Quinten R Ducarmon

Affiliations

Center for Microbiome Analyses and Therapeutics, LUCID Research, Leiden University Medical Center, Leiden, Netherlands.

Publications (21)

Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins.

Environmental health : a global access science source

Avec: Robin Mesnage , Ruth C E Bowyer , Souleiman El Balkhi , Franck Saint-Marcoux , Arnaud Gardere , Quinten Raymond Ducarmon , Anoecim Robecca Geelen , Romy Daniëlle Zwittink , Dimitris Tsoukalas , Evangelia Sarandi , Efstathia I Paramera , Timothy Spector , Claire J Steves , Michael N Antoniou

Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection.

Genome medicine

Avec: Sam Nooij , Karuna E W Vendrik , Romy D Zwittink , Quinten R Ducarmon , Josbert J Keller , Ed J Kuijper , Elisabeth M Terveer , Auteur inconnu

Impact of dietary carbohydrate, fat, or protein restriction on the human gut microbiome: a systematic review.

Nutrition research reviews

Avec: Marjolein P Schoonakker , Petra G van Peet , Elske L van den Burg , Mattijs E Numans , Quinten R Ducarmon , Hanno Pijl , Maria Wiese

Profiling the fecal microbiome and its modulators across the lifespan in the Netherlands.

Cell reports

Avec: David Boverhoff , Jolanda Kool , Roan Pijnacker , Quinten R Ducarmon , Georg Zeller , Sudarshan Shetty , Stephan Sie , Annemieke Christine Mulder , Fiona van der Klis , Eelco Franz , Lapo Mughini-Gras , Debbie van Baarle , Susana Fuentes

Toward Standards in Clinical Microbiota Studies: Comparison of Three DNA Extraction Methods and Two Bioinformatic Pipelines.

mSystems

Avec: Q R Ducarmon , B V H Hornung , A R Geelen , E J Kuijper , R D Zwittink

Dynamics of the bacterial gut microbiota during controlled human infection with

Gut microbes

Avec: Q R Ducarmon , M A Hoogerwerf , J J Janse , A R Geelen , J P R Koopman , R D Zwittink , J J Goeman , E J Kuijper , M Roestenberg

Multi-omics phenotyping of the gut-liver axis reveals metabolic perturbations from a low-dose pesticide mixture in rats.

Communications biology

Avec: Robin Mesnage , Maxime Teixeira , Daniele Mandrioli , Laura Falcioni , Mariam Ibragim , Quinten Raymond Ducarmon , Romy Daniëlle Zwittink , Caroline Amiel , Jean-Michel Panoff , Emma Bourne , Emanuel Savage , Charles A Mein , Fiorella Belpoggi , Michael N Antoniou

Use of Shotgun Metagenomics and Metabolomics to Evaluate the Impact of Glyphosate or Roundup MON 52276 on the Gut Microbiota and Serum Metabolome of Sprague-Dawley Rats.

Environmental health perspectives

Avec: Robin Mesnage , Maxime Teixeira , Daniele Mandrioli , Laura Falcioni , Quinten Raymond Ducarmon , Romy Daniëlle Zwittink , Francesca Mazzacuva , Anna Caldwell , John Halket , Caroline Amiel , Jean-Michel Panoff , Fiorella Belpoggi , Michael Nicolas Antoniou

Enrichment of colibactin-associated mutational signatures in unexplained colorectal polyposis patients.

BMC cancer

Avec: Diantha Terlouw , Arnoud Boot , Quinten R Ducarmon , Sam Nooij , Manon Suerink , Monique E van Leerdam , Demi van Egmond , Carli M Tops , Romy D Zwittink , Dina Ruano , Alexandra M J Langers , Maartje Nielsen , Tom van Wezel , Hans Morreau

Opportunities and Challenges in Development of Live Biotherapeutic Products to Fight Infections.

The Journal of infectious diseases

Avec: Quinten R Ducarmon , Ed J Kuijper , Bernat Olle

Gut colonisation by extended-spectrum β-lactamase-producing Escherichia coli and its association with the gut microbiome and metabolome in Dutch adults: a matched case-control study.

The Lancet. Microbe

Avec: Quinten R Ducarmon , Romy D Zwittink , Roel P J Willems , Aswin Verhoeven , Sam Nooij , Fiona R M van der Klis , Eelco Franz , Jolanda Kool , Martin Giera , Christina M J E Vandenbroucke-Grauls , Susana Fuentes , Ed J Kuijper

Clostridioides difficile infection with isolates of cryptic clade C-II: a genomic analysis of polymerase chain reaction ribotype 151.

Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

Avec: Quinten R Ducarmon , Tjomme van der Bruggen , Céline Harmanus , Ingrid M J G Sanders , Laura G M Daenen , Ad C Fluit , Rolf H A M Vossen , Susan L Kloet , Ed J Kuijper , Wiep Klaas Smits

Sequence-Based Identification of Metronidazole-Resistant Clostridioides difficile Isolates.

Emerging infectious diseases

Avec: Wiep Klaas Smits , Céline Harmanus , Ingrid M J G Sanders , Lynn Bry , Grace A Blackwell , Quinten R Ducarmon , Eliane de Oliveira Ferreira , Ed J Kuijper

Remodelling of the intestinal ecosystem during caloric restriction and fasting.

Trends in microbiology

Avec: Quinten R Ducarmon , Franziska Grundler , Yvon Le Maho , Françoise Wilhelmi de Toledo , Georg Zeller , Caroline Habold , Robin Mesnage

Spatially and temporally resolved metabolome of the human oral cavity.

iScience

Avec: Alessio Ciurli , Yassene Mohammed , Christine Ammon , Rico J E Derks , Damien Olivier-Jimenez , Quinten R Ducarmon , Marije Slingerland , Jacques Neefjes , Martin Giera

Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection.

Microbiology and molecular biology reviews : MMBR

Avec: Q R Ducarmon , R D Zwittink , B V H Hornung , W van Schaik , V B Young , E J Kuijper

Gut Microbiota and Dietary Intake of Normal-Weight and Overweight Filipino Children.

Microorganisms

Avec: Maria Julia Golloso-Gubat , Quinten R Ducarmon , Robby Carlo A Tan , Romy D Zwittink , Ed J Kuijper , Jacus S Nacis , Noelle Lyn C Santos

Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home.

Genome medicine

Avec: Quinten R Ducarmon , Elisabeth M Terveer , Sam Nooij , Michelle N Bloem , Karuna E W Vendrik , Monique A A Caljouw , Ingrid M J G Sanders , Sofie M van Dorp , Man C Wong , Romy D Zwittink , Ed J Kuijper

Fecal Microbiota Transplantation Influences Procarcinogenic Escherichia coli in Recipient Recurrent Clostridioides difficile Patients.

Gastroenterology

Avec: Sam Nooij , Quinten R Ducarmon , Jeroen F J Laros , Romy D Zwittink , Jason M Norman , Wiep Klaas Smits , Hein W Verspaget , Josbert J Keller , Elisabeth M Terveer , Ed J Kuijper , Auteur inconnu

proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.

Nucleic acids research

Avec: Anthony Fullam , Ivica Letunic , Thomas S B Schmidt , Quinten R Ducarmon , Nicolai Karcher , Supriya Khedkar , Michael Kuhn , Martin Larralde , Oleksandr M Maistrenko , Lukas Malfertheiner , Alessio Milanese , Joao Frederico Matias Rodrigues , Claudia Sanchis-López , Christian Schudoma , Damian Szklarczyk , Shinichi Sunagawa , Georg Zeller , Jaime Huerta-Cepas , Christian von Mering , Peer Bork , Daniel R Mende

Colibactin mutational signatures in NTHL1 tumor syndrome and MUTYH associated polyposis patients.

Genes, chromosomes & cancer

Avec: D Terlouw , A Boot , Q R Ducarmon , S Nooij , M A Jessurun , M E van Leerdam , C M Tops , A M J Langers , H Morreau , T van Wezel , M Nielsen

Réseau de co-auteurs

Ed J Kuijper 8 collaborations

Romy D Zwittink 6 collaborations

Sam Nooij 5 collaborations

Robin Mesnage 4 collaborations

Q R Ducarmon 4 collaborations

Quinten Raymond Ducarmon 3 collaborations

Romy Daniëlle Zwittink 3 collaborations

Elisabeth M Terveer 3 collaborations

Georg Zeller 3 collaborations

E J Kuijper 3 collaborations

R D Zwittink 3 collaborations

Ingrid M J G Sanders 3 collaborations

Wiep Klaas Smits 3 collaborations

Michael N Antoniou 2 collaborations

Karuna E W Vendrik 2 collaborations

Josbert J Keller 2 collaborations

None None 2 collaborations

Jolanda Kool 2 collaborations

Eelco Franz 2 collaborations

Susana Fuentes 2 collaborations

B V H Hornung 2 collaborations

A R Geelen 2 collaborations

Maxime Teixeira 2 collaborations

Daniele Mandrioli 2 collaborations

Laura Falcioni 2 collaborations

Caroline Amiel 2 collaborations

Jean-Michel Panoff 2 collaborations

Fiorella Belpoggi 2 collaborations

Martin Giera 2 collaborations

Céline Harmanus 2 collaborations

Ruth C E Bowyer 1 collaboration

Souleiman El Balkhi 1 collaboration

Franck Saint-Marcoux 1 collaboration

Arnaud Gardere 1 collaboration

Anoecim Robecca Geelen 1 collaboration

Dimitris Tsoukalas 1 collaboration

Evangelia Sarandi 1 collaboration

Efstathia I Paramera 1 collaboration

Timothy Spector 1 collaboration

Claire J Steves 1 collaboration

Marjolein P Schoonakker 1 collaboration

Petra G van Peet 1 collaboration

Elske L van den Burg 1 collaboration

Mattijs E Numans 1 collaboration

Hanno Pijl 1 collaboration

Maria Wiese 1 collaboration

David Boverhoff 1 collaboration

Roan Pijnacker 1 collaboration

Sudarshan Shetty 1 collaboration

Stephan Sie 1 collaboration

Annemieke Christine Mulder 1 collaboration

Fiona van der Klis 1 collaboration

Lapo Mughini-Gras 1 collaboration

Debbie van Baarle 1 collaboration

M A Hoogerwerf 1 collaboration

J J Janse 1 collaboration

J P R Koopman 1 collaboration

J J Goeman 1 collaboration

M Roestenberg 1 collaboration

Mariam Ibragim 1 collaboration

Emma Bourne 1 collaboration

Emanuel Savage 1 collaboration

Charles A Mein 1 collaboration

Francesca Mazzacuva 1 collaboration

Anna Caldwell 1 collaboration

John Halket 1 collaboration

Michael Nicolas Antoniou 1 collaboration

Diantha Terlouw 1 collaboration

Arnoud Boot 1 collaboration

Manon Suerink 1 collaboration

Monique E van Leerdam 1 collaboration

Demi van Egmond 1 collaboration

Carli M Tops 1 collaboration

Dina Ruano 1 collaboration

Alexandra M J Langers 1 collaboration

Maartje Nielsen 1 collaboration

Tom van Wezel 1 collaboration

Hans Morreau 1 collaboration

Bernat Olle 1 collaboration

Roel P J Willems 1 collaboration

Aswin Verhoeven 1 collaboration

Fiona R M van der Klis 1 collaboration

Christina M J E Vandenbroucke-Grauls 1 collaboration

Tjomme van der Bruggen 1 collaboration

Laura G M Daenen 1 collaboration

Ad C Fluit 1 collaboration

Rolf H A M Vossen 1 collaboration

Susan L Kloet 1 collaboration

Lynn Bry 1 collaboration

Grace A Blackwell 1 collaboration

Eliane de Oliveira Ferreira 1 collaboration

Franziska Grundler 1 collaboration

Yvon Le Maho 1 collaboration

Françoise Wilhelmi de Toledo 1 collaboration

Caroline Habold 1 collaboration

Alessio Ciurli 1 collaboration

Yassene Mohammed 1 collaboration

Christine Ammon 1 collaboration

Rico J E Derks 1 collaboration

Damien Olivier-Jimenez 1 collaboration

Marije Slingerland 1 collaboration

Jacques Neefjes 1 collaboration

W van Schaik 1 collaboration

V B Young 1 collaboration

Maria Julia Golloso-Gubat 1 collaboration

Robby Carlo A Tan 1 collaboration

Jacus S Nacis 1 collaboration

Noelle Lyn C Santos 1 collaboration

Michelle N Bloem 1 collaboration

Monique A A Caljouw 1 collaboration

Sofie M van Dorp 1 collaboration

Man C Wong 1 collaboration

Jeroen F J Laros 1 collaboration

Jason M Norman 1 collaboration

Hein W Verspaget 1 collaboration

Anthony Fullam 1 collaboration

Ivica Letunic 1 collaboration

Thomas S B Schmidt 1 collaboration

Nicolai Karcher 1 collaboration

Supriya Khedkar 1 collaboration

Michael Kuhn 1 collaboration

Martin Larralde 1 collaboration

Oleksandr M Maistrenko 1 collaboration

Lukas Malfertheiner 1 collaboration

Alessio Milanese 1 collaboration

Joao Frederico Matias Rodrigues 1 collaboration

Claudia Sanchis-López 1 collaboration

Christian Schudoma 1 collaboration

Damian Szklarczyk 1 collaboration

Shinichi Sunagawa 1 collaboration

Jaime Huerta-Cepas 1 collaboration

Christian von Mering 1 collaboration

Peer Bork 1 collaboration

Daniel R Mende 1 collaboration

D Terlouw 1 collaboration

A Boot 1 collaboration

S Nooij 1 collaboration

M A Jessurun 1 collaboration

M E van Leerdam 1 collaboration

C M Tops 1 collaboration

A M J Langers 1 collaboration

H Morreau 1 collaboration

T van Wezel 1 collaboration

M Nielsen 1 collaboration