Agnieszka A Golicz

Affiliations

Plant Molecular Biology and Biotechnology Laboratory, Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, Melbourne, VIC, Australia. agnieszka.golicz@unimelb.edu.au.

ORCID: http://orcid.org/0000-0002-9711-4826

Publications (28)

Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways.

Functional & integrative genomics

Avec: Agnieszka A Golicz , Ursula Steinfort , Hina Arya , Mohan B Singh , Prem L Bhalla

A dynamic intron retention program regulates the expression of several hundred genes during pollen meiosis.

Plant reproduction

Avec: Agnieszka A Golicz , Annapurna D Allu , Wei Li , Neeta Lohani , Mohan B Singh , Prem L Bhalla

Analysis of the winter oilseed rape recombination landscape suggests maternal-paternal bias.

Genome

Avec: Nayyer Abdollahi Sisi , Eva Herzog , Amine Abbadi , Rod J Snowdon , Agnieszka A Golicz

Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach.

Methods in molecular biology (Clifton, N.J.)

Avec: Haifei Hu , Yuxuan Yuan , Philipp E Bayer , Cassandria T Fernandez , Armin Scheben , Agnieszka A Golicz , David Edwards

Long Intergenic Noncoding RNA (lincRNA) Discovery from Non-Strand-Specific RNA-Seq Data.

Methods in molecular biology (Clifton, N.J.)

Avec: A A Golicz

Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids.

Plant biotechnology journal

Avec: Philipp E Bayer , Armin Scheben , Agnieszka A Golicz , Yuxuan Yuan , Sebastien Faure , HueyTyng Lee , Harmeet Singh Chawla , Robyn Anderson , Ian Bancroft , Harsh Raman , Yong Pyo Lim , Steven Robbens , Lixi Jiang , Shengyi Liu , Michael S Barker , M Eric Schranz , Xiaowu Wang , Graham J King , J Chris Pires , Boulos Chalhoub , Rod J Snowdon , Jacqueline Batley , David Edwards

haploMAGIC: Accurate phasing and detection of recombination in multiparental populations despite genotyping errors.

G3 (Bethesda, Md.)

Avec: Jose A Montero-Tena , Nayyer Abdollahi Sisi , Tobias Kox , Amine Abbadi , Rod J Snowdon , Agnieszka A Golicz

Plant pan-genomes are the new reference.

Nature plants

Avec: Philipp E Bayer , Agnieszka A Golicz , Armin Scheben , Jacqueline Batley , David Edwards

Correction to: Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways.

Functional & integrative genomics

Avec: Agnieszka A Golicz , Ursula Steinfort , Hina Arya , Mohan B Singh , Prem L Bhalla

Author Correction: Plant pan-genomes are the new reference.

Nature plants

Avec: Philipp E Bayer , Agnieszka A Golicz , Armin Scheben , Jacqueline Batley , David Edwards

The giant diploid faba genome unlocks variation in a global protein crop.

Nature

Avec: Murukarthick Jayakodi , Agnieszka A Golicz , Jonathan Kreplak , Lavinia I Fechete , Deepti Angra , Petr Bednář , Elesandro Bornhofen , Hailin Zhang , Raphaël Boussageon , Sukhjiwan Kaur , Kwok Cheung , Jana Čížková , Heidrun Gundlach , Asis Hallab , Baptiste Imbert , Gabriel Keeble-Gagnère , Andrea Koblížková , Lucie Kobrlová , Petra Krejčí , Troels W Mouritzen , Pavel Neumann , Marcin Nadzieja , Linda Kærgaard Nielsen , Petr Novák , Jihad Orabi , Sudharsan Padmarasu , Tom Robertson-Shersby-Harvie , Laura Ávila Robledillo , Andrea Schiemann , Jaakko Tanskanen , Petri Törönen , Ahmed O Warsame , Alexander H J Wittenberg , Axel Himmelbach , Grégoire Aubert , Pierre-Emmanuel Courty , Jaroslav Doležel , Liisa U Holm , Luc L Janss , Hamid Khazaei , Jiří Macas , Martin Mascher , Petr Smýkal , Rod J Snowdon , Nils Stein , Frederick L Stoddard , Jens Stougaard , Nadim Tayeh , Ana M Torres , Björn Usadel , Ingo Schubert , Donal Martin O'Sullivan , Alan H Schulman , Stig Uggerhøj Andersen

Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.

Trends in plant science

Avec: Aamir W Khan , Vanika Garg , Manish Roorkiwal , Agnieszka A Golicz , David Edwards , Rajeev K Varshney

Insight into the evolution and functional characteristics of the pan-genome assembly from sesame landraces and modern cultivars.

Plant biotechnology journal

Avec: Jingyin Yu , Agnieszka A Golicz , Kun Lu , Komivi Dossa , Yanxin Zhang , Jinfeng Chen , Linhai Wang , Jun You , Dingding Fan , David Edwards , Xiurong Zhang

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome.

Plant biotechnology journal

Avec: Philipp E Bayer , Agnieszka A Golicz , Soodeh Tirnaz , Chon-Kit Kenneth Chan , David Edwards , Jacqueline Batley

Rice 3D chromatin structure correlates with sequence variation and meiotic recombination rate.

Communications biology

Avec: Agnieszka A Golicz , Prem L Bhalla , David Edwards , Mohan B Singh

Pangenomics in crop improvement-from coding structural variations to finding regulatory variants with pangenome graphs.

The plant genome

Avec: Silvia F Zanini , Philipp E Bayer , Rachel Wells , Rod J Snowdon , Jacqueline Batley , Rajeev K Varshney , Henry T Nguyen , David Edwards , Agnieszka A Golicz

Grain dispersal mechanism in cereals arose from a genome duplication followed by changes in spatial expression of genes involved in pollen development.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Avec: Arthur Cross , John B Li , Robbie Waugh , Agnieszka A Golicz , Mohammad Pourkheirandish

Transgressive and parental dominant gene expression and cytosine methylation during seed development in Brassica napus hybrids.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik

Avec: Mauricio Orantes-Bonilla , Hao Wang , Huey Tyng Lee , Agnieszka A Golicz , Dandan Hu , Wenwen Li , Jun Zou , Rod J Snowdon

Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus.

Genome biology

Avec: Zengdong Tan , Yan Peng , Yao Xiong , Feng Xiong , Yuting Zhang , Ning Guo , Zhuo Tu , Zhanxiang Zong , Xiaokun Wu , Jiang Ye , Chunjiao Xia , Tao Zhu , Yinmeng Liu , Hongxiang Lou , Dongxu Liu , Shaoping Lu , Xuan Yao , Kede Liu , Rod J Snowdon , Agnieszka A Golicz , Weibo Xie , Liang Guo , Hu Zhao

Genome-wide analysis of the Hsf gene family in Brassica oleracea and a comparative analysis of the Hsf gene family in B. oleracea, B. rapa and B. napus.

Functional & integrative genomics

Avec: Neeta Lohani , Agnieszka A Golicz , Mohan B Singh , Prem L Bhalla

Method for Genome-Wide Association Study: A Soybean Example.

Methods in molecular biology (Clifton, N.J.)

Avec: Robyn Anderson , Cassandria Tay Fernandez , Yuxuan Yuan , Agnieszka A Golicz , David Edwards , Philipp E Bayer

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications.

Trends in genetics : TIG

Avec: Agnieszka A Golicz , Philipp E Bayer , Prem L Bhalla , Jacqueline Batley , David Edwards

Global Role of Crop Genomics in the Face of Climate Change.

Frontiers in plant science

Avec: Mohammad Pourkheirandish , Agnieszka A Golicz , Prem L Bhalla , Mohan B Singh

Trait associations in the pangenome of pigeon pea (Cajanus cajan).

Plant biotechnology journal

Avec: Junliang Zhao , Philipp E Bayer , Pradeep Ruperao , Rachit K Saxena , Aamir W Khan , Agnieszka A Golicz , Henry T Nguyen , Jacqueline Batley , David Edwards , Rajeev K Varshney

An SGSGeneloss-Based Method for Constructing a Gene Presence-Absence Table Using Mosdepth.

Methods in molecular biology (Clifton, N.J.)

Avec: Cassandria G Tay Fernandez , Jacob I Marsh , Benjamin J Nestor , Mitchell Gill , Agnieszka A Golicz , Philipp E Bayer , David Edwards

Genome-wide analysis reveals the crucial role of lncRNAs in regulating the expression of genes controlling pollen development.

Plant cell reports

Avec: Neeta Lohani , Agnieszka A Golicz , Annapurna D Allu , Prem L Bhalla , Mohan B Singh

Benchmarking Oxford Nanopore read alignment-based insertion and deletion detection in crop plant genomes.

The plant genome

Avec: Gözde Yildiz , Silvia F Zanini , Nazanin P Afsharyan , Christian Obermeier , Rod J Snowdon , Agnieszka A Golicz

Building pangenome graphs.

Nature methods

Avec: Erik Garrison , Andrea Guarracino , Simon Heumos , Flavia Villani , Zhigui Bao , Lorenzo Tattini , Jörg Hagmann , Sebastian Vorbrugg , Santiago Marco-Sola , Christian Kubica , David G Ashbrook , Kaisa Thorell , Rachel L Rusholme-Pilcher , Gianni Liti , Emilio Rudbeck , Agnieszka A Golicz , Sven Nahnsen , Zuyu Yang , Moses Njagi Mwaniki , Franklin L Nobrega , Yi Wu , Hao Chen , Joep de Ligt , Peter H Sudmant , Sanwen Huang , Detlef Weigel , Nicole Soranzo , Vincenza Colonna , Robert W Williams , Pjotr Prins

Réseau de co-auteurs

David Edwards 13 collaborations

Philipp E Bayer 10 collaborations

Prem L Bhalla 8 collaborations

Rod J Snowdon 8 collaborations

Mohan B Singh 7 collaborations

Jacqueline Batley 7 collaborations

Armin Scheben 4 collaborations

Neeta Lohani 3 collaborations

Yuxuan Yuan 3 collaborations

Rajeev K Varshney 3 collaborations

Ursula Steinfort 2 collaborations

Hina Arya 2 collaborations

Annapurna D Allu 2 collaborations

Nayyer Abdollahi Sisi 2 collaborations

Amine Abbadi 2 collaborations

Robyn Anderson 2 collaborations

Aamir W Khan 2 collaborations

Silvia F Zanini 2 collaborations

Henry T Nguyen 2 collaborations

Mohammad Pourkheirandish 2 collaborations

Wei Li 1 collaboration

Eva Herzog 1 collaboration

Haifei Hu 1 collaboration

Cassandria T Fernandez 1 collaboration

A A Golicz 1 collaboration

Sebastien Faure 1 collaboration

HueyTyng Lee 1 collaboration

Harmeet Singh Chawla 1 collaboration

Ian Bancroft 1 collaboration

Harsh Raman 1 collaboration

Yong Pyo Lim 1 collaboration

Steven Robbens 1 collaboration

Lixi Jiang 1 collaboration

Shengyi Liu 1 collaboration

Michael S Barker 1 collaboration

M Eric Schranz 1 collaboration

Xiaowu Wang 1 collaboration

Graham J King 1 collaboration

J Chris Pires 1 collaboration

Boulos Chalhoub 1 collaboration

Jose A Montero-Tena 1 collaboration

Tobias Kox 1 collaboration

Murukarthick Jayakodi 1 collaboration

Jonathan Kreplak 1 collaboration

Lavinia I Fechete 1 collaboration

Deepti Angra 1 collaboration

Petr Bednář 1 collaboration

Elesandro Bornhofen 1 collaboration

Hailin Zhang 1 collaboration

Raphaël Boussageon 1 collaboration

Sukhjiwan Kaur 1 collaboration

Kwok Cheung 1 collaboration

Jana Čížková 1 collaboration

Heidrun Gundlach 1 collaboration

Asis Hallab 1 collaboration

Baptiste Imbert 1 collaboration

Gabriel Keeble-Gagnère 1 collaboration

Andrea Koblížková 1 collaboration

Lucie Kobrlová 1 collaboration

Petra Krejčí 1 collaboration

Troels W Mouritzen 1 collaboration

Pavel Neumann 1 collaboration

Marcin Nadzieja 1 collaboration

Linda Kærgaard Nielsen 1 collaboration

Petr Novák 1 collaboration

Jihad Orabi 1 collaboration

Sudharsan Padmarasu 1 collaboration

Tom Robertson-Shersby-Harvie 1 collaboration

Laura Ávila Robledillo 1 collaboration

Andrea Schiemann 1 collaboration

Jaakko Tanskanen 1 collaboration

Petri Törönen 1 collaboration

Ahmed O Warsame 1 collaboration

Alexander H J Wittenberg 1 collaboration

Axel Himmelbach 1 collaboration

Grégoire Aubert 1 collaboration

Pierre-Emmanuel Courty 1 collaboration

Jaroslav Doležel 1 collaboration

Liisa U Holm 1 collaboration

Luc L Janss 1 collaboration

Hamid Khazaei 1 collaboration

Jiří Macas 1 collaboration

Martin Mascher 1 collaboration

Petr Smýkal 1 collaboration

Nils Stein 1 collaboration

Frederick L Stoddard 1 collaboration

Jens Stougaard 1 collaboration

Nadim Tayeh 1 collaboration

Ana M Torres 1 collaboration

Björn Usadel 1 collaboration

Ingo Schubert 1 collaboration

Donal Martin O'Sullivan 1 collaboration

Alan H Schulman 1 collaboration

Stig Uggerhøj Andersen 1 collaboration

Vanika Garg 1 collaboration

Manish Roorkiwal 1 collaboration

Jingyin Yu 1 collaboration

Kun Lu 1 collaboration

Komivi Dossa 1 collaboration

Yanxin Zhang 1 collaboration

Jinfeng Chen 1 collaboration

Linhai Wang 1 collaboration

Jun You 1 collaboration

Dingding Fan 1 collaboration

Xiurong Zhang 1 collaboration

Soodeh Tirnaz 1 collaboration

Chon-Kit Kenneth Chan 1 collaboration

Rachel Wells 1 collaboration

Arthur Cross 1 collaboration

John B Li 1 collaboration

Robbie Waugh 1 collaboration

Mauricio Orantes-Bonilla 1 collaboration

Hao Wang 1 collaboration

Huey Tyng Lee 1 collaboration

Dandan Hu 1 collaboration

Wenwen Li 1 collaboration

Jun Zou 1 collaboration

Zengdong Tan 1 collaboration

Yan Peng 1 collaboration

Yao Xiong 1 collaboration

Feng Xiong 1 collaboration

Yuting Zhang 1 collaboration

Ning Guo 1 collaboration

Zhuo Tu 1 collaboration

Zhanxiang Zong 1 collaboration

Xiaokun Wu 1 collaboration

Jiang Ye 1 collaboration

Chunjiao Xia 1 collaboration

Tao Zhu 1 collaboration

Yinmeng Liu 1 collaboration

Hongxiang Lou 1 collaboration

Dongxu Liu 1 collaboration

Shaoping Lu 1 collaboration

Xuan Yao 1 collaboration

Kede Liu 1 collaboration

Weibo Xie 1 collaboration

Liang Guo 1 collaboration

Hu Zhao 1 collaboration

Cassandria Tay Fernandez 1 collaboration

Junliang Zhao 1 collaboration

Pradeep Ruperao 1 collaboration

Rachit K Saxena 1 collaboration

Cassandria G Tay Fernandez 1 collaboration

Jacob I Marsh 1 collaboration

Benjamin J Nestor 1 collaboration

Mitchell Gill 1 collaboration

Gözde Yildiz 1 collaboration

Nazanin P Afsharyan 1 collaboration

Christian Obermeier 1 collaboration

Erik Garrison 1 collaboration

Andrea Guarracino 1 collaboration

Simon Heumos 1 collaboration

Flavia Villani 1 collaboration

Zhigui Bao 1 collaboration

Lorenzo Tattini 1 collaboration

Jörg Hagmann 1 collaboration

Sebastian Vorbrugg 1 collaboration

Santiago Marco-Sola 1 collaboration

Christian Kubica 1 collaboration

David G Ashbrook 1 collaboration

Kaisa Thorell 1 collaboration

Rachel L Rusholme-Pilcher 1 collaboration

Gianni Liti 1 collaboration

Emilio Rudbeck 1 collaboration

Sven Nahnsen 1 collaboration

Zuyu Yang 1 collaboration

Moses Njagi Mwaniki 1 collaboration

Franklin L Nobrega 1 collaboration

Yi Wu 1 collaboration

Hao Chen 1 collaboration

Joep de Ligt 1 collaboration

Peter H Sudmant 1 collaboration

Sanwen Huang 1 collaboration

Detlef Weigel 1 collaboration

Nicole Soranzo 1 collaboration

Vincenza Colonna 1 collaboration

Robert W Williams 1 collaboration

Pjotr Prins 1 collaboration