Jacob Fiksel

Affiliations

The Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.

Publications (18)

Genome-wide cell-free DNA fragmentation in patients with cancer.

Nature

Avec: Stephen Cristiano , Alessandro Leal , Jillian Phallen , Vilmos Adleff , Daniel C Bruhm , Sarah Østrup Jensen , Jamie E Medina , Carolyn Hruban , James R White , Doreen N Palsgrove , Noushin Niknafs , Valsamo Anagnostou , Patrick Forde , Jarushka Naidoo , Kristen Marrone , Julie Brahmer , Brian D Woodward , Hatim Husain , Karlijn L van Rooijen , Mai-Britt Worm Ørntoft , Anders Husted Madsen , Cornelis J H van de Velde , Marcel Verheij , Annemieke Cats , Cornelis J A Punt , Geraldine R Vink , Nicole C T van Grieken , Miriam Koopman , Remond J A Fijneman , Julia S Johansen , Hans Jørgen Nielsen , Gerrit A Meijer , Claus Lindbjerg Andersen , Robert B Scharpf , Victor E Velculescu

Frequency of Complicated Symptomatic Bone Metastasis Over a Breadth of Operational Definitions.

International journal of radiation oncology, biology, physics

Avec: Sara R Alcorn , Christen R Elledge , Jean L Wright , Thomas J Smith , Todd R McNutt , Scott L Zeger , Theodore L DeWeese

Evaluation of the Clinical Utility of the Bone Metastases Ensemble Trees for Survival Decision Support Platform (BMETS-DSP): A Case-Based Pilot Assessment.

JCO clinical cancer informatics

Avec: Sara R Alcorn , Anna W LaVigne , Christen R Elledge , Chen Hu , Lawrence Kleinberg , Adam Levin , Thomas Smith , Zhi Cheng , Kibem Kim , Avani D Rao , Lindsey Sloan , Brandi Page , Susan F Stinson , K Ranh Voong , Todd R McNutt , Michael R Bowers , Theodore L DeWeese , Scott Zeger , Jean L Wright

Patient Trajectories Among Persons Hospitalized for COVID-19 : A Cohort Study.

Annals of internal medicine

Avec: Brian T Garibaldi , John Muschelli , Matthew L Robinson , Masoud Rouhizadeh , Jamie Perin , Grant Schumock , Paul Nagy , Josh H Gray , Harsha Malapati , Mariam Ghobadi-Krueger , Timothy M Niessen , Bo Soo Kim , Peter M Hill , M Shafeeq Ahmed , Eric D Dobkin , Renee Blanding , Jennifer Abele , Bonnie Woods , Kenneth Harkness , David R Thiemann , Mary G Bowring , Aalok B Shah , Mei-Cheng Wang , Karen Bandeen-Roche , Antony Rosen , Scott L Zeger , Amita Gupta

Genomic Landscapes and Hallmarks of Mutant RAS in Human Cancers.

Cancer research

Avec: Robert B Scharpf , Archana Balan , Biagio Ricciuti , Christopher Cherry , Chenguang Wang , Michele L Lenoue-Newton , Hira A Rizvi , James R White , Alexander S Baras , Jordan Anaya , Blair V Landon , Marta Majcherska-Agrawal , Paola Ghanem , Jocelyn Lee , Leon Raskin , Andrew S Park , Huakang Tu , Hil Hsu , Kathryn C Arbour , Mark M Awad , Gregory J Riely , Christine M Lovly , Valsamo Anagnostou

Early Noninvasive Detection of Response to Targeted Therapy in Non-Small Cell Lung Cancer.

Cancer research

Avec: Jillian Phallen , Alessandro Leal , Brian D Woodward , Patrick M Forde , Jarushka Naidoo , Kristen A Marrone , Julie R Brahmer , Jamie E Medina , Stephen Cristiano , Doreen N Palsgrove , Christopher D Gocke , Daniel C Bruhm , Parissa Keshavarzian , Vilmos Adleff , Elizabeth Weihe , Valsamo Anagnostou , Robert B Scharpf , Victor E Velculescu , Hatim Husain

External Validation of the Bone Metastases Ensemble Trees for Survival (BMETS) Machine Learning Model to Predict Survival in Patients With Symptomatic Bone Metastases.

JCO clinical cancer informatics

Avec: Christen R Elledge , Anna W LaVigne , Jean L Wright , Todd McNutt , Lawrence R Kleinberg , Chen Hu , Thomas J Smith , Scott Zeger , Theodore L DeWeese , Sara R Alcorn

Developing an Improved Statistical Approach for Survival Estimation in Bone Metastases Management: The Bone Metastases Ensemble Trees for Survival (BMETS) Model.

International journal of radiation oncology, biology, physics

Avec: Sara R Alcorn , Jean L Wright , Christen R Elledge , Thomas J Smith , Powell Perng , Sarah Saleemi , Todd R McNutt , Theodore L DeWeese , Scott Zeger

Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates.

The American journal of tropical medicine and hygiene

Avec: Brian Gilbert , Emily Wilson , Henry Kalter , Almamy Kante , Aveika Akum , Dianna Blau , Quique Bassat , Ivalda Macicame , Eduardo Samo Gudo , Robert Black , Scott Zeger , Agbessi Amouzou , Abhirup Datta

Steps toward a resilient circular economy in India.

Clean technologies and environmental policy

Avec: Joseph Fiksel , Praveena Sanjay , Kavya Raman

A transformation-free linear regression for compositional outcomes and predictors.

Biometrics

Avec: Scott Zeger , Abhirup Datta

White blood cell and cell-free DNA analyses for detection of residual disease in gastric cancer.

Nature communications

Avec: Alessandro Leal , Nicole C T van Grieken , Doreen N Palsgrove , Jillian Phallen , Jamie E Medina , Carolyn Hruban , Mark A M Broeckaert , Valsamo Anagnostou , Vilmos Adleff , Daniel C Bruhm , Jenna V Canzoniero , Marianne Nordsmark , Fabienne A R M Warmerdam , Henk M W Verheul , Dick Johan van Spronsen , Laurens V Beerepoot , Maud M Geenen , Johanneke E A Portielje , Edwin P M Jansen , Johanna van Sandick , Elma Meershoek-Klein Kranenbarg , Hanneke W M van Laarhoven , Donald L van der Peet , Cornelis J H van de Velde , Marcel Verheij , Remond Fijneman , Robert B Scharpf , Gerrit A Meijer , Annemieke Cats , Victor E Velculescu

Differences in visual field loss pattern when transitioning from SITA standard to SITA faster.

Scientific reports

Avec: Christopher T Le , Pradeep Ramulu , Jithin Yohannan

Regularized Bayesian transfer learning for population-level etiological distributions.

Biostatistics (Oxford, England)

Avec: Abhirup Datta , Agbessi Amouzou , Scott L Zeger

Improving providers' survival estimates and selection of prognosis- and guidelines-appropriate treatment for patients with symptomatic bone metastases: Development of the Bone Metastases Ensemble Trees for Survival Decision Support Platform.

Journal of evaluation in clinical practice

Avec: Sara R Alcorn , Christen R Elledge , Anna W LaVigne , Lawrence Kleinberg , Thomas J Smith , Adam S Levin , Scott Zeger , Todd McNutt , Theodore L DeWeese , Jean L Wright

Multi-Cause Calibration of Verbal Autopsy-Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique.

The American journal of tropical medicine and hygiene

Large-scale identification of undiagnosed hepatic steatosis using natural language processing.

EClinicalMedicine

Avec: Carolin V Schneider , Tang Li , David Zhang , Anya I Mezina , Puru Rattan , Helen Huang , Kate Townsend Creasy , Eleonora Scorletti , Inuk Zandvakili , Marijana Vujkovic , Leonida Hehl , Joseph Park , Kirk Wangensteen , Marjorie Risman , Kyong-Mi Chang , Marina Serper , Rotonya M Carr , Kai Markus Schneider , Jinbo Chen , Daniel J Rader

On exact randomization-based covariate-adjusted confidence intervals.

Biometrics

Avec:

Réseau de co-auteurs

Scott Zeger 7 collaborations

Sara R Alcorn 5 collaborations

Christen R Elledge 5 collaborations

Jean L Wright 5 collaborations

Theodore L DeWeese 5 collaborations

Valsamo Anagnostou 4 collaborations

Robert B Scharpf 4 collaborations

Thomas J Smith 4 collaborations

Abhirup Datta 4 collaborations

Alessandro Leal 3 collaborations

Jillian Phallen 3 collaborations

Vilmos Adleff 3 collaborations

Daniel C Bruhm 3 collaborations

Jamie E Medina 3 collaborations

Doreen N Palsgrove 3 collaborations

Victor E Velculescu 3 collaborations

Todd R McNutt 3 collaborations

Scott L Zeger 3 collaborations

Anna W LaVigne 3 collaborations

Agbessi Amouzou 3 collaborations

Stephen Cristiano 2 collaborations

Carolyn Hruban 2 collaborations

James R White 2 collaborations

Jarushka Naidoo 2 collaborations

Brian D Woodward 2 collaborations

Hatim Husain 2 collaborations

Cornelis J H van de Velde 2 collaborations

Marcel Verheij 2 collaborations

Annemieke Cats 2 collaborations

Nicole C T van Grieken 2 collaborations

Gerrit A Meijer 2 collaborations

Chen Hu 2 collaborations

Lawrence Kleinberg 2 collaborations

Todd McNutt 2 collaborations

Brian Gilbert 2 collaborations

Emily Wilson 2 collaborations

Henry Kalter 2 collaborations

Almamy Kante 2 collaborations

Aveika Akum 2 collaborations

Dianna Blau 2 collaborations

Quique Bassat 2 collaborations

Ivalda Macicame 2 collaborations

Eduardo Samo Gudo 2 collaborations

Robert Black 2 collaborations

Sarah Østrup Jensen 1 collaboration

Noushin Niknafs 1 collaboration

Patrick Forde 1 collaboration

Kristen Marrone 1 collaboration

Julie Brahmer 1 collaboration

Karlijn L van Rooijen 1 collaboration

Mai-Britt Worm Ørntoft 1 collaboration

Anders Husted Madsen 1 collaboration

Cornelis J A Punt 1 collaboration

Geraldine R Vink 1 collaboration

Miriam Koopman 1 collaboration

Remond J A Fijneman 1 collaboration

Julia S Johansen 1 collaboration

Hans Jørgen Nielsen 1 collaboration

Claus Lindbjerg Andersen 1 collaboration

Adam Levin 1 collaboration

Thomas Smith 1 collaboration

Zhi Cheng 1 collaboration

Kibem Kim 1 collaboration

Avani D Rao 1 collaboration

Lindsey Sloan 1 collaboration

Brandi Page 1 collaboration

Susan F Stinson 1 collaboration

K Ranh Voong 1 collaboration

Michael R Bowers 1 collaboration

Brian T Garibaldi 1 collaboration

John Muschelli 1 collaboration

Matthew L Robinson 1 collaboration

Masoud Rouhizadeh 1 collaboration

Jamie Perin 1 collaboration

Grant Schumock 1 collaboration

Paul Nagy 1 collaboration

Josh H Gray 1 collaboration

Harsha Malapati 1 collaboration

Mariam Ghobadi-Krueger 1 collaboration

Timothy M Niessen 1 collaboration

Bo Soo Kim 1 collaboration

Peter M Hill 1 collaboration

M Shafeeq Ahmed 1 collaboration

Eric D Dobkin 1 collaboration

Renee Blanding 1 collaboration

Jennifer Abele 1 collaboration

Bonnie Woods 1 collaboration

Kenneth Harkness 1 collaboration

David R Thiemann 1 collaboration

Mary G Bowring 1 collaboration

Aalok B Shah 1 collaboration

Mei-Cheng Wang 1 collaboration

Karen Bandeen-Roche 1 collaboration

Antony Rosen 1 collaboration

Amita Gupta 1 collaboration

Archana Balan 1 collaboration

Biagio Ricciuti 1 collaboration

Christopher Cherry 1 collaboration

Chenguang Wang 1 collaboration

Michele L Lenoue-Newton 1 collaboration

Hira A Rizvi 1 collaboration

Alexander S Baras 1 collaboration

Jordan Anaya 1 collaboration

Blair V Landon 1 collaboration

Marta Majcherska-Agrawal 1 collaboration

Paola Ghanem 1 collaboration

Jocelyn Lee 1 collaboration

Leon Raskin 1 collaboration

Andrew S Park 1 collaboration

Huakang Tu 1 collaboration

Hil Hsu 1 collaboration

Kathryn C Arbour 1 collaboration

Mark M Awad 1 collaboration

Gregory J Riely 1 collaboration

Christine M Lovly 1 collaboration

Patrick M Forde 1 collaboration

Kristen A Marrone 1 collaboration

Julie R Brahmer 1 collaboration

Christopher D Gocke 1 collaboration

Parissa Keshavarzian 1 collaboration

Elizabeth Weihe 1 collaboration

Lawrence R Kleinberg 1 collaboration

Powell Perng 1 collaboration

Sarah Saleemi 1 collaboration

Joseph Fiksel 1 collaboration

Praveena Sanjay 1 collaboration

Kavya Raman 1 collaboration

Mark A M Broeckaert 1 collaboration

Jenna V Canzoniero 1 collaboration

Marianne Nordsmark 1 collaboration

Fabienne A R M Warmerdam 1 collaboration

Henk M W Verheul 1 collaboration

Dick Johan van Spronsen 1 collaboration

Laurens V Beerepoot 1 collaboration

Maud M Geenen 1 collaboration

Johanneke E A Portielje 1 collaboration

Edwin P M Jansen 1 collaboration

Johanna van Sandick 1 collaboration

Elma Meershoek-Klein Kranenbarg 1 collaboration

Hanneke W M van Laarhoven 1 collaboration

Donald L van der Peet 1 collaboration

Remond Fijneman 1 collaboration

Christopher T Le 1 collaboration

Pradeep Ramulu 1 collaboration

Jithin Yohannan 1 collaboration

Adam S Levin 1 collaboration

Carolin V Schneider 1 collaboration

Tang Li 1 collaboration

David Zhang 1 collaboration

Anya I Mezina 1 collaboration

Puru Rattan 1 collaboration

Helen Huang 1 collaboration

Kate Townsend Creasy 1 collaboration

Eleonora Scorletti 1 collaboration

Inuk Zandvakili 1 collaboration

Marijana Vujkovic 1 collaboration

Leonida Hehl 1 collaboration

Joseph Park 1 collaboration

Kirk Wangensteen 1 collaboration

Marjorie Risman 1 collaboration

Kyong-Mi Chang 1 collaboration

Marina Serper 1 collaboration

Rotonya M Carr 1 collaboration

Kai Markus Schneider 1 collaboration

Jinbo Chen 1 collaboration

Daniel J Rader 1 collaboration