Arun P Pandurangan

Affiliations

Department of Biochemistry, Sanger Building, University of Cambridge, Cambridge, United Kingdom.

Publications (15)

The Genome3D Consortium for Structural Annotations of Selected Model Organisms.

Methods in molecular biology (Clifton, N.J.)

Avec: Vaishali P Waman , Tom L Blundell , Daniel W A Buchan , Julian Gough , David Jones , Lawrence Kelley , Alexey Murzin , Arun Prasad Pandurangan , Ian Sillitoe , Michael Sternberg , Pedro Torres , Christine Orengo

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.

Nucleic acids research

Avec: Arun Prasad Pandurangan , Jonathan Stahlhacke , Matt E Oates , Ben Smithers , Julian Gough

In silico analysis of mutations near S1/S2 cleavage site in SARS-CoV-2 spike protein reveals increased propensity of glycosylation in Omicron strain.

Journal of medical virology

Avec: Christopher A Beaudoin , Arun P Pandurangan , So Yeon Kim , Samir W Hamaia , Christopher L-H Huang , Tom L Blundell , Sundeep Chaitanya Vedithi , Antony P Jackson

Hypothesis-free phenotype prediction within a genetics-first framework.

Nature communications

Avec: Chang Lu , Jan Zaucha , Rihab Gam , Hai Fang , Ben Smithers , Matt E Oates , Miguel Bernabe-Rubio , James Williams , Natalie Zelenka , Arun Prasad Pandurangan , Himani Tandon , Hashem Shihab , Raju Kalaivani , Minkyung Sung , Adam J Sardar , Bastian Greshake Tzovoras , Davide Danovi , Julian Gough

Evolution and host-specific adaptation of

Science (New York, N.Y.)

Avec: Aaron Weimann , Adam M Dinan , Christopher Ruis , Audrey Bernut , Stéphane Pont , Karen Brown , Judy Ryan , Lúcia Santos , Louise Ellison , Emem Ukor , Arun P Pandurangan , Sina Krokowski , Tom L Blundell , Martin Welch , Beth Blane , Kim Judge , Rachel Bousfield , Nicholas Brown , Josephine M Bryant , Irena Kukavica-Ibrulj , Giordano Rampioni , Livia Leoni , Patrick T Harrison , Sharon J Peacock , Nicholas R Thomson , Jeff Gauthier , Jo L Fothergill , Roger C Levesque , Julian Parkhill , R Andres Floto

SARS-CoV-2 Omicron subvariant spike N405 unlikely to rapidly deamidate.

Biochemical and biophysical research communications

Avec: Christopher A Beaudoin , Emmanouela Petsolari , Samir W Hamaia , Sharif Hala , Fadwa S Alofi , Arun P Pandurangan , Tom L Blundell , Sundeep Chaitanya Vedithi , Christopher L-H Huang , Antony P Jackson

Prediction of impacts of mutations on protein structure and interactions: SDM, a statistical approach, and mCSM, using machine learning.

Protein science : a publication of the Protein Society

Avec: Arun Prasad Pandurangan , Tom L Blundell

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.

Nucleic acids research

Avec: Ian Sillitoe , Antonina Andreeva , Tom L Blundell , Daniel W A Buchan , Robert D Finn , Julian Gough , David Jones , Lawrence A Kelley , Typhaine Paysan-Lafosse , Su Datt Lam , Alexey G Murzin , Arun Prasad Pandurangan , Gustavo A Salazar , Marcin J Skwark , Michael J E Sternberg , Sameer Velankar , Christine Orengo

Computational and structural biotechnology journal

Avec: Rushikesh Singh Dasoondi , Tom L Blundell , Arun Prasad Pandurangan

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Nucleic acids research

Avec: Alex L Mitchell , Teresa K Attwood , Patricia C Babbitt , Matthias Blum , Peer Bork , Alan Bridge , Shoshana D Brown , Hsin-Yu Chang , Sara El-Gebali , Matthew I Fraser , Julian Gough , David R Haft , Hongzhan Huang , Ivica Letunic , Rodrigo Lopez , Aurélien Luciani , Fabio Madeira , Aron Marchler-Bauer , Huaiyu Mi , Darren A Natale , Marco Necci , Gift Nuka , Christine Orengo , Arun P Pandurangan , Typhaine Paysan-Lafosse , Sebastien Pesseat , Simon C Potter , Matloob A Qureshi , Neil D Rawlings , Nicole Redaschi , Lorna J Richardson , Catherine Rivoire , Gustavo A Salazar , Amaia Sangrador-Vegas , Christian J A Sigrist , Ian Sillitoe , Granger G Sutton , Narmada Thanki , Paul D Thomas , Silvio C E Tosatto , Siew-Yit Yong , Robert D Finn

The InterPro protein families and domains database: 20 years on.

Nucleic acids research

Avec: Matthias Blum , Hsin-Yu Chang , Sara Chuguransky , Tiago Grego , Swaathi Kandasaamy , Alex Mitchell , Gift Nuka , Typhaine Paysan-Lafosse , Matloob Qureshi , Shriya Raj , Lorna Richardson , Gustavo A Salazar , Lowri Williams , Peer Bork , Alan Bridge , Julian Gough , Daniel H Haft , Ivica Letunic , Aron Marchler-Bauer , Huaiyu Mi , Darren A Natale , Marco Necci , Christine A Orengo , Arun P Pandurangan , Catherine Rivoire , Christian J A Sigrist , Ian Sillitoe , Narmada Thanki , Paul D Thomas , Silvio C E Tosatto , Cathy H Wu , Alex Bateman , Robert D Finn

Mutational spectra are associated with bacterial niche.

Nature communications

Avec: Christopher Ruis , Aaron Weimann , Gerry Tonkin-Hill , Arun Prasad Pandurangan , Marta Matuszewska , Gemma G R Murray , Roger C Lévesque , Tom L Blundell , R Andres Floto , Julian Parkhill

Cell-to-cell interactions revealed by cryo-tomography of a DPANN co-culture system.

Nature communications

Avec: Matthew D Johnson , Doulin C Shepherd , Hiroyuki D Sakai , Manasi Mudaliyar , Arun Prasad Pandurangan , Francesca L Short , Paul D Veith , Nichollas E Scott , Norio Kurosawa , Debnath Ghosal

Optopharmacology reveals a differential contribution of native GABA

Neuropharmacology

Avec: Martin Mortensen , Rosemary Huckvale , Arun P Pandurangan , James R Baker , Trevor G Smart

InterPro in 2022.

Nucleic acids research

Avec: Typhaine Paysan-Lafosse , Matthias Blum , Sara Chuguransky , Tiago Grego , Beatriz Lázaro Pinto , Gustavo A Salazar , Maxwell L Bileschi , Peer Bork , Alan Bridge , Lucy Colwell , Julian Gough , Daniel H Haft , Ivica Letunić , Aron Marchler-Bauer , Huaiyu Mi , Darren A Natale , Christine A Orengo , Arun P Pandurangan , Catherine Rivoire , Christian J A Sigrist , Ian Sillitoe , Narmada Thanki , Paul D Thomas , Silvio C E Tosatto , Cathy H Wu , Alex Bateman

Réseau de co-auteurs

Tom L Blundell 8 collaborations

Arun Prasad Pandurangan 8 collaborations

Julian Gough 7 collaborations

Ian Sillitoe 5 collaborations

Typhaine Paysan-Lafosse 4 collaborations

Gustavo A Salazar 4 collaborations

Christine Orengo 3 collaborations

Robert D Finn 3 collaborations

Matthias Blum 3 collaborations

Peer Bork 3 collaborations

Alan Bridge 3 collaborations

Aron Marchler-Bauer 3 collaborations

Huaiyu Mi 3 collaborations

Darren A Natale 3 collaborations

Catherine Rivoire 3 collaborations

Christian J A Sigrist 3 collaborations

Narmada Thanki 3 collaborations

Paul D Thomas 3 collaborations

Silvio C E Tosatto 3 collaborations

Daniel W A Buchan 2 collaborations

David Jones 2 collaborations

Matt E Oates 2 collaborations

Christopher A Beaudoin 2 collaborations

Samir W Hamaia 2 collaborations

Christopher L-H Huang 2 collaborations

Sundeep Chaitanya Vedithi 2 collaborations

Antony P Jackson 2 collaborations

Aaron Weimann 2 collaborations

Christopher Ruis 2 collaborations

Julian Parkhill 2 collaborations

R Andres Floto 2 collaborations

Hsin-Yu Chang 2 collaborations

Ivica Letunic 2 collaborations

Marco Necci 2 collaborations

Gift Nuka 2 collaborations

Sara Chuguransky 2 collaborations

Tiago Grego 2 collaborations

Daniel H Haft 2 collaborations

Christine A Orengo 2 collaborations

Cathy H Wu 2 collaborations

Alex Bateman 2 collaborations

Vaishali P Waman 1 collaboration

Lawrence Kelley 1 collaboration

Alexey Murzin 1 collaboration

Michael Sternberg 1 collaboration

Pedro Torres 1 collaboration

Jonathan Stahlhacke 1 collaboration

Ben Smithers 1 collaboration

So Yeon Kim 1 collaboration

Chang Lu 1 collaboration

Jan Zaucha 1 collaboration

Rihab Gam 1 collaboration

Hai Fang 1 collaboration

None Ben Smithers 1 collaboration

Miguel Bernabe-Rubio 1 collaboration

James Williams 1 collaboration

Natalie Zelenka 1 collaboration

Himani Tandon 1 collaboration

Hashem Shihab 1 collaboration

Raju Kalaivani 1 collaboration

Minkyung Sung 1 collaboration

Adam J Sardar 1 collaboration

Bastian Greshake Tzovoras 1 collaboration

Davide Danovi 1 collaboration

Adam M Dinan 1 collaboration

Audrey Bernut 1 collaboration

Stéphane Pont 1 collaboration

Karen Brown 1 collaboration

Judy Ryan 1 collaboration

Lúcia Santos 1 collaboration

Louise Ellison 1 collaboration

Emem Ukor 1 collaboration

Sina Krokowski 1 collaboration

Martin Welch 1 collaboration

Beth Blane 1 collaboration

Kim Judge 1 collaboration

Rachel Bousfield 1 collaboration

Nicholas Brown 1 collaboration

Josephine M Bryant 1 collaboration

Irena Kukavica-Ibrulj 1 collaboration

Giordano Rampioni 1 collaboration

Livia Leoni 1 collaboration

Patrick T Harrison 1 collaboration

Sharon J Peacock 1 collaboration

Nicholas R Thomson 1 collaboration

Jeff Gauthier 1 collaboration

Jo L Fothergill 1 collaboration

Roger C Levesque 1 collaboration

Emmanouela Petsolari 1 collaboration

Sharif Hala 1 collaboration

Fadwa S Alofi 1 collaboration

Antonina Andreeva 1 collaboration

Lawrence A Kelley 1 collaboration

Su Datt Lam 1 collaboration

Alexey G Murzin 1 collaboration

Marcin J Skwark 1 collaboration

Michael J E Sternberg 1 collaboration

Sameer Velankar 1 collaboration

Rushikesh Singh Dasoondi 1 collaboration

Alex L Mitchell 1 collaboration

Teresa K Attwood 1 collaboration

Patricia C Babbitt 1 collaboration

Shoshana D Brown 1 collaboration

Sara El-Gebali 1 collaboration

Matthew I Fraser 1 collaboration

David R Haft 1 collaboration

Hongzhan Huang 1 collaboration

Rodrigo Lopez 1 collaboration

Aurélien Luciani 1 collaboration

Fabio Madeira 1 collaboration

Sebastien Pesseat 1 collaboration

Simon C Potter 1 collaboration

Matloob A Qureshi 1 collaboration

Neil D Rawlings 1 collaboration

Nicole Redaschi 1 collaboration

Lorna J Richardson 1 collaboration

Amaia Sangrador-Vegas 1 collaboration

Granger G Sutton 1 collaboration

Siew-Yit Yong 1 collaboration

Swaathi Kandasaamy 1 collaboration

Alex Mitchell 1 collaboration

Matloob Qureshi 1 collaboration

Shriya Raj 1 collaboration

Lorna Richardson 1 collaboration

Lowri Williams 1 collaboration

Gerry Tonkin-Hill 1 collaboration

Marta Matuszewska 1 collaboration

Gemma G R Murray 1 collaboration

Roger C Lévesque 1 collaboration

Matthew D Johnson 1 collaboration

Doulin C Shepherd 1 collaboration

Hiroyuki D Sakai 1 collaboration

Manasi Mudaliyar 1 collaboration

Francesca L Short 1 collaboration

Paul D Veith 1 collaboration

Nichollas E Scott 1 collaboration

Norio Kurosawa 1 collaboration

Debnath Ghosal 1 collaboration

Martin Mortensen 1 collaboration

Rosemary Huckvale 1 collaboration

James R Baker 1 collaboration

Trevor G Smart 1 collaboration

Beatriz Lázaro Pinto 1 collaboration

Maxwell L Bileschi 1 collaboration

Lucy Colwell 1 collaboration

Ivica Letunić 1 collaboration