Markus Ralser

Affiliations
  • Department of Biochemistry, University of Cambridge, Cambridge, UK. markus.ralser@crick.ac.uk.
  • The Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK. markus.ralser@crick.ac.uk.
  • Department of Biochemistry, Charité University Medicine, Berlin, Germany. markus.ralser@crick.ac.uk.

Publications (67)

Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism.

Nature
Avec: Viridiana Olin-Sandoval , Jason Shu Lim Yu , Leonor Miller-Fleming , Mohammad Tauqeer Alam , Stephan Kamrad , Clara Correia-Melo , Robert Haas , Joanna Segal , David Alejandro Peña Navarro , Lucia Herrera-Dominguez , Oscar Méndez-Lucio , Jakob Vowinckel , Michael Mülleder , Markus Ralser

Cysteine and iron accelerate the formation of ribose-5-phosphate, providing insights into the evolutionary origins of the metabolic network structure.

PLoS biology
Avec: Gabriel Piedrafita , Sreejith J Varma , Cecilia Castro , Christoph B Messner , Lukasz Szyrwiel , Julian L Griffin , Markus Ralser

Ribosome profiling reveals ribosome stalling on tryptophan codons and ribosome queuing upon oxidative stress in fission yeast.

Nucleic acids research
Avec: Angela Rubio , Sanjay Ghosh , Michael Mülleder , Markus Ralser , Juan Mata

Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance.

Nature microbiology
Avec: Jason S L Yu , Clara Correia-Melo , Francisco Zorrilla , Lucia Herrera-Dominguez , Mary Y Wu , Johannes Hartl , Kate Campbell , Sonja Blasche , Marco Kreidl , Anna-Sophia Egger , Christoph B Messner , Vadim Demichev , Anja Freiwald , Michael Mülleder , Michael Howell , Judith Berman , Kiran R Patil , Mohammad Tauqeer Alam , Markus Ralser

Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast.

bioRxiv : the preprint server for biology
Avec: E Teyssonnière , P Trébulle , J Muenzner , V Loegler , D Ludwig , F Amari , M Mülleder , A Friedrich , J Hou , M Ralser , J Schacherer

The brain reacting to COVID-19: analysis of the cerebrospinal fluid proteome, RNA and inflammation.

Journal of neuroinflammation
Avec: Dirk Reinhold , Vadim Farztdinov , Yan Yan , Christian Meisel , Henrik Sadlowski , Joachim Kühn , Frank H Perschel , Matthias Endres , Emrah Düzel , Stefan Vielhaber , Karina Guttek , Alexander Goihl , Morten Venø , Bianca Teegen , Winfried Stöcker , Paula Stubbemann , Florian Kurth , Leif E Sander , Markus Ralser , Carolin Otto , Simon Streit , Sven Jarius , Klemens Ruprecht , Helena Radbruch , Jørgen Kjems , Michael Mülleder , Frank Heppner , Peter Körtvelyessy

Inorganic sulfur fixation via a new homocysteine synthase allows yeast cells to cooperatively compensate for methionine auxotrophy.

PLoS biology
Avec: Jason S L Yu , Benjamin M Heineike , Johannes Hartl , Simran K Aulakh , Clara Correia-Melo , Andrea Lehmann , Oliver Lemke , Federica Agostini , Cory T Lee , Vadim Demichev , Christoph B Messner , Michael Mülleder , Markus Ralser

Metabolic heterogeneity and cross-feeding within isogenic yeast populations captured by DILAC.

Nature microbiology
Avec: Stephan Kamrad , Clara Correia-Melo , Lukasz Szyrwiel , Simran Kaur Aulakh , Jürg Bähler , Vadim Demichev , Michael Mülleder , Markus Ralser

Cystatin C is glucocorticoid responsive, directs recruitment of Trem2+ macrophages, and predicts failure of cancer immunotherapy.

Cell genomics
Avec: Sam O Kleeman , Tuba Mansoor Thakir , Breanna Demestichas , Nicholas Mourikis , Dominik Loiero , Miriam Ferrer , Sean Bankier , Yosef J R A Riazat-Kesh , Hassal Lee , Dimitrios Chantzichristos , Claire Regan , Jonathan Preall , Sarthak Sinha , Nicole Rosin , Bryan Yipp , Luiz G N de Almeida , Jeff Biernaskie , Antoine Dufour , Pinkus Tober-Lau , Arno Ruusalepp , Johan L M Bjorkegren , Markus Ralser , Florian Kurth , Vadim Demichev , Todd Heywood , Qing Gao , Gudmundur Johannsson , Viktor H Koelzer , Brian R Walker , Hannah V Meyer , Tobias Janowitz

The pentose phosphate pathway in health and disease.

Nature metabolism
Avec: Tara TeSlaa , Markus Ralser , Jing Fan , Joshua D Rabinowitz

Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast.

Proceedings of the National Academy of Sciences of the United States of America
Avec: Elie Marcel Teyssonnière , Pauline Trébulle , Julia Muenzner , Victor Loegler , Daniela Ludwig , Fatma Amari , Michael Mülleder , Anne Friedrich , Jing Hou , Markus Ralser , Joseph Schacherer

SARS-CoV-2 tropism to intestinal but not gastric epithelial cells is defined by limited ACE2 expression.

Stem cell reports
Avec: Mindaugas Paužuolis , Diana Fatykhova , Boris Zühlke , Torsten Schwecke , Mastura Neyazi , Pilar Samperio-Ventayol , Carmen Aguilar , Nicolas Schlegel , Simon Dökel , Markus Ralser , Andreas Hocke , Christine Krempl , Sina Bartfeld

Complementary Activity of ETV5, RBPJ, and TCF3 Drives Formative Transition from Naive Pluripotency.

Cell stem cell
Avec: Tüzer Kalkan , Susanne Bornelöv , Carla Mulas , Evangelia Diamanti , Tim Lohoff , Meryem Ralser , Sjors Middelkamp , Patrick Lombard , Jennifer Nichols , Austin Smith

Time-resolved in vivo ubiquitinome profiling by DIA-MS reveals USP7 targets on a proteome-wide scale.

Nature communications
Avec: Martin Steger , Vadim Demichev , Mattias Backman , Uli Ohmayer , Phillip Ihmor , Stefan Müller , Markus Ralser , Henrik Daub

Extraction and Integration of Genetic Networks from Short-Profile Omic Data Sets.

Metabolites
Avec: Jacopo Iacovacci , Alina Peluso , Timothy Ebbels , Markus Ralser , Robert C Glen

Amino Acids Whose Intracellular Levels Change Most During Aging Alter Chronological Life Span of Fission Yeast.

The journals of gerontology. Series A, Biological sciences and medical sciences
Avec: Charalampos Rallis , Michael Mülleder , Graeme Smith , Yan Zi Au , Markus Ralser , Jürg Bähler

Pre-activated antiviral innate immunity in the upper airways controls early SARS-CoV-2 infection in children.

Nature biotechnology
Avec: J Loske , J Röhmel , S Lukassen , S Stricker , V G Magalhães , J Liebig , R L Chua , L Thürmann , M Messingschlager , A Seegebarth , B Timmermann , S Klages , M Ralser , B Sawitzki , L E Sander , V M Corman , C Conrad , S Laudi , M Binder , S Trump , R Eils , M A Mall , I Lehmann

Metabolic decisions in development and disease-a Keystone Symposia report.

Annals of the New York Academy of Sciences
Avec: Jennifer Cable , Olivier Pourquié , Kathryn E Wellen , Lydia W S Finley , Alexander Aulehla , Alex P Gould , Aurelio Teleman , William B Tu , Wendy Sarah Garrett , Irene Miguel-Aliaga , Norbert Perrimon , Lora V Hooper , A J Marian Walhout , Wei Wei , Theodore Alexandrov , Ayelet Erez , Markus Ralser , Joshua D Rabinowitz , Anupama Hemalatha , Paula Gutiérrez-Pérez , Navdeep S Chandel , Jared Rutter , Jason W Locasale , Juan C Landoni , Heather Christofk

Monogenic Disorders of ROS Production and the Primary Anti-Oxidative Defense.

Biomolecules
Avec: Nana-Maria Grüning , Markus Ralser

ISG15 blocks cardiac glycolysis and ensures sufficient mitochondrial energy production during Coxsackievirus B3 infection.

Cardiovascular research
Avec: Clara Bredow , Fabien Thery , Eva Katrin Wirth , Sarah Ochs , Meike Kespohl , Gunnar Kleinau , Nicolas Kelm , Niclas Gimber , Jan Schmoranzer , Martin Voss , Karin Klingel , Joachim Spranger , Kostja Renko , Markus Ralser , Michael Mülleder , Arnd Heuser , Klaus-Peter Knobeloch , Patrick Scheerer , Jennifer Kirwan , Ulrike Brüning , Nikolaus Berndt , Francis Impens , Antje Beling

Parallel Differentiation and Plastic Adjustment of Leaf Anatomy in Alpine

Plants (Basel, Switzerland)
Avec: Clara Bertel , Dominik Kaplenig , Maria Ralser , Erwann Arc , Filip Kolář , Guillaume Wos , Karl Hülber , Andreas Holzinger , Ilse Kranner , Gilbert Neuner

High-throughput proteomics of nanogram-scale samples with Zeno SWATH MS.

eLife
Avec: Ziyue Wang , Michael Mülleder , Ihor Batruch , Anjali Chelur , Kathrin Textoris-Taube , Torsten Schwecke , Johannes Hartl , Jason Causon , Jose Castro-Perez , Vadim Demichev , Stephen Tate , Markus Ralser

90K/LGALS3BP expression is upregulated in COVID-19 but may not restrict SARS-CoV-2 infection.

Clinical and experimental medicine
Avec: Laure Bosquillon de Jarcy , Bengisu Akbil , Baxolele Mhlekude , Johanna Leyens , Dylan Postmus , Greta Harnisch , Jenny Jansen , Marie L Schmidt , Annette Aigner , Fabian Pott , Robert Lorenz Chua , Lilian Krist , Roberta Gentile , Barbara Mühlemann , Terence C Jones , Daniela Niemeyer , Julia Fricke , Thomas Keil , Tobias Pischon , Jürgen Janke , Christian Conrad , Stefano Iacobelli , Christian Drosten , Victor M Corman , Markus Ralser , Roland Eils , Florian Kurth , Leif Sander , Christine Goffinet

Spontaneously established syntrophic yeast communities improve bioproduction.

Nature chemical biology
Avec: Simran Kaur Aulakh , Lara Sellés Vidal , Eric J South , Huadong Peng , Sreejith Jayasree Varma , Lucia Herrera-Dominguez , Markus Ralser , Rodrigo Ledesma-Amaro

Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics.

Nature biomedical engineering
Avec: Matthew E H White , Ludwig R Sinn , D Marc Jones , Joost de Folter , Simran Kaur Aulakh , Ziyue Wang , Helen R Flynn , Lynn Krüger , Pinkus Tober-Lau , Vadim Demichev , Florian Kurth , Michael Mülleder , Véronique Blanchard , Christoph B Messner , Markus Ralser

Addressing Global Environmental Challenges to Mental Health Using Population Neuroscience: A Review.

JAMA psychiatry
Avec: Gunter Schumann , Ole A Andreassen , Tobias Banaschewski , Vince D Calhoun , Nicholas Clinton , Sylvane Desrivieres , Ragnhild Eek Brandlistuen , Jianfeng Feng , Soeren Hese , Esther Hitchen , Per Hoffmann , Tianye Jia , Viktor Jirsa , Andre F Marquand , Frauke Nees , Markus M Nöthen , Gaia Novarino , Elli Polemiti , Markus Ralser , Michael Rapp , Kerstin Schepanski , Tamara Schikowski , Mel Slater , Peter Sommer , Bernd Carsten Stahl , Paul M Thompson , Sven Twardziok , Dennis van der Meer , Henrik Walter , Lars Westlye , Auteur inconnu

Increased RNA and protein degradation is required for counteracting transcriptional burden and proteotoxic stress in human aneuploid cells.

Cancer discovery
Avec: Marica Rosaria Ippolito , Johanna Zerbib , Yonatan Eliezer , Eli Reuveni , Sonia Vigano , Giuseppina De Feudis , Eldad D Shulman , Anouk Savir Kadmon , Rachel Slutsky , Tiangen Chang , Emma M Campagnolo , Silvia Taglietti , Simone Scorzoni , Sara Gianotti , Sara Martin , Julia Muenzner , Michael Mulleder , Nir Rozenblum , Carmela Rubolino , Tal Ben-Yishay , Kathrin Laue , Yael Cohen-Sharir , Ilaria Vigorito , Francesco Nicassio , Eytan Ruppin , Markus Ralser , Francisca Vazquez , Stefano Santaguida , Uri Ben-David

The Nucleosome Remodelling and Deacetylation complex suppresses transcriptional noise during lineage commitment.

The EMBO journal
Avec: Thomas Burgold , Michael Barber , Susan Kloet , Julie Cramard , Sarah Gharbi , Robin Floyd , Masaki Kinoshita , Meryem Ralser , Michiel Vermeulen , Nicola Reynolds , Sabine Dietmann , Brian Hendrich

Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance.

Molecular systems biology
Avec: Stephan Kamrad , Jan Grossbach , Maria Rodríguez-López , Michael Mülleder , StJohn Townsend , Valentina Cappelletti , Gorjan Stojanovski , Clara Correia-Melo , Paola Picotti , Andreas Beyer , Markus Ralser , Jürg Bähler

Mitochondrial respiration is required to provide amino acids during fermentative proliferation of fission yeast.

EMBO reports
Avec: Michal Malecki , Stephan Kamrad , Markus Ralser , Jürg Bähler

Recombination and biased segregation of mitochondrial genomes during crossing and meiosis of different

microPublication biology
Avec: Stephan Kamrad , María Rodríguez-López , Shoumit Dey , Mimoza Hoti , Henry Wallace , Markus Ralser , Jürg Bähler

Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19.

Nature communications
Avec: Geraldine Nouailles , Emanuel Wyler , Peter Pennitz , Dylan Postmus , Daria Vladimirova , Julia Kazmierski , Fabian Pott , Kristina Dietert , Michael Muelleder , Vadim Farztdinov , Benedikt Obermayer , Sandra-Maria Wienhold , Sandro Andreotti , Thomas Hoefler , Birgit Sawitzki , Christian Drosten , Leif E Sander , Norbert Suttorp , Markus Ralser , Dieter Beule , Achim D Gruber , Christine Goffinet , Markus Landthaler , Jakob Trimpert , Martin Witzenrath

Functional profiling of long intergenic non-coding RNAs in fission yeast.

eLife
Avec: Maria Rodriguez-Lopez , Shajahan Anver , Cristina Cotobal , Stephan Kamrad , Michal Malecki , Clara Correia-Melo , Mimoza Hoti , StJohn Townsend , Samuel Marguerat , Sheng Kai Pong , Mary Y Wu , Luis Montemayor , Michael Howell , Markus Ralser , Jürg Bähler

Spermidine reduces neuroinflammation and soluble amyloid beta in an Alzheimer's disease mouse model.

Journal of neuroinflammation
Avec: Kiara Freitag , Nele Sterczyk , Sarah Wendlinger , Benedikt Obermayer , Julia Schulz , Vadim Farztdinov , Michael Mülleder , Markus Ralser , Judith Houtman , Lara Fleck , Caroline Braeuning , Roberto Sansevrino , Christian Hoffmann , Dragomir Milovanovic , Stephan J Sigrist , Thomas Conrad , Dieter Beule , Frank L Heppner , Marina Jendrach

Human umbilical cord mesenchymal stem cell-derived treatment of severe pulmonary arterial hypertension.

Nature cardiovascular research
Avec: Georg Hansmann , Philippe Chouvarine , Franziska Diekmann , Martin Giera , Markus Ralser , Michael Mülleder , Constantin von Kaisenberg , Harald Bertram , Ekaterina Legchenko , Ralf Hass

Intestinal epithelial c-Maf expression determines enterocyte differentiation and nutrient uptake in mice.

The Journal of experimental medicine
Avec: Catalina Cosovanu , Philipp Resch , Stefan Jordan , Andrea Lehmann , Markus Ralser , Vadim Farztdinov , Joachim Spranger , Michael Mülleder , Sebastian Brachs , Christian Neumann

Metal ion availability and homeostasis as drivers of metabolic evolution and enzyme function.

Current opinion in genetics & development
Avec: Simran Kaur Aulakh , Sreejith Jayasree Varma , Markus Ralser

Cystatin C is associated with adverse COVID-19 outcomes in diverse populations.

iScience
Avec: Sam O Kleeman , Mattia Cordioli , Paul R H J Timmers , Atlas Khan , Pinkus Tober-Lau , Florian Kurth , Vadim Demichev , Hannah V Meyer , James F Wilson , Markus Ralser , Krzysztof Kiryluk , Andrea Ganna , Kenneth Baillie , Tobias Janowitz

Functional proteomic profiling links deficient DNA clearance with increased mortality in individuals with severe COVID-19 pneumonia.

Immunity
Avec: Iker Valle Aramburu , Dennis Hoving , Spyros I Vernardis , Martha C F Tin , Marianna Ioannou , Mia I Temkin , Nathalia M De Vasconcelos , Vadim Demichev , Elisa Theresa Helbig , Lena Lippert , Klaus Stahl , Matthew White , Helena Radbruch , Jana Ihlow , David Horst , Scott T Chiesa , John E Deanfield , Sascha David , Christian Bode , Florian Kurth , Markus Ralser , Venizelos Papayannopoulos

Mass spectrometry-based high-throughput proteomics and its role in biomedical studies and systems biology.

Proteomics
Avec: Christoph B Messner , Vadim Demichev , Ziyue Wang , Johannes Hartl , Georg Kustatscher , Michael Mülleder , Markus Ralser

Integration of protein context improves protein-based COVID-19 patient stratification.

Clinical proteomics
Avec: Jinlong Gao , Jiale He , Fangfei Zhang , Qi Xiao , Xue Cai , Xiao Yi , Siqi Zheng , Ying Zhang , Donglian Wang , Guangjun Zhu , Jing Wang , Bo Shen , Markus Ralser , Tiannan Guo , Yi Zhu

Cell-cell metabolite exchange creates a pro-survival metabolic environment that extends lifespan.

Cell
Avec: Clara Correia-Melo , Stephan Kamrad , Roland Tengölics , Christoph B Messner , Pauline Trebulle , StJohn Townsend , Sreejith Jayasree Varma , Anja Freiwald , Benjamin M Heineike , Kate Campbell , Lucía Herrera-Dominguez , Simran Kaur Aulakh , Lukasz Szyrwiel , Jason S L Yu , Aleksej Zelezniak , Vadim Demichev , Michael Mülleder , Balázs Papp , Mohammad Tauqeer Alam , Markus Ralser

RECAST: Study protocol for an observational study for the understanding of the increased REsilience of Children compared to Adults in SARS-CoV-2 infecTion.

BMJ open
Avec: Sebastian Stricker , Niklas Ziegahn , Martin Karsten , Thomas Boeckel , Heike Stich-Boeckel , Jakob Maske , Evelyn Rugo , Anita Balazs , Pamela Millar Büchner , Chantip Dang-Heine , Valentin Schriever , Roland Eils , Irina Lehmann , Leif E Sander , Markus Ralser , Victor M Corman , Marcus A Mall , Birgit Sawitzki , Jobst Roehmel

Increasing the throughput of sensitive proteomics by plexDIA.

Nature biotechnology
Avec: Jason Derks , Andrew Leduc , Georg Wallmann , R Gray Huffman , Matthew Willetts , Saad Khan , Harrison Specht , Markus Ralser , Vadim Demichev , Nikolai Slavov

Proteomic and transcriptomic profiling of brainstem, cerebellum and olfactory tissues in early- and late-phase COVID-19.

Nature neuroscience
Avec: Josefine Radke , Jenny Meinhardt , Tom Aschman , Robert Lorenz Chua , Vadim Farztdinov , Sören Lukassen , Foo Wei Ten , Ekaterina Friebel , Naveed Ishaque , Jonas Franz , Valerie Helena Huhle , Ronja Mothes , Kristin Peters , Carolina Thomas , Shirin Schneeberger , Elisa Schumann , Leona Kawelke , Julia Jünger , Viktor Horst , Simon Streit , Regina von Manitius , Péter Körtvélyessy , Stefan Vielhaber , Dirk Reinhold , Anja E Hauser , Anja Osterloh , Philipp Enghard , Jana Ihlow , Sefer Elezkurtaj , David Horst , Florian Kurth , Marcel A Müller , Nils C Gassen , Julia Melchert , Katharina Jechow , Bernd Timmermann , Camila Fernandez-Zapata , Chotima Böttcher , Werner Stenzel , Elke Krüger , Markus Landthaler , Emanuel Wyler , Victor Corman , Christine Stadelmann , Markus Ralser , Roland Eils , Frank L Heppner , Michael Mülleder , Christian Conrad , Helena Radbruch

Metabolic exchanges are ubiquitous in natural microbial communities.

Nature microbiology
Avec: Christian Kost , Kiran Raosaheb Patil , Jonathan Friedman , Sarahi L Garcia , Markus Ralser

Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection.

Cell systems
Avec: Christoph B Messner , Vadim Demichev , Daniel Wendisch , Laura Michalick , Matthew White , Anja Freiwald , Kathrin Textoris-Taube , Spyros I Vernardis , Anna-Sophia Egger , Marco Kreidl , Daniela Ludwig , Christiane Kilian , Federica Agostini , Aleksej Zelezniak , Charlotte Thibeault , Moritz Pfeiffer , Stefan Hippenstiel , Andreas Hocke , Christof von Kalle , Archie Campbell , Caroline Hayward , David J Porteous , Riccardo E Marioni , Claudia Langenberg , Kathryn S Lilley , Wolfgang M Kuebler , Michael Mülleder , Christian Drosten , Norbert Suttorp , Martin Witzenrath , Florian Kurth , Leif Erik Sander , Markus Ralser

Genetic architecture of host proteins interacting with SARS-CoV-2.

bioRxiv : the preprint server for biology
Avec: Maik Pietzner , Eleanor Wheeler , Julia Carrasco-Zanini , Johannes Raffler , Nicola D Kerrison , Erin Oerton , Victoria P W Auyeung , Jian'an Luan , Chris Finan , Juan P Casas , Rachel Ostroff , Steve A Williams , Gabi Kastenmüller , Markus Ralser , Eric R Gamazon , Nicholas J Wareham , Aroon D Hingorani , Claudia Langenberg

DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput.

Nature methods
Avec: Vadim Demichev , Christoph B Messner , Spyros I Vernardis , Kathryn S Lilley , Markus Ralser

Low catalytic activity is insufficient to induce disease pathology in triosephosphate isomerase deficiency.

Journal of inherited metabolic disease
Avec: Joanna Segal , Michael Mülleder , Antje Krüger , Thure Adler , Manuela Scholze-Wittler , Lore Becker , Julia Calzada-Wack , Lillian Garrett , Sabine M Hölter , Birgit Rathkolb , Jan Rozman , Ildiko Racz , Ralf Fischer , Dirk H Busch , Frauke Neff , Martin Klingenspor , Thomas Klopstock , Nana-Maria Grüning , Steve Michel , Beata Lukaszewska-McGreal , Ingo Voigt , Ludger Hartmann , Bernd Timmermann , Hans Lehrach , Eckhard Wolf , Wolfgang Wurst , Valérie Gailus-Durner , Helmut Fuchs , Martin H de Angelis , Heinrich Schrewe , Mariia Yuneva , Markus Ralser

Self-Establishing Communities: A Yeast Model to Study the Physiological Impact of Metabolic Cooperation in Eukaryotic Cells.

Methods in molecular biology (Clifton, N.J.)
Avec: Kate Campbell , Clara Correia-Melo , Markus Ralser

Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity.

Current biology : CB
Avec: Toni I Gossmann , Achchuthan Shanmugasundram , Stefan Börno , Ludovic Duvaux , Christophe Lemaire , Heiner Kuhl , Sven Klages , Lee D Roberts , Sophia Schade , Johanna M Gostner , Falk Hildebrand , Jakob Vowinckel , Coraline Bichet , Michael Mülleder , Enrica Calvani , Aleksej Zelezniak , Julian L Griffin , Peer Bork , Dominique Allaine , Aurélie Cohas , John J Welch , Bernd Timmermann , Markus Ralser

Evolthon: A community endeavor to evolve lab evolution.

PLoS biology
Avec: Sivan Kaminski Strauss , Dvir Schirman , Ghil Jona , Aaron N Brooks , Aditya M Kunjapur , Alex N Nguyen Ba , Alice Flint , Andras Solt , Andreas Mershin , Atray Dixit , Avihu H Yona , Bálint Csörgő , Bede Phillip Busby , Bianca P Hennig , Csaba Pál , Daniel Schraivogel , Daniel Schultz , David G Wernick , Deepa Agashe , Dikla Levi , Dmitry Zabezhinsky , Dor Russ , Ehud Sass , Einat Tamar , Elad Herz , Emmanuel D Levy , George M Church , Idan Yelin , Iftach Nachman , Jeffrey E Gerst , Joseph M Georgeson , Katarzyna P Adamala , Lars M Steinmetz , Marc Rübsam , Markus Ralser , Michael Klutstein , Michael M Desai , Nilima Walunjkar , Ning Yin , Noa Aharon Hefetz , Noah Jakimo , Olga Snitser , Omri Adini , Prashant Kumar , Rachel Soo Hoo Smith , Razi Zeidan , Ronen Hazan , Roni Rak , Roy Kishony , Shannon Johnson , Shira Nouriel , Sibylle C Vonesch , Simmie Foster , Tal Dagan , Tanita Wein , Thrasyvoulos Karydis , Timothy M Wannier , Timothy Stiles , Viridiana Olin-Sandoval , William F Mueller , Yinon M Bar-On , Orna Dahan , Yitzhak Pilpel

Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency.

The EMBO journal
Avec: Andreas Lackner , Robert Sehlke , Marius Garmhausen , Giuliano Giuseppe Stirparo , Michelle Huth , Fabian Titz-Teixeira , Petra van der Lelij , Julia Ramesmayer , Henry F Thomas , Meryem Ralser , Laura Santini , Elena Galimberti , Mihail Sarov , A Francis Stewart , Austin Smith , Andreas Beyer , Martin Leeb

Slow Growth and Increased Spontaneous Mutation Frequency in Respiratory Deficient

G3 (Bethesda, Md.)
Avec: Jing Li , Mark Rinnerthaler , Johannes Hartl , Manuela Weber , Thomas Karl , Hannelore Breitenbach-Koller , Michael Mülleder , Jakob Vowinckel , Hans Marx , Michael Sauer , Diethard Mattanovich , Özge Ata , Sonakshi De , Gregor P Greslehner , Florian Geltinger , Bill Burhans , Chris Grant , Victoria Doronina , Meryem Ralser , Maria Karolin Streubel , Christian Grabner , Stefanie Jarolim , Claudia Moßhammer , Campbell W Gourlay , Jiri Hasek , Paul J Cullen , Gianni Liti , Markus Ralser , Michael Breitenbach

The metabolic growth limitations of petite cells lacking the mitochondrial genome.

Nature metabolism
Avec: Jakob Vowinckel , Johannes Hartl , Hans Marx , Martin Kerick , Kathrin Runggatscher , Markus A Keller , Michael Mülleder , Jason Day , Manuela Weber , Mark Rinnerthaler , Jason S L Yu , Simran Kaur Aulakh , Andrea Lehmann , Diethard Mattanovich , Bernd Timmermann , Nianshu Zhang , Cory D Dunn , James I MacRae , Michael Breitenbach , Markus Ralser

A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study.

EClinicalMedicine
Avec: Ziyue Wang , Adam Cryar , Oliver Lemke , Pinkus Tober-Lau , Daniela Ludwig , Elisa Theresa Helbig , Stefan Hippenstiel , Leif-Erik Sander , Daniel Blake , Catherine S Lane , Rebekah L Sayers , Christoph Mueller , Johannes Zeiser , StJohn Townsend , Vadim Demichev , Michael Mülleder , Florian Kurth , Ernestas Sirka , Johannes Hartl , Markus Ralser

dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.

Nature communications
Avec: Vadim Demichev , Lukasz Szyrwiel , Fengchao Yu , Guo Ci Teo , George Rosenberger , Agathe Niewienda , Daniela Ludwig , Jens Decker , Stephanie Kaspar-Schoenefeld , Kathryn S Lilley , Michael Mülleder , Alexey I Nesvizhskii , Markus Ralser

Global analysis of cytosine and adenine DNA modifications across the tree of life.

eLife
Avec: Sreejith Jayasree Varma , Enrica Calvani , Nana-Maria Grüning , Christoph B Messner , Nicholas Grayson , Floriana Capuano , Michael Mülleder , Markus Ralser

Microbe capture by splenic macrophages triggers sepsis via T cell-death-dependent neutrophil lifespan shortening.

Nature communications
Avec: Marianna Ioannou , Dennis Hoving , Iker Valle Aramburu , Mia I Temkin , Nathalia M De Vasconcelos , Theodora-Dorita Tsourouktsoglou , Qian Wang , Stefan Boeing , Robert Goldstone , Spyros Vernardis , Vadim Demichev , Markus Ralser , Sascha David , Klaus Stahl , Christian Bode , Venizelos Papayannopoulos

The human host response to monkeypox infection: a proteomic case series study.

EMBO molecular medicine
Avec: Ziyue Wang , Pinkus Tober-Lau , Vadim Farztdinov , Oliver Lemke , Torsten Schwecke , Sarah Steinbrecher , Julia Muenzner , Helene Kriedemann , Leif Erik Sander , Johannes Hartl , Michael Mülleder , Markus Ralser , Florian Kurth

A proteomic survival predictor for COVID-19 patients in intensive care.

PLOS digital health
Avec: Vadim Demichev , Pinkus Tober-Lau , Tatiana Nazarenko , Oliver Lemke , Simran Kaur Aulakh , Harry J Whitwell , Annika Röhl , Anja Freiwald , Mirja Mittermaier , Lukasz Szyrwiel , Daniela Ludwig , Clara Correia-Melo , Lena J Lippert , Elisa T Helbig , Paula Stubbemann , Nadine Olk , Charlotte Thibeault , Nana-Maria Grüning , Oleg Blyuss , Spyros Vernardis , Matthew White , Christoph B Messner , Michael Joannidis , Thomas Sonnweber , Sebastian J Klein , Alex Pizzini , Yvonne Wohlfarter , Sabina Sahanic , Richard Hilbe , Benedikt Schaefer , Sonja Wagner , Felix Machleidt , Carmen Garcia , Christoph Ruwwe-Glösenkamp , Tilman Lingscheid , Laure Bosquillon de Jarcy , Miriam S Stegemann , Moritz Pfeiffer , Linda Jürgens , Sophy Denker , Daniel Zickler , Claudia Spies , Andreas Edel , Nils B Müller , Philipp Enghard , Aleksej Zelezniak , Rosa Bellmann-Weiler , Günter Weiss , Archie Campbell , Caroline Hayward , David J Porteous , Riccardo E Marioni , Alexander Uhrig , Heinz Zoller , Judith Löffler-Ragg , Markus A Keller , Ivan Tancevski , John F Timms , Alexey Zaikin , Stefan Hippenstiel , Michael Ramharter , Holger Müller-Redetzky , Martin Witzenrath , Norbert Suttorp , Kathryn Lilley , Michael Mülleder , Leif Erik Sander , Auteur inconnu , Florian Kurth , Markus Ralser

The GAPDH redox switch safeguards reductive capacity and enables survival of stressed tumour cells.

Nature metabolism
Avec: Deepti Talwar , Colin G Miller , Justus Grossmann , Lukasz Szyrwiel , Torsten Schwecke , Vadim Demichev , Ana-Matea Mikecin Drazic , Anand Mayakonda , Pavlo Lutsik , Carmen Veith , Michael D Milsom , Karin Müller-Decker , Michael Mülleder , Markus Ralser , Tobias P Dick

MSBooster: improving peptide identification rates using deep learning-based features.

Nature communications
Avec: Kevin L Yang , Fengchao Yu , Guo Ci Teo , Kai Li , Vadim Demichev , Markus Ralser , Alexey I Nesvizhskii

Interkingdom interactions between Pseudomonas aeruginosa and Candida albicans affect clinical outcomes and antimicrobial responses.

Current opinion in microbiology
Avec: Lisa J Kahl , Nina Stremmel , M Alejandra Esparza-Mora , Rachel M Wheatley , R Craig MacLean , Markus Ralser

eLife
Avec: Stephan Kamrad , María Rodríguez-López , Cristina Cotobal , Clara Correia-Melo , Markus Ralser , Jürg Bähler

A mouse model for intellectual disability caused by mutations in the X-linked 2'‑O‑methyltransferase Ftsj1 gene.

Biochimica et biophysica acta. Molecular basis of disease
Avec: Lars R Jensen , Lillian Garrett , Sabine M Hölter , Birgit Rathkolb , Ildikó Rácz , Thure Adler , Cornelia Prehn , Wolfgang Hans , Jan Rozman , Lore Becker , Juan Antonio Aguilar-Pimentel , Oliver Puk , Kristin Moreth , Monika Dopatka , Diego J Walther , Viola von Bohlen Und Halbach , Matthias Rath , Martin Delatycki , Bettina Bert , Heidrun Fink , Katharina Blümlein , Markus Ralser , Anke Van Dijck , Frank Kooy , Zornitza Stark , Sabine Müller , Harry Scherthan , Jozef Gecz , Wolfgang Wurst , Eckhard Wolf , Andreas Zimmer , Martin Klingenspor , Jochen Graw , Thomas Klopstock , Dirk Busch , Jerzy Adamski , Helmut Fuchs , Valérie Gailus-Durner , Martin Hrabě de Angelis , Oliver von Bohlen Und Halbach , Hans-Hilger Ropers , Andreas W Kuss

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