Benjamin A Barad

Affiliations

Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA.
Department of Integrative Structural and Computational Biology, Scripps Research, San Diego, CA, USA.

ORCID: http://orcid.org/0000-0002-1016-862X

Publications (9)

Nanoscale details of mitochondrial constriction revealed by cryoelectron tomography.

Biophysical journal

Avec: Shrawan Kumar Mageswaran , Danielle Ann Grotjahn , Xiangrui Zeng , Benjamin Asher Barad , Michaela Medina , My Hanh Hoang , Megan J Dobro , Yi-Wei Chang , Min Xu , Wei Yuan Yang , Grant J Jensen

Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.

Nature chemistry

Avec: Alexander M Wolff , Eriko Nango , Iris D Young , Aaron S Brewster , Minoru Kubo , Takashi Nomura , Michihiro Sugahara , Shigeki Owada , Benjamin A Barad , Kazutaka Ito , Asmit Bhowmick , Sergio Carbajo , Tomoya Hino , James M Holton , Dohyun Im , Lee J O'Riordan , Tomoyuki Tanaka , Rie Tanaka , Raymond G Sierra , Fumiaki Yumoto , Kensuke Tono , So Iwata , Nicholas K Sauter , James S Fraser , Michael C Thompson

Overcoming resolution attenuation during tilted cryo-EM data collection.

Nature communications

Avec: Sriram Aiyer , Philip R Baldwin , Shi Min Tan , Zelin Shan , Juntaek Oh , Atousa Mehrani , Marianne E Bowman , Gordon Louie , Dario Oliveira Passos , Selena Đorđević-Marquardt , Mario Mietzsch , Joshua A Hull , Shuichi Hoshika , Benjamin A Barad , Danielle A Grotjahn , Robert McKenna , Mavis Agbandje-McKenna , Steven A Benner , Joseph A P Noel , Dong Wang , Yong Zi Tan , Dmitry Lyumkis

Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates.

Protein science : a publication of the Protein Society

Avec: Benjamin A Barad , Lin Liu , Roberto E Diaz , Ralp Basilio , Steven J Van Dyken , Richard M Locksley , James S Fraser

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.

Nature methods

Avec: Catherine L Lawson , Andriy Kryshtafovych , Paul D Adams , Pavel V Afonine , Matthew L Baker , Benjamin A Barad , Paul Bond , Tom Burnley , Renzhi Cao , Jianlin Cheng , Grzegorz Chojnowski , Kevin Cowtan , Ken A Dill , Frank DiMaio , Daniel P Farrell , James S Fraser , Mark A Herzik , Soon Wen Hoh , Jie Hou , Li-Wei Hung , Maxim Igaev , Agnel P Joseph , Daisuke Kihara , Dilip Kumar , Sumit Mittal , Bohdan Monastyrskyy , Mateusz Olek , Colin M Palmer , Ardan Patwardhan , Alberto Perez , Jonas Pfab , Grigore D Pintilie , Jane S Richardson , Peter B Rosenthal , Daipayan Sarkar , Luisa U Schäfer , Michael F Schmid , Gunnar F Schröder , Mrinal Shekhar , Dong Si , Abishek Singharoy , Genki Terashi , Thomas C Terwilliger , Andrea Vaiana , Liguo Wang , Zhe Wang , Stephanie A Wankowicz , Christopher J Williams , Martyn Winn , Tianqi Wu , Xiaodi Yu , Kaiming Zhang , Helen M Berman , Wah Chiu

Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.

Cell reports

Avec: Nilanjana Chatterjee , Evangelos Pazarentzos , Manasi K Mayekar , Philippe Gui , David V Allegakoen , Gorjan Hrustanovic , Victor Olivas , Luping Lin , Erik Verschueren , Jeffrey R Johnson , Matan Hofree , Jenny J Yan , Billy W Newton , John V Dollen , Charles H Earnshaw , Jennifer Flanagan , Elton Chan , Saurabh Asthana , Trey Ideker , Wei Wu , Junji Suzuki , Benjamin A Barad , Yuriy Kirichok , James S Fraser , William A Weiss , Nevan J Krogan , Asmin Tulpule , Amit J Sabnis , Trever G Bivona

Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme.

Nature chemistry

Avec: Michael C Thompson , Benjamin A Barad , Alexander M Wolff , Hyun Sun Cho , Friedrich Schotte , Daniel M C Schwarz , Philip Anfinrud , James S Fraser

CellPAINT: Turnkey Illustration of Molecular Cell Biology.

Frontiers in bioinformatics

Avec: Adam Gardner , Ludovic Autin , Daniel Fuentes , Martina Maritan , Benjamin A Barad , Michaela Medina , Arthur J Olson , Danielle A Grotjahn , David S Goodsell

Overcoming Resolution Attenuation During Tilted Cryo-EM Data Collection.

bioRxiv : the preprint server for biology

Avec: Sriram Aiyer , Philip R Baldwin , Shi Min Tan , Zelin Shan , Juntaek Oh , Atousa Mehrani , Marianne E Bowman , Gordon Louie , Dario Oliveira Passos , Selena Đorđević-Marquardt , Mario Mietzsch , Joshua A Hull , Shuichi Hoshika , Benjamin A Barad , Danielle A Grotjahn , Robert McKenna , Mavis Agbandje-McKenna , Steven A Benner , Joseph A P Noel , Dong Wang , Yong Zi Tan , Dmitry Lyumkis

Réseau de co-auteurs

James S Fraser 5 collaborations

Danielle A Grotjahn 3 collaborations

Michaela Medina 2 collaborations

Alexander M Wolff 2 collaborations

Michael C Thompson 2 collaborations

Sriram Aiyer 2 collaborations

Philip R Baldwin 2 collaborations

Shi Min Tan 2 collaborations

Zelin Shan 2 collaborations

Juntaek Oh 2 collaborations

Atousa Mehrani 2 collaborations

Marianne E Bowman 2 collaborations

Gordon Louie 2 collaborations

Dario Oliveira Passos 2 collaborations

Selena Đorđević-Marquardt 2 collaborations

Mario Mietzsch 2 collaborations

Joshua A Hull 2 collaborations

Shuichi Hoshika 2 collaborations

Robert McKenna 2 collaborations

Mavis Agbandje-McKenna 2 collaborations

Steven A Benner 2 collaborations

Joseph A P Noel 2 collaborations

Dong Wang 2 collaborations

Yong Zi Tan 2 collaborations

Dmitry Lyumkis 2 collaborations

Shrawan Kumar Mageswaran 1 collaboration

Danielle Ann Grotjahn 1 collaboration

Xiangrui Zeng 1 collaboration

Benjamin Asher Barad 1 collaboration

My Hanh Hoang 1 collaboration

Megan J Dobro 1 collaboration

Yi-Wei Chang 1 collaboration

Min Xu 1 collaboration

Wei Yuan Yang 1 collaboration

Grant J Jensen 1 collaboration

Eriko Nango 1 collaboration

Iris D Young 1 collaboration

Aaron S Brewster 1 collaboration

Minoru Kubo 1 collaboration

Takashi Nomura 1 collaboration

Michihiro Sugahara 1 collaboration

Shigeki Owada 1 collaboration

Kazutaka Ito 1 collaboration

Asmit Bhowmick 1 collaboration

Sergio Carbajo 1 collaboration

Tomoya Hino 1 collaboration

James M Holton 1 collaboration

Dohyun Im 1 collaboration

Lee J O'Riordan 1 collaboration

Tomoyuki Tanaka 1 collaboration

Rie Tanaka 1 collaboration

Raymond G Sierra 1 collaboration

Fumiaki Yumoto 1 collaboration

Kensuke Tono 1 collaboration

So Iwata 1 collaboration

Nicholas K Sauter 1 collaboration

Lin Liu 1 collaboration

Roberto E Diaz 1 collaboration

Ralp Basilio 1 collaboration

Steven J Van Dyken 1 collaboration

Richard M Locksley 1 collaboration

Catherine L Lawson 1 collaboration

Andriy Kryshtafovych 1 collaboration

Paul D Adams 1 collaboration

Pavel V Afonine 1 collaboration

Matthew L Baker 1 collaboration

Paul Bond 1 collaboration

Tom Burnley 1 collaboration

Renzhi Cao 1 collaboration

Jianlin Cheng 1 collaboration

Grzegorz Chojnowski 1 collaboration

Kevin Cowtan 1 collaboration

Ken A Dill 1 collaboration

Frank DiMaio 1 collaboration

Daniel P Farrell 1 collaboration

Mark A Herzik 1 collaboration

Soon Wen Hoh 1 collaboration

Jie Hou 1 collaboration

Li-Wei Hung 1 collaboration

Maxim Igaev 1 collaboration

Agnel P Joseph 1 collaboration

Daisuke Kihara 1 collaboration

Dilip Kumar 1 collaboration

Sumit Mittal 1 collaboration

Bohdan Monastyrskyy 1 collaboration

Mateusz Olek 1 collaboration

Colin M Palmer 1 collaboration

Ardan Patwardhan 1 collaboration

Alberto Perez 1 collaboration

Jonas Pfab 1 collaboration

Grigore D Pintilie 1 collaboration

Jane S Richardson 1 collaboration

Peter B Rosenthal 1 collaboration

Daipayan Sarkar 1 collaboration

Luisa U Schäfer 1 collaboration

Michael F Schmid 1 collaboration

Gunnar F Schröder 1 collaboration

Mrinal Shekhar 1 collaboration

Dong Si 1 collaboration

Abishek Singharoy 1 collaboration

Genki Terashi 1 collaboration

Thomas C Terwilliger 1 collaboration

Andrea Vaiana 1 collaboration

Liguo Wang 1 collaboration

Zhe Wang 1 collaboration

Stephanie A Wankowicz 1 collaboration

Christopher J Williams 1 collaboration

Martyn Winn 1 collaboration

Tianqi Wu 1 collaboration

Xiaodi Yu 1 collaboration

Kaiming Zhang 1 collaboration

Helen M Berman 1 collaboration

Wah Chiu 1 collaboration

Nilanjana Chatterjee 1 collaboration

Evangelos Pazarentzos 1 collaboration

Manasi K Mayekar 1 collaboration

Philippe Gui 1 collaboration

David V Allegakoen 1 collaboration

Gorjan Hrustanovic 1 collaboration

Victor Olivas 1 collaboration

Luping Lin 1 collaboration

Erik Verschueren 1 collaboration

Jeffrey R Johnson 1 collaboration

Matan Hofree 1 collaboration

Jenny J Yan 1 collaboration

Billy W Newton 1 collaboration

John V Dollen 1 collaboration

Charles H Earnshaw 1 collaboration

Jennifer Flanagan 1 collaboration

Elton Chan 1 collaboration

Saurabh Asthana 1 collaboration

Trey Ideker 1 collaboration

Wei Wu 1 collaboration

Junji Suzuki 1 collaboration

Yuriy Kirichok 1 collaboration

William A Weiss 1 collaboration

Nevan J Krogan 1 collaboration

Asmin Tulpule 1 collaboration

Amit J Sabnis 1 collaboration

Trever G Bivona 1 collaboration

Hyun Sun Cho 1 collaboration

Friedrich Schotte 1 collaboration

Daniel M C Schwarz 1 collaboration

Philip Anfinrud 1 collaboration

Adam Gardner 1 collaboration

Ludovic Autin 1 collaboration

Daniel Fuentes 1 collaboration

Martina Maritan 1 collaboration

Arthur J Olson 1 collaboration

David S Goodsell 1 collaboration