Timothy J Triche

Affiliations

Children's Hospital Los Angles, Department of Pathology and Laboratory Medicine, Keck School of Medicine of University of Southern California, Los Angeles, CA, USA.

Publications (27)

Emerging variants of concern in SARS-CoV-2 membrane protein: a highly conserved target with potential pathological and therapeutic implications.

Emerging microbes & infections

Avec: Lishuang Shen , Jennifer Dien Bard , Timothy J Triche , Alexander R Judkins , Jaclyn A Biegel , Xiaowu Gai

Persistence of SARS CoV-2 S1 Protein in CD16+ Monocytes in Post-Acute Sequelae of COVID-19 (PASC) up to 15 Months Post-Infection.

Frontiers in immunology

Avec: Bruce K Patterson , Edgar B Francisco , Ram Yogendra , Emily Long , Amruta Pise , Hallison Rodrigues , Eric Hall , Monica Herrera , Purvi Parikh , Jose Guevara-Coto , Timothy J Triche , Paul Scott , Saboor Hekmati , Dennis Maglinte , Xaiolan Chang , Rodrigo A Mora-Rodríguez , Javier Mora

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies.

Nucleic acids research

Avec: Wanding Zhou , Benjamin K Johnson , Jacob Morrison , Ian Beddows , James Eapen , Efrat Katsman , Ayush Semwal , Walid Abi Habib , Lyong Heo , Peter W Laird , Benjamin P Berman , Timothy J Triche , Hui Shen

Prevalence of alternative lengthening of telomeres in pediatric sarcomas determined by the telomeric DNA C-circle assay.

Frontiers in oncology

Avec: Trevor A Burrow , Balakrishna Koneru , Shawn J Macha , Wenyue Sun , Frederic G Barr , Timothy J Triche , C Patrick Reynolds

Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma.

The Journal of pathology

Avec: Gian Luca Negri , Bruno M Grande , Alberto Delaidelli , Amal El-Naggar , Dawn Cochrane , Ching C Lau , Timothy J Triche , Richard A Moore , Steven Jm Jones , Alexandre Montpetit , Marco A Marra , David Malkin , Ryan D Morin , Poul H Sorensen

Rapidly emerging SARS-CoV-2 B.1.1.7 sub-lineage in the United States of America with spike protein D178H and membrane protein V70L mutations.

Emerging microbes & infections

Avec: Lishuang Shen , Jennifer Dien Bard , Timothy J Triche , Alexander R Judkins , Jaclyn A Biegel , Xiaowu Gai

Use of predictive spatial modeling to reveal that primary cancers have distinct central nervous system topography patterns of brain metastasis.

Journal of neurosurgery

Avec: Josh Neman , Meredith Franklin , Zachary Madaj , Krutika Deshpande , Timothy J Triche , Gal Sadlik , John D Carmichael , Eric Chang , Cheng Yu , Ben A Strickland , Gabriel Zada

Potential methylation-regulated genes and pathways in hepatocellular neoplasm, not otherwise specified.

Frontiers in oncology

Avec: Shengmei Zhou , Meng Li , Dejerianne Ostrow , David Ruble , Leo Mascarenhas , Bruce Pawel , Jonathan David Buckley , Timothy J Triche

Evolutionary Landscape of

Genes

Avec: Adam Underwood , Daniel T Rasicci , David Hinds , Jackson T Mitchell , Jacob K Zieba , Joshua Mills , Nicholas E Arnold , Taylor W Cook , Mehdi Moustaqil , Yann Gambin , Emma Sierecki , Frank Fontaine , Sophie Vanderweele , Akansha S Das , William Cvammen , Olivia Sirpilla , Xavier Soehnlen , Kristen Bricker , Maram Alokaili , Morgan Green , Sadie Heeringa , Amy M Wilstermann , Thomas M Freeland , Dinah Qutob , Amy Milsted , Ralf Jauch , Timothy J Triche , Connie M Krawczyk , Caleb P Bupp , Surender Rajasekaran , Mathias Francois , Jeremy W Prokop

Landscape of Germline and Somatic Mitochondrial DNA Mutations in Pediatric Malignancies.

Cancer research

Avec: Petr Triska , Kristiyana Kaneva , Daria Merkurjev , Noor Sohail , Marni J Falk , Timothy J Triche , Jaclyn A Biegel , Xiaowu Gai

Distinctive epigenomic alterations in NF1-deficient cutaneous and plexiform neurofibromas drive differential MKK/p38 signaling.

Epigenetics & chromatin

Avec: Jamie L Grit , Benjamin K Johnson , Patrick S Dischinger , Curt J Essenburg , Marie Adams , Stacy Campbell , Kai Pollard , Christine A Pratilas , Tim J Triche , Carrie R Graveel , Matthew R Steensma

Dysregulated heparan sulfate proteoglycan metabolism promotes Ewing sarcoma tumor growth.

eLife

Avec: Elena Vasileva , Mikako Warren , Timothy J Triche , James F Amatruda

bioRxiv : the preprint server for biology

Avec: Yizhou Peter Huang , Lauren Harmon , Eve Gardner , Xiaotu Ma , Josiah Harsh , Zhaoyu Xue , Hong Wen , Marcel Ramos , Sean Davis , Timothy J Triche

Comprehensive molecular and clinical characterization of

Haematologica

Avec: Eline J M Bertrums , Jenny L Smith , Lauren Harmon , Rhonda E Ries , Yi-Cheng J Wang , Todd A Alonzo , Andrew J Menssen , Karen M Chisholm , Amanda R Leonti , Katherine Tarlock , Fabiana Ostronoff , Era L Pogosova-Agadjanyan , Gertjan J L Kaspers , Henrik Hasle , Michael Dworzak , Christiane Walter , Nora Muhlegger , Cristina Morerio , Laura Pardo , Betsy Hirsch , Susana Raimondi , Todd M Cooper , Richard Aplenc , Alan S Gamis , Edward A Kolb , Jason E Farrar , Derek Stirewalt , Xiaotu Ma , Tim I Shaw , Scott N Furlan , Lisa Eidenschink Brodersen , Michael R Loken , Marry M Van den Heuvel-Eibrink , C Michel Zwaan , Timothy J Triche , Bianca F Goemans , Soheil Meshinchi

Circulating Tumor Cell Count and Overall Survival in Patients With Metastatic Hormone-Sensitive Prostate Cancer.

JAMA network open

Avec: Amir Goldkorn , Catherine Tangen , Melissa Plets , Daniel Bsteh , Tong Xu , Jacek K Pinski , Sue Ingles , Timothy Junius Triche , Gary R MacVicar , Daniel A Vaena , Anthony W Crispino , David James McConkey , Primo N Lara , Maha H A Hussain , David I Quinn , Tanya B Dorff , Seth Paul Lerner , Ian Thompson , Neeraj Agarwal

Integrated Epigenome, Exome, and Transcriptome Analyses Reveal Molecular Subtypes and Homeotic Transformation in Uterine Fibroids.

Cell reports

Avec: Jitu Wilson George , Huihui Fan , Benjamin Johnson , Tyler James Carpenter , Kelly Katherine Foy , Anindita Chatterjee , Amanda Lynn Patterson , Julie Koeman , Marie Adams , Zachary Brian Madaj , David Chesla , Erica Elizabeth Marsh , Timothy Junius Triche , Hui Shen , Jose Manuel Teixeira

EGFR-dependent endocytosis of Wnt9a and Fzd9b promotes β-catenin signaling during hematopoietic stem cell development in zebrafish.

Science signaling

Avec: Nicole Nguyen , Kelsey A Carpenter , Jessica Ensing , Carla Gilliland , Emma J Rudisel , Emily M Mu , Kate E Thurlow , Timothy J Triche , Stephanie Grainger

Developmental priming of cancer susceptibility.

bioRxiv : the preprint server for biology

Avec: Ilaria Panzeri , Luca Fagnocchi , Stefanos Apostle , Megan Tompkins , Emily Wolfrum , Zachary Madaj , Galen Hostetter , Yanqing Liu , Kristen Schaefer , Yang Chih-Hsiang , Alexis Bergsma , Anne Drougard , Erez Dror , Auteur inconnu , Darrell Chandler , Daniel Schramek , Timothy J Triche , J Andrew Pospisilik

Mithramycin induces promoter reprogramming and differentiation of rhabdoid tumor.

EMBO molecular medicine

Avec: Maggie H Chasse , Benjamin K Johnson , Elissa A Boguslawski , Katie M Sorensen , Jessica E Rosien , Min H Kang , C Patrick Reynolds , Lyong Heo , Zachary B Madaj , Ian Beddows , Gabrielle E Foxa , Susan M Kitchen-Goosen , Bart O Williams , Timothy J Triche , Patrick J Grohar

Comprehensive Transcriptome Profiling of Cryptic

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Jenny L Smith , Rhonda E Ries , Tiffany Hylkema , Todd A Alonzo , Robert B Gerbing , Marianne T Santaguida , Lisa Eidenschink Brodersen , Laura Pardo , Carrie L Cummings , Keith R Loeb , Quy Le , Suzan Imren , Amanda R Leonti , Alan S Gamis , Richard Aplenc , E Anders Kolb , Jason E Farrar , Timothy J Triche , Cu Nguyen , Daoud Meerzaman , Michael R Loken , Vivian G Oehler , Hamid Bolouri , Soheil Meshinchi

Mathematical Oncology Comes to the Clinic: A Data-Driven Treatment for Financial Toxicity?

Cancer research

Avec: Timothy J Triche

A B-cell developmental gene regulatory network is activated in infant AML.

PloS one

Avec: Hamid Bolouri , Rhonda Ries , Laura Pardo , Tiffany Hylkema , Wanding Zhou , Jenny L Smith , Amanda Leonti , Michael Loken , Jason E Farrar , Timothy J Triche , Soheil Meshinchi

Integrated DNA Copy Number and Expression Profiling Identifies IGF1R as a Prognostic Biomarker in Pediatric Osteosarcoma.

International journal of molecular sciences

Avec: Aaron M Taylor , Jiayi M Sun , Alexander Yu , Horatiu Voicu , Jianhe Shen , Donald A Barkauskas , Timothy J Triche , Julie M Gastier-Foster , Tsz-Kwong Man , Ching C Lau

EZH2-driven immune evasion defines high-risk pediatric AML with t(16;21)

bioRxiv : the preprint server for biology

Avec: Nathaniel J Buteyn , Connor G Burke , Vincent J Sartori , Eve Deering-Gardner , Zachary J DeBruine , Dahlya Kamarudin , Darrell P Chandler , Alexander C Monovich , Monika W Perez , Joanna S Yi , Rhonda E Ries , Todd A Alonzo , Russell Jh Ryan , Soheil Meshinchi , Timothy J Triche

Mitochondrial DNA haplogroup, genetic ancestry, and susceptibility to Ewing sarcoma.

Mitochondrion

Avec: Kristiyana Kaneva , Theodore G Schurr , Tatiana V Tatarinova , Jonathan Buckley , Daria Merkurjev , Petr Triska , Xiyu Liu , James Done , Dennis T Maglinte , Dennis Deapen , Amie Hwang , Joshua D Schiffman , Timothy J Triche , Jaclyn A Biegel , Xiaowu Gai

CTCF: an R/bioconductor data package of human and mouse CTCF binding sites.

Bioinformatics advances

Avec: Mikhail G Dozmorov , Wancen Mu , Eric S Davis , Stuart Lee , Timothy J Triche , Douglas H Phanstiel , Michael I Love

Long Noncoding RNA Expression Independently Predicts Outcome in Pediatric Acute Myeloid Leukemia.

Journal of clinical oncology : official journal of the American Society of Clinical Oncology

Avec: Jason E Farrar , Jenny L Smith , Megan Othus , Benjamin J Huang , Yi-Cheng Wang , Rhonda Ries , Tiffany Hylkema , Era L Pogosova-Agadjanyan , Sneha Challa , Amanda Leonti , Timothy I Shaw , Timothy J Triche , Alan S Gamis , Richard Aplenc , E Anders Kolb , Xiaotu Ma , Derek L Stirewalt , Todd A Alonzo , Soheil Meshinchi

Réseau de co-auteurs

Soheil Meshinchi 5 collaborations

Jaclyn A Biegel 4 collaborations

Xiaowu Gai 4 collaborations

Jenny L Smith 4 collaborations

Todd A Alonzo 4 collaborations

Jason E Farrar 4 collaborations

Benjamin K Johnson 3 collaborations

Xiaotu Ma 3 collaborations

Rhonda E Ries 3 collaborations

Laura Pardo 3 collaborations

Richard Aplenc 3 collaborations

Alan S Gamis 3 collaborations

Tiffany Hylkema 3 collaborations

Lishuang Shen 2 collaborations

Jennifer Dien Bard 2 collaborations

Alexander R Judkins 2 collaborations

Wanding Zhou 2 collaborations

Ian Beddows 2 collaborations

Lyong Heo 2 collaborations

Hui Shen 2 collaborations

C Patrick Reynolds 2 collaborations

Ching C Lau 2 collaborations

Zachary Madaj 2 collaborations

Petr Triska 2 collaborations

Kristiyana Kaneva 2 collaborations

Daria Merkurjev 2 collaborations

Marie Adams 2 collaborations

Lauren Harmon 2 collaborations

Amanda R Leonti 2 collaborations

Era L Pogosova-Agadjanyan 2 collaborations

Lisa Eidenschink Brodersen 2 collaborations

Michael R Loken 2 collaborations

Timothy Junius Triche 2 collaborations

E Anders Kolb 2 collaborations

Hamid Bolouri 2 collaborations

Rhonda Ries 2 collaborations

Amanda Leonti 2 collaborations

Bruce K Patterson 1 collaboration

Edgar B Francisco 1 collaboration

Ram Yogendra 1 collaboration

Emily Long 1 collaboration

Amruta Pise 1 collaboration

Hallison Rodrigues 1 collaboration

Eric Hall 1 collaboration

Monica Herrera 1 collaboration

Purvi Parikh 1 collaboration

Jose Guevara-Coto 1 collaboration

Paul Scott 1 collaboration

Saboor Hekmati 1 collaboration

Dennis Maglinte 1 collaboration

Xaiolan Chang 1 collaboration

Rodrigo A Mora-Rodríguez 1 collaboration

Javier Mora 1 collaboration

Jacob Morrison 1 collaboration

James Eapen 1 collaboration

Efrat Katsman 1 collaboration

Ayush Semwal 1 collaboration

Walid Abi Habib 1 collaboration

Peter W Laird 1 collaboration

Benjamin P Berman 1 collaboration

Trevor A Burrow 1 collaboration

Balakrishna Koneru 1 collaboration

Shawn J Macha 1 collaboration

Wenyue Sun 1 collaboration

Frederic G Barr 1 collaboration

Gian Luca Negri 1 collaboration

Bruno M Grande 1 collaboration

Alberto Delaidelli 1 collaboration

Amal El-Naggar 1 collaboration

Dawn Cochrane 1 collaboration

Richard A Moore 1 collaboration

Steven Jm Jones 1 collaboration

Alexandre Montpetit 1 collaboration

Marco A Marra 1 collaboration

David Malkin 1 collaboration

Ryan D Morin 1 collaboration

Poul H Sorensen 1 collaboration

Josh Neman 1 collaboration

Meredith Franklin 1 collaboration

Krutika Deshpande 1 collaboration

Gal Sadlik 1 collaboration

John D Carmichael 1 collaboration

Eric Chang 1 collaboration

Cheng Yu 1 collaboration

Ben A Strickland 1 collaboration

Gabriel Zada 1 collaboration

Shengmei Zhou 1 collaboration

Meng Li 1 collaboration

Dejerianne Ostrow 1 collaboration

David Ruble 1 collaboration

Leo Mascarenhas 1 collaboration

Bruce Pawel 1 collaboration

Jonathan David Buckley 1 collaboration

Adam Underwood 1 collaboration

Daniel T Rasicci 1 collaboration

David Hinds 1 collaboration

Jackson T Mitchell 1 collaboration

Jacob K Zieba 1 collaboration

Joshua Mills 1 collaboration

Nicholas E Arnold 1 collaboration

Taylor W Cook 1 collaboration

Mehdi Moustaqil 1 collaboration

Yann Gambin 1 collaboration

Emma Sierecki 1 collaboration

Frank Fontaine 1 collaboration

Sophie Vanderweele 1 collaboration

Akansha S Das 1 collaboration

William Cvammen 1 collaboration

Olivia Sirpilla 1 collaboration

Xavier Soehnlen 1 collaboration

Kristen Bricker 1 collaboration

Maram Alokaili 1 collaboration

Morgan Green 1 collaboration

Sadie Heeringa 1 collaboration

Amy M Wilstermann 1 collaboration

Thomas M Freeland 1 collaboration

Dinah Qutob 1 collaboration

Amy Milsted 1 collaboration

Ralf Jauch 1 collaboration

Connie M Krawczyk 1 collaboration

Caleb P Bupp 1 collaboration

Surender Rajasekaran 1 collaboration

Mathias Francois 1 collaboration

Jeremy W Prokop 1 collaboration

Noor Sohail 1 collaboration

Marni J Falk 1 collaboration

Jamie L Grit 1 collaboration

Patrick S Dischinger 1 collaboration

Curt J Essenburg 1 collaboration

Stacy Campbell 1 collaboration

Kai Pollard 1 collaboration

Christine A Pratilas 1 collaboration

Tim J Triche 1 collaboration

Carrie R Graveel 1 collaboration

Matthew R Steensma 1 collaboration

Elena Vasileva 1 collaboration

Mikako Warren 1 collaboration

James F Amatruda 1 collaboration

Yizhou Peter Huang 1 collaboration

Eve Gardner 1 collaboration

Josiah Harsh 1 collaboration

Zhaoyu Xue 1 collaboration

Hong Wen 1 collaboration

Marcel Ramos 1 collaboration

Sean Davis 1 collaboration

Eline J M Bertrums 1 collaboration

Yi-Cheng J Wang 1 collaboration

Andrew J Menssen 1 collaboration

Karen M Chisholm 1 collaboration

Katherine Tarlock 1 collaboration

Fabiana Ostronoff 1 collaboration

Gertjan J L Kaspers 1 collaboration

Henrik Hasle 1 collaboration

Michael Dworzak 1 collaboration

Christiane Walter 1 collaboration

Nora Muhlegger 1 collaboration

Cristina Morerio 1 collaboration

Betsy Hirsch 1 collaboration

Susana Raimondi 1 collaboration

Todd M Cooper 1 collaboration

Edward A Kolb 1 collaboration

Derek Stirewalt 1 collaboration

Tim I Shaw 1 collaboration

Scott N Furlan 1 collaboration

Marry M Van den Heuvel-Eibrink 1 collaboration

C Michel Zwaan 1 collaboration

Bianca F Goemans 1 collaboration

Amir Goldkorn 1 collaboration

Catherine Tangen 1 collaboration

Melissa Plets 1 collaboration

Daniel Bsteh 1 collaboration

Tong Xu 1 collaboration

Jacek K Pinski 1 collaboration

Sue Ingles 1 collaboration

Gary R MacVicar 1 collaboration

Daniel A Vaena 1 collaboration

Anthony W Crispino 1 collaboration

David James McConkey 1 collaboration

Primo N Lara 1 collaboration

Maha H A Hussain 1 collaboration

David I Quinn 1 collaboration

Tanya B Dorff 1 collaboration

Seth Paul Lerner 1 collaboration

Ian Thompson 1 collaboration

Neeraj Agarwal 1 collaboration

Jitu Wilson George 1 collaboration

Huihui Fan 1 collaboration

Benjamin Johnson 1 collaboration

Tyler James Carpenter 1 collaboration

Kelly Katherine Foy 1 collaboration

Anindita Chatterjee 1 collaboration

Amanda Lynn Patterson 1 collaboration

Julie Koeman 1 collaboration

Zachary Brian Madaj 1 collaboration

David Chesla 1 collaboration

Erica Elizabeth Marsh 1 collaboration

Jose Manuel Teixeira 1 collaboration

Nicole Nguyen 1 collaboration

Kelsey A Carpenter 1 collaboration

Jessica Ensing 1 collaboration

Carla Gilliland 1 collaboration

Emma J Rudisel 1 collaboration

Emily M Mu 1 collaboration

Kate E Thurlow 1 collaboration

Stephanie Grainger 1 collaboration

Ilaria Panzeri 1 collaboration

Luca Fagnocchi 1 collaboration

Stefanos Apostle 1 collaboration

Megan Tompkins 1 collaboration

Emily Wolfrum 1 collaboration

Galen Hostetter 1 collaboration

Yanqing Liu 1 collaboration

Kristen Schaefer 1 collaboration

Yang Chih-Hsiang 1 collaboration

Alexis Bergsma 1 collaboration

Anne Drougard 1 collaboration

Erez Dror 1 collaboration

None None 1 collaboration

Darrell Chandler 1 collaboration

Daniel Schramek 1 collaboration

J Andrew Pospisilik 1 collaboration

Maggie H Chasse 1 collaboration

Elissa A Boguslawski 1 collaboration

Katie M Sorensen 1 collaboration

Jessica E Rosien 1 collaboration

Min H Kang 1 collaboration

Zachary B Madaj 1 collaboration

Gabrielle E Foxa 1 collaboration

Susan M Kitchen-Goosen 1 collaboration

Bart O Williams 1 collaboration

Patrick J Grohar 1 collaboration

Robert B Gerbing 1 collaboration

Marianne T Santaguida 1 collaboration

Carrie L Cummings 1 collaboration

Keith R Loeb 1 collaboration

Quy Le 1 collaboration

Suzan Imren 1 collaboration

Cu Nguyen 1 collaboration

Daoud Meerzaman 1 collaboration

Vivian G Oehler 1 collaboration

Michael Loken 1 collaboration

Aaron M Taylor 1 collaboration

Jiayi M Sun 1 collaboration

Alexander Yu 1 collaboration

Horatiu Voicu 1 collaboration

Jianhe Shen 1 collaboration

Donald A Barkauskas 1 collaboration

Julie M Gastier-Foster 1 collaboration

Tsz-Kwong Man 1 collaboration

Nathaniel J Buteyn 1 collaboration

Connor G Burke 1 collaboration

Vincent J Sartori 1 collaboration

Eve Deering-Gardner 1 collaboration

Zachary J DeBruine 1 collaboration

Dahlya Kamarudin 1 collaboration

Darrell P Chandler 1 collaboration

Alexander C Monovich 1 collaboration

Monika W Perez 1 collaboration

Joanna S Yi 1 collaboration

Russell Jh Ryan 1 collaboration

Theodore G Schurr 1 collaboration

Tatiana V Tatarinova 1 collaboration

Jonathan Buckley 1 collaboration

Xiyu Liu 1 collaboration

James Done 1 collaboration

Dennis T Maglinte 1 collaboration

Dennis Deapen 1 collaboration

Amie Hwang 1 collaboration

Joshua D Schiffman 1 collaboration

Mikhail G Dozmorov 1 collaboration

Wancen Mu 1 collaboration

Eric S Davis 1 collaboration

Stuart Lee 1 collaboration

Douglas H Phanstiel 1 collaboration

Michael I Love 1 collaboration

Megan Othus 1 collaboration

Benjamin J Huang 1 collaboration

Yi-Cheng Wang 1 collaboration

Sneha Challa 1 collaboration

Timothy I Shaw 1 collaboration

Derek L Stirewalt 1 collaboration