedersen 1 collaboration

Antonio Molinaro 1 collaboration

Pierre Bel Lassen 1 collaboration

Marcus Henricsson 1 collaboration

Hao Wu 1 collaboration

Per-Olof Bergh 1 collaboration

Nadja B Sønderskov 1 collaboration

Sebastien Fromentin 1 collaboration

Kanta Chechi 1 collaboration

Petros Andrikopoulos 1 collaboration

Yong Fan 1 collaboration

Michael T Olanipekun 1 collaboration

Solia Adiouch 1 collaboration

Noam Bar 1 collaboration

Yeela Talmor-Barkan 1 collaboration

Lesley Hoyles 1 collaboration

Hanna Julienne 1 collaboration

Peishun Li 1 collaboration

Dominique Gauguier 1 collaboration

Ran Kornowski 1 collaboration

Eran Segal 1 collaboration

Georgy Smyshlyaev 1 collaboration

Mechthild Luetge 1 collaboration

Orsolya Barabas 1 collaboration