G Tiana

Affiliations

Department of Physics and Center for Complexity and Biosystems, Università degli Studi di Milano and INFN, via Celoria 16, 20133 Milan, Italy.

Publications (22)

Locality of contacts determines the subdiffusion exponents in polymeric models of chromatin.

Physical review. E

Avec: Edoardo Marchi , Yinxiu Zhan , Guido Tiana

Inheritance of H3K9 methylation regulates genome architecture in Drosophila early embryos.

The EMBO journal

Avec: Nazerke Atinbayeva , Iris Valent , Fides Zenk , Eva Loeser , Michael Rauer , Shwetha Herur , Piergiuseppe Quarato , Giorgos Pyrowolakis , Alejandro Gomez-Auli , Gerhard Mittler , Germano Cecere , Sylvia Erhardt , Guido Tiana , Yinxiu Zhan , Nicola Iovino

Polymer Folding Simulations from Hi-C Data.

Methods in molecular biology (Clifton, N.J.)

Avec: Yinxiu Zhan , Luca Giorgetti , Guido Tiana

The denatured state of HIV-1 protease under native conditions.

Proteins

Avec: Heike I Rösner , Martina Caldarini , Gregory Potel , Daniel Malmodin , Maria A Vanoni , Alessandro Aliverti , Ricardo A Broglia , Birthe B Kragelund , Guido Tiana

Native state of natural proteins optimizes local entropy.

Physical review. E

Avec: M Negri , R Zecchina

Determination of Structural Ensembles of Flexible Molecules in Solution from NMR Data Undergoing Spin Diffusion.

Journal of chemical information and modeling

Avec: Francesca Vasile , Guido Tiana

Cohesin and CTCF control the dynamics of chromosome folding.

Nature genetics

Avec: Pia Mach , Pavel I Kos , Yinxiu Zhan , Julie Cramard , Simon Gaudin , Jana Tünnermann , Edoardo Marchi , Jan Eglinger , Jessica Zuin , Mariya Kryzhanovska , Sebastien Smallwood , Laurent Gelman , Gregory Roth , Elphège P Nora , Guido Tiana , Luca Giorgetti

Predicting the Binding of Small Molecules to Proteins through Invariant Representation of the Molecular Structure.

Journal of chemical information and modeling

Avec: R Beccaria , A Lazzeri ,

MicroRNA-222 Regulates Melanoma Plasticity.

Journal of clinical medicine

Avec: Maria Chiara Lionetti , Filippo Cola , Oleksandr Chepizhko , Maria Rita Fumagalli , Francesc Font-Clos , Roberto Ravasio , Saverio Minucci , Paola Canzano , Marina Camera , Guido Tiana , Stefano Zapperi , Caterina A M La Porta

Coarse Graining of a Giant Molecular System: The Chromatin Fiber.

Methods in molecular biology (Clifton, N.J.)

Avec: Guido Tiana , Luca Giorgetti

Statistical mechanical properties of sequence space determine the efficiency of the various algorithms to predict interaction energies and native contacts from protein coevolution.

Physical biology

Avec: G Franco , M Cagiada , G Bussi ,

HP1 drives de novo 3D genome reorganization in early Drosophila embryos.

Nature

Avec: Fides Zenk , Yinxiu Zhan , Pavel Kos , Eva Löser , Nazerke Atinbayeva , Melanie Schächtle , Guido Tiana , Luca Giorgetti , Nicola Iovino

Evolution of frustrated and stabilising contacts in reconstructed ancient proteins.

European biophysics journal : EBJ

Avec: Martina Crippa , Damiano Andreghetti , Riccardo Capelli , Guido Tiana

Structure of the space of folding protein sequences defined by large language models.

Physical biology

Avec: A Zambon , R Zecchina ,

Molecular Recognition between Cadherins Studied by a Coarse-Grained Model Interacting with a Coevolutionary Potential.

The journal of physical chemistry. B

Avec: Sara Terzoli , Guido Tiana

Assessing the accuracy of direct-coupling analysis for RNA contact prediction.

RNA (New York, N.Y.)

Avec: Francesca Cuturello , Guido Tiana , Giovanni Bussi

DamC reveals principles of chromatin folding in vivo without crosslinking and ligation.

Nature structural & molecular biology

Avec: Josef Redolfi , Yinxiu Zhan , Christian Valdes-Quezada , Mariya Kryzhanovska , Isabel Guerreiro , Vytautas Iesmantavicius , Tim Pollex , Ralph S Grand , Eskeatnaf Mulugeta , Jop Kind , Guido Tiana , Sebastien A Smallwood , Wouter de Laat , Luca Giorgetti

Molecular mechanisms of heterogeneous oligomerization of huntingtin proteins.

Scientific reports

Avec: Silvia Bonfanti , Maria Chiara Lionetti , Maria Rita Fumagalli , Venkat R Chirasani , Guido Tiana , Nikolay V Dokholyan , Stefano Zapperi , Caterina A M La Porta

Effective model of loop extrusion predicts chromosomal domains.

Physical review. E

Avec: Martina Crippa , Yinxiu Zhan , Guido Tiana

Managing Experimental 3D Structures in the Beyond-Rule-of-5 Chemical Space: The Case of Rifampicin.

Chemistry (Weinheim an der Bergstrasse, Germany)

Avec: Giuseppe Ermondi , Francesca Lavore , Maura Vallaro , Guido Tiana , Francesca Vasile , Giulia Caron

Key interaction patterns in proteins revealed by cluster expansion of the partition function.

The European physical journal. E, Soft matter

Avec: Matteo Tajana , Antonio Trovato , Guido Tiana

Effective model of protein-mediated interactions in chromatin.

Physical review. E

Avec: Francesco Borando , Guido Tiana

Réseau de co-auteurs

Guido Tiana 18 collaborations

Yinxiu Zhan 7 collaborations

Luca Giorgetti 5 collaborations

Edoardo Marchi 2 collaborations

Nazerke Atinbayeva 2 collaborations

Fides Zenk 2 collaborations

Nicola Iovino 2 collaborations

R Zecchina 2 collaborations

Francesca Vasile 2 collaborations

Mariya Kryzhanovska 2 collaborations

Maria Chiara Lionetti 2 collaborations

Maria Rita Fumagalli 2 collaborations

Stefano Zapperi 2 collaborations

Caterina A M La Porta 2 collaborations

Martina Crippa 2 collaborations

Iris Valent 1 collaboration

Eva Loeser 1 collaboration

Michael Rauer 1 collaboration

Shwetha Herur 1 collaboration

Piergiuseppe Quarato 1 collaboration

Giorgos Pyrowolakis 1 collaboration

Alejandro Gomez-Auli 1 collaboration

Gerhard Mittler 1 collaboration

Germano Cecere 1 collaboration

Sylvia Erhardt 1 collaboration

Heike I Rösner 1 collaboration

Martina Caldarini 1 collaboration

Gregory Potel 1 collaboration

Daniel Malmodin 1 collaboration

Maria A Vanoni 1 collaboration

Alessandro Aliverti 1 collaboration

Ricardo A Broglia 1 collaboration

Birthe B Kragelund 1 collaboration

M Negri 1 collaboration

Pia Mach 1 collaboration

Pavel I Kos 1 collaboration

Julie Cramard 1 collaboration

Simon Gaudin 1 collaboration

Jana Tünnermann 1 collaboration

Jan Eglinger 1 collaboration

Jessica Zuin 1 collaboration

Sebastien Smallwood 1 collaboration

Laurent Gelman 1 collaboration

Gregory Roth 1 collaboration

Elphège P Nora 1 collaboration

R Beccaria 1 collaboration

A Lazzeri 1 collaboration

Filippo Cola 1 collaboration

Oleksandr Chepizhko 1 collaboration

Francesc Font-Clos 1 collaboration

Roberto Ravasio 1 collaboration

Saverio Minucci 1 collaboration

Paola Canzano 1 collaboration

Marina Camera 1 collaboration

G Franco 1 collaboration

M Cagiada 1 collaboration

G Bussi 1 collaboration

Pavel Kos 1 collaboration

Eva Löser 1 collaboration

Melanie Schächtle 1 collaboration

Damiano Andreghetti 1 collaboration

Riccardo Capelli 1 collaboration

A Zambon 1 collaboration

Sara Terzoli 1 collaboration

Francesca Cuturello 1 collaboration

Giovanni Bussi 1 collaboration

Josef Redolfi 1 collaboration

Christian Valdes-Quezada 1 collaboration

Isabel Guerreiro 1 collaboration

Vytautas Iesmantavicius 1 collaboration

Tim Pollex 1 collaboration

Ralph S Grand 1 collaboration

Eskeatnaf Mulugeta 1 collaboration

Jop Kind 1 collaboration

Sebastien A Smallwood 1 collaboration

Wouter de Laat 1 collaboration

Silvia Bonfanti 1 collaboration

Venkat R Chirasani 1 collaboration

Nikolay V Dokholyan 1 collaboration

Giuseppe Ermondi 1 collaboration

Francesca Lavore 1 collaboration

Maura Vallaro 1 collaboration

Giulia Caron 1 collaboration

Matteo Tajana 1 collaboration

Antonio Trovato 1 collaboration

Francesco Borando 1 collaboration