Jillian Phallen

Affiliations

Johns Hopkins University School of Medicine, Baltimore, MD, United States.

Publications (19)

Elucidating the heterogeneity of immunotherapy response and immune-related toxicities by longitudinal ctDNA and immune cell compartment tracking in lung cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Joseph C Murray , Lavanya Sivapalan , Karlijn Hummelink , Archana Balan , James R White , Noushin Niknafs , Lamia Rhymee , Gavin Pereira , Nisha Rao , Benny Weksler , Nathan Bahary , Jillian Phallen , Alessandro Leal , David L Bartlett , Kristen A Marrone , Jarushka Naidoo , Akul Goel , Benjamin Levy , Samuel Rosner , Christine L Hann , Susan C Scott , Josephine Feliciano , Vincent K Lam , David S Ettinger , Qing Kay Li , Peter B Illei , Kim Monkhorst , Robert B Scharpf , Julie R Brahmer , Victor E Velculescu , Ali H Zaidi , Patrick M Forde , Valsamo Anagnostou

Circulating tumor DNA guided adjuvant chemotherapy in stage II colon cancer (MEDOCC-CrEATE): study protocol for a trial within a cohort study.

BMC cancer

Avec: S J Schraa , K L van Rooijen , D E W van der Kruijssen , C Rubio Alarcón , J Phallen , M Sausen , J Simmons , V M H Coupé , W M U van Grevenstein , S Elias , H M Verkooijen , M M Laclé , L J W Bosch , D van den Broek , G A Meijer , V E Velculescu , R J A Fijneman , G R Vink , M Koopman , Auteur inconnu

Cell-Free DNA Fragmentomes in the Diagnostic Evaluation of Patients With Symptoms Suggestive of Lung Cancer.

Chest

Avec: Alessandro I C Leal , Dimitrios Mathios , Debbie Jakubowski , Jakob S Johansen , Anna Lau , Tony Wu , Stephen Cristiano , Jamie E Medina , Jillian Phallen , Daniel C Bruhm , Jacob Carey , Nicholas C Dracopoli , Stig E Bojesen , Robert B Scharpf , Victor E Velculescu , Anil Vachani , Peter B Bach

DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation.

Nature communications

Avec: Michaël Noë , Dimitrios Mathios , Akshaya V Annapragada , Shashikant Koul , Zacharia H Foda , Jamie E Medina , Stephen Cristiano , Christopher Cherry , Daniel C Bruhm , Noushin Niknafs , Vilmos Adleff , Leonardo Ferreira , Hari Easwaran , Stephen Baylin , Jillian Phallen , Robert B Scharpf , Victor E Velculescu

Early Noninvasive Detection of Response to Targeted Therapy in Non-Small Cell Lung Cancer.

Cancer research

Avec: Jillian Phallen , Alessandro Leal , Brian D Woodward , Patrick M Forde , Jarushka Naidoo , Kristen A Marrone , Julie R Brahmer , Jacob Fiksel , Jamie E Medina , Stephen Cristiano , Doreen N Palsgrove , Christopher D Gocke , Daniel C Bruhm , Parissa Keshavarzian , Vilmos Adleff , Elizabeth Weihe , Valsamo Anagnostou , Robert B Scharpf , Victor E Velculescu , Hatim Husain

Detection and characterization of lung cancer using cell-free DNA fragmentomes.

Nature communications

Avec: Dimitrios Mathios , Jakob Sidenius Johansen , Stephen Cristiano , Jamie E Medina , Jillian Phallen , Klaus R Larsen , Daniel C Bruhm , Noushin Niknafs , Leonardo Ferreira , Vilmos Adleff , Jia Yuee Chiao , Alessandro Leal , Michael Noe , James R White , Adith S Arun , Carolyn Hruban , Akshaya V Annapragada , Sarah Østrup Jensen , Mai-Britt Worm Ørntoft , Anders Husted Madsen , Beatriz Carvalho , Meike de Wit , Jacob Carey , Nicholas C Dracopoli , Tara Maddala , Kenneth C Fang , Anne-Renee Hartman , Patrick M Forde , Valsamo Anagnostou , Julie R Brahmer , Remond J A Fijneman , Hans Jørgen Nielsen , Gerrit A Meijer , Claus Lindbjerg Andersen , Anders Mellemgaard , Stig E Bojesen , Robert B Scharpf , Victor E Velculescu

Elucidating the heterogeneity of immunotherapy response and immune-related toxicities by longitudinal ctDNA and immune cell compartment tracking in lung cancer.

bioRxiv : the preprint server for biology

Avec: Joseph C Murray , Lavanya Sivapalan , Karlijn Hummelink , Archana Balan , James R White , Noushin Niknafs , Lamia Rhymee , Gavin Pereira , Nisha Rao , Jillian Phallen , Alessandro Leal , David L Bartlett , Kristen A Marrone , Jarushka Naidoo , Benjamin Levy , Samuel Rosner , Christine L Hann , Susan C Scott , Josephine Feliciano , Vincent K Lam , David S Ettinger , Qing Kay Li , Peter B Illei , Kim Monkhorst , Ali H Zaidi , Robert B Scharpf , Julie R Brahmer , Victor E Velculescu , Patrick M Forde , Valsamo Anagnostou

Genome-wide repeat landscapes in cancer and cell-free DNA.

Science translational medicine

Avec: Akshaya V Annapragada , Noushin Niknafs , James R White , Daniel C Bruhm , Christopher Cherry , Jamie E Medina , Vilmos Adleff , Carolyn Hruban , Dimitrios Mathios , Zachariah H Foda , Jillian Phallen , Robert B Scharpf , Victor E Velculescu

Genome-wide investigation of intragenic DNA methylation identifies ZMIZ1 gene as a prognostic marker in glioblastoma and multiple cancer types.

International journal of cancer

Avec: Dimitrios Mathios , Taeyoung Hwang , Yuanxuan Xia , Jillian Phallen , Yuan Rui , Alfred P See , Russell Maxwell , Zineb Belcaid , Joshua Casaos , Peter C Burger , Kerrie L McDonald , Gary L Gallia , Leslie Cope , Mihoko Kai , Henry Brem , Drew M Pardoll , Patrick Ha , Jordan J Green , Victor E Velculescu , Chetan Bettegowda , Chul-Kee Park , Michael Lim

White blood cell and cell-free DNA analyses for detection of residual disease in gastric cancer.

Nature communications

Avec: Alessandro Leal , Nicole C T van Grieken , Doreen N Palsgrove , Jillian Phallen , Jamie E Medina , Carolyn Hruban , Mark A M Broeckaert , Valsamo Anagnostou , Vilmos Adleff , Daniel C Bruhm , Jenna V Canzoniero , Jacob Fiksel , Marianne Nordsmark , Fabienne A R M Warmerdam , Henk M W Verheul , Dick Johan van Spronsen , Laurens V Beerepoot , Maud M Geenen , Johanneke E A Portielje , Edwin P M Jansen , Johanna van Sandick , Elma Meershoek-Klein Kranenbarg , Hanneke W M van Laarhoven , Donald L van der Peet , Cornelis J H van de Velde , Marcel Verheij , Remond Fijneman , Robert B Scharpf , Gerrit A Meijer , Annemieke Cats , Victor E Velculescu

Metastatic Colorectal Cancer Treatment Response Evaluation by Ultra-Deep Sequencing of Cell-Free DNA and Matched White Blood Cells.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Iris van 't Erve , Jamie E Medina , Alessandro Leal , Eniko Papp , Jillian Phallen , Vilmos Adleff , Elaine Jiayuee Chiao , Adith S Arun , Karen Bolhuis , John K Simmons , Aanavi Karandikar , Kenneth C Valkenburg , Mark Sausen , Samuel V Angiuoli , Robert B Scharpf , Cornelis J A Punt , Gerrit A Meijer , Victor E Velculescu , Remond J A Fijneman

Advances in molecular biomarkers and liquid biopsy in gliomas.

Neuro-oncology advances

Avec: Dimitrios Mathios , Jillian Phallen

Phase I Study of Rapid Alternation of Sunitinib and Regorafenib for the Treatment of Tyrosine Kinase Inhibitor Refractory Gastrointestinal Stromal Tumors.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: César Serrano , Alessandro Leal , Yanan Kuang , Jeffrey A Morgan , Constance M Barysauskas , Jillian Phallen , Olivia Triplett , Adrián Mariño-Enríquez , Andrew J Wagner , George D Demetri , Victor E Velculescu , Cloud P Paweletz , Jonathan A Fletcher , Suzanne George

Dynamics of Tumor and Immune Responses during Immune Checkpoint Blockade in Non-Small Cell Lung Cancer.

Cancer research

Avec: Valsamo Anagnostou , Patrick M Forde , James R White , Noushin Niknafs , Carolyn Hruban , Jarushka Naidoo , Kristen Marrone , I K Ashok Sivakumar , Daniel C Bruhm , Samuel Rosner , Jillian Phallen , Alessandro Leal , Vilmos Adleff , Kellie N Smith , Tricia R Cottrell , Lamia Rhymee , Doreen N Palsgrove , Christine L Hann , Benjamin Levy , Josephine Feliciano , Christos Georgiades , Franco Verde , Peter Illei , Qing Kay Li , Edward Gabrielson , Malcolm V Brock , James M Isbell , Jennifer L Sauter , Janis Taube , Robert B Scharpf , Rachel Karchin , Drew M Pardoll , Jamie E Chaft , Matthew D Hellmann , Julie R Brahmer , Victor E Velculescu

Genome-wide cell-free DNA fragmentation in patients with cancer.

Nature

Avec: Stephen Cristiano , Alessandro Leal , Jillian Phallen , Jacob Fiksel , Vilmos Adleff , Daniel C Bruhm , Sarah Østrup Jensen , Jamie E Medina , Carolyn Hruban , James R White , Doreen N Palsgrove , Noushin Niknafs , Valsamo Anagnostou , Patrick Forde , Jarushka Naidoo , Kristen Marrone , Julie Brahmer , Brian D Woodward , Hatim Husain , Karlijn L van Rooijen , Mai-Britt Worm Ørntoft , Anders Husted Madsen , Cornelis J H van de Velde , Marcel Verheij , Annemieke Cats , Cornelis J A Punt , Geraldine R Vink , Nicole C T van Grieken , Miriam Koopman , Remond J A Fijneman , Julia S Johansen , Hans Jørgen Nielsen , Gerrit A Meijer , Claus Lindbjerg Andersen , Robert B Scharpf , Victor E Velculescu

Single-molecule genome-wide mutation profiles of cell-free DNA for non-invasive detection of cancer.

Nature genetics

Avec: Daniel C Bruhm , Dimitrios Mathios , Zachariah H Foda , Akshaya V Annapragada , Jamie E Medina , Vilmos Adleff , Elaine Jiayuee Chiao , Leonardo Ferreira , Stephen Cristiano , James R White , Sarah A Mazzilli , Ehab Billatos , Avrum Spira , Ali H Zaidi , Jeffrey Mueller , Amy K Kim , Valsamo Anagnostou , Jillian Phallen , Robert B Scharpf , Victor E Velculescu

Detecting Liver Cancer Using Cell-Free DNA Fragmentomes.

Cancer discovery

Avec: Zachariah H Foda , Akshaya V Annapragada , Kavya Boyapati , Daniel C Bruhm , Nicholas A Vulpescu , Jamie E Medina , Dimitrios Mathios , Stephen Cristiano , Noushin Niknafs , Harry T Luu , Michael G Goggins , Robert A Anders , Jing Sun , Shruti H Meta , David L Thomas , Gregory D Kirk , Vilmos Adleff , Jillian Phallen , Robert B Scharpf , Amy K Kim , Victor E Velculescu

Early evaluation of the effectiveness and cost-effectiveness of ctDNA-guided selection for adjuvant chemotherapy in stage II colon cancer.

Therapeutic advances in medical oncology

Avec: Astrid Kramer , Marjolein J E Greuter , Suzanna J Schraa , Geraldine R Vink , Jillian Phallen , Victor E Velculescu , Gerrit A Meijer , Daan van den Broek , Miriam Koopman , Jeanine M L Roodhart , Remond J A Fijneman , Valesca P Retèl , Veerle M H Coupé

Early detection of ovarian cancer using cell-free DNA fragmentomes and protein biomarkers.

Cancer discovery

Avec: Jamie E Medina , Akshaya V Annapragada , Pien Lof , Sarah Short , Adrianna L Bartolomucci , Dimitrios Mathios , Shashikant Koul , Noushin Niknafs , Michael Noe , Zachariah H Foda , Daniel C Bruhm , Carolyn Hruban , Nicholas A Vulpescu , Euihye Jung , Renu Dua , Jenna V Canzoniero , Stephen Cristiano , Vilmos Adleff , Heather Symecko , Daan van den Broek , Lori J Sokoll , Stephen B Baylin , Michael F Press , Dennis J Slamon , Gottfried E Konecny , Christina Therkildsen , Beatriz Carvalho , Gerrit A Meijer , Claus Lindbjerg Andersen , Susan M Domchek , Ronny Drapkin , Robert B Scharpf , Jillian Phallen , Christine A R Lok , Victor E Velculescu

Réseau de co-auteurs

Victor E Velculescu 17 collaborations

Robert B Scharpf 14 collaborations

Jamie E Medina 11 collaborations

Daniel C Bruhm 11 collaborations

Vilmos Adleff 11 collaborations

Noushin Niknafs 9 collaborations

Alessandro Leal 9 collaborations

Dimitrios Mathios 9 collaborations

Valsamo Anagnostou 8 collaborations

Stephen Cristiano 8 collaborations

James R White 7 collaborations

Akshaya V Annapragada 6 collaborations

Carolyn Hruban 6 collaborations

Gerrit A Meijer 6 collaborations

Jarushka Naidoo 5 collaborations

Julie R Brahmer 5 collaborations

Patrick M Forde 5 collaborations

Doreen N Palsgrove 4 collaborations

Remond J A Fijneman 4 collaborations

Zachariah H Foda 4 collaborations

Lamia Rhymee 3 collaborations

Kristen A Marrone 3 collaborations

Benjamin Levy 3 collaborations

Samuel Rosner 3 collaborations

Christine L Hann 3 collaborations

Josephine Feliciano 3 collaborations

Qing Kay Li 3 collaborations

Ali H Zaidi 3 collaborations

Leonardo Ferreira 3 collaborations

Jacob Fiksel 3 collaborations

Claus Lindbjerg Andersen 3 collaborations

Joseph C Murray 2 collaborations

Lavanya Sivapalan 2 collaborations

Karlijn Hummelink 2 collaborations

Archana Balan 2 collaborations

Gavin Pereira 2 collaborations

Nisha Rao 2 collaborations

David L Bartlett 2 collaborations

Susan C Scott 2 collaborations

Vincent K Lam 2 collaborations

David S Ettinger 2 collaborations

Peter B Illei 2 collaborations

Kim Monkhorst 2 collaborations

Jacob Carey 2 collaborations

Nicholas C Dracopoli 2 collaborations

Stig E Bojesen 2 collaborations

Shashikant Koul 2 collaborations

Christopher Cherry 2 collaborations

Brian D Woodward 2 collaborations

Hatim Husain 2 collaborations

Michael Noe 2 collaborations

Adith S Arun 2 collaborations

Sarah Østrup Jensen 2 collaborations

Mai-Britt Worm Ørntoft 2 collaborations

Anders Husted Madsen 2 collaborations

Beatriz Carvalho 2 collaborations

Hans Jørgen Nielsen 2 collaborations

Drew M Pardoll 2 collaborations

Nicole C T van Grieken 2 collaborations

Jenna V Canzoniero 2 collaborations

Cornelis J H van de Velde 2 collaborations

Marcel Verheij 2 collaborations

Annemieke Cats 2 collaborations

Elaine Jiayuee Chiao 2 collaborations

Cornelis J A Punt 2 collaborations

Kristen Marrone 2 collaborations

Geraldine R Vink 2 collaborations

Miriam Koopman 2 collaborations

Amy K Kim 2 collaborations

Nicholas A Vulpescu 2 collaborations

Daan van den Broek 2 collaborations

Benny Weksler 1 collaboration

Nathan Bahary 1 collaboration

Akul Goel 1 collaboration

S J Schraa 1 collaboration

K L van Rooijen 1 collaboration

D E W van der Kruijssen 1 collaboration

C Rubio Alarcón 1 collaboration

J Phallen 1 collaboration

M Sausen 1 collaboration

J Simmons 1 collaboration

V M H Coupé 1 collaboration

W M U van Grevenstein 1 collaboration

S Elias 1 collaboration

H M Verkooijen 1 collaboration

M M Laclé 1 collaboration

L J W Bosch 1 collaboration

D van den Broek 1 collaboration

G A Meijer 1 collaboration

V E Velculescu 1 collaboration

R J A Fijneman 1 collaboration

G R Vink 1 collaboration

M Koopman 1 collaboration

None None 1 collaboration

Alessandro I C Leal 1 collaboration

Debbie Jakubowski 1 collaboration

Jakob S Johansen 1 collaboration

Anna Lau 1 collaboration

Tony Wu 1 collaboration

Anil Vachani 1 collaboration

Peter B Bach 1 collaboration

Michaël Noë 1 collaboration

Zacharia H Foda 1 collaboration

Hari Easwaran 1 collaboration

Stephen Baylin 1 collaboration

Christopher D Gocke 1 collaboration

Parissa Keshavarzian 1 collaboration

Elizabeth Weihe 1 collaboration

Jakob Sidenius Johansen 1 collaboration

Klaus R Larsen 1 collaboration

Jia Yuee Chiao 1 collaboration

Meike de Wit 1 collaboration

Tara Maddala 1 collaboration

Kenneth C Fang 1 collaboration

Anne-Renee Hartman 1 collaboration

Anders Mellemgaard 1 collaboration

Taeyoung Hwang 1 collaboration

Yuanxuan Xia 1 collaboration

Yuan Rui 1 collaboration

Alfred P See 1 collaboration

Russell Maxwell 1 collaboration

Zineb Belcaid 1 collaboration

Joshua Casaos 1 collaboration

Peter C Burger 1 collaboration

Kerrie L McDonald 1 collaboration

Gary L Gallia 1 collaboration

Leslie Cope 1 collaboration

Mihoko Kai 1 collaboration

Henry Brem 1 collaboration

Patrick Ha 1 collaboration

Jordan J Green 1 collaboration

Chetan Bettegowda 1 collaboration

Chul-Kee Park 1 collaboration

Michael Lim 1 collaboration

Mark A M Broeckaert 1 collaboration

Marianne Nordsmark 1 collaboration

Fabienne A R M Warmerdam 1 collaboration

Henk M W Verheul 1 collaboration

Dick Johan van Spronsen 1 collaboration

Laurens V Beerepoot 1 collaboration

Maud M Geenen 1 collaboration

Johanneke E A Portielje 1 collaboration

Edwin P M Jansen 1 collaboration

Johanna van Sandick 1 collaboration

Elma Meershoek-Klein Kranenbarg 1 collaboration

Hanneke W M van Laarhoven 1 collaboration

Donald L van der Peet 1 collaboration

Remond Fijneman 1 collaboration

Iris van 't Erve 1 collaboration

Eniko Papp 1 collaboration

Karen Bolhuis 1 collaboration

John K Simmons 1 collaboration

Aanavi Karandikar 1 collaboration

Kenneth C Valkenburg 1 collaboration

Mark Sausen 1 collaboration

Samuel V Angiuoli 1 collaboration

César Serrano 1 collaboration

Yanan Kuang 1 collaboration

Jeffrey A Morgan 1 collaboration

Constance M Barysauskas 1 collaboration

Olivia Triplett 1 collaboration

Adrián Mariño-Enríquez 1 collaboration

Andrew J Wagner 1 collaboration

George D Demetri 1 collaboration

Cloud P Paweletz 1 collaboration

Jonathan A Fletcher 1 collaboration

Suzanne George 1 collaboration

I K Ashok Sivakumar 1 collaboration

Kellie N Smith 1 collaboration

Tricia R Cottrell 1 collaboration

Christos Georgiades 1 collaboration

Franco Verde 1 collaboration

Peter Illei 1 collaboration

Edward Gabrielson 1 collaboration

Malcolm V Brock 1 collaboration

James M Isbell 1 collaboration

Jennifer L Sauter 1 collaboration

Janis Taube 1 collaboration

Rachel Karchin 1 collaboration

Jamie E Chaft 1 collaboration

Matthew D Hellmann 1 collaboration

Patrick Forde 1 collaboration

Julie Brahmer 1 collaboration

Karlijn L van Rooijen 1 collaboration

Julia S Johansen 1 collaboration

Sarah A Mazzilli 1 collaboration

Ehab Billatos 1 collaboration

Avrum Spira 1 collaboration

Jeffrey Mueller 1 collaboration

Kavya Boyapati 1 collaboration

Harry T Luu 1 collaboration

Michael G Goggins 1 collaboration

Robert A Anders 1 collaboration

Jing Sun 1 collaboration

Shruti H Meta 1 collaboration

David L Thomas 1 collaboration

Gregory D Kirk 1 collaboration

Astrid Kramer 1 collaboration

Marjolein J E Greuter 1 collaboration

Suzanna J Schraa 1 collaboration

Jeanine M L Roodhart 1 collaboration

Valesca P Retèl 1 collaboration

Veerle M H Coupé 1 collaboration

Pien Lof 1 collaboration

Sarah Short 1 collaboration

Adrianna L Bartolomucci 1 collaboration

Euihye Jung 1 collaboration

Renu Dua 1 collaboration

Heather Symecko 1 collaboration

Lori J Sokoll 1 collaboration

Stephen B Baylin 1 collaboration

Michael F Press 1 collaboration

Dennis J Slamon 1 collaboration

Gottfried E Konecny 1 collaboration

Christina Therkildsen 1 collaboration

Susan M Domchek 1 collaboration

Ronny Drapkin 1 collaboration

Christine A R Lok 1 collaboration