Accueil
Tom Burnley
Tom Burnley
Affiliations
Scientific Computing Department, Science and Technology Facilities Council, Research Complex at Harwell, Didcot OX11 0FA, United Kingdom.
Publications (12)
Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps.
Journal of chemical information and modeling
Avec:
Agnel Praveen Joseph
,
Ingvar Lagerstedt
,
Arjen Jakobi
,
Ardan Patwardhan
,
Maya Topf
,
Martyn Winn
MRC2020: improvements to Ximdisp and the MRC image-processing programs.
IUCrJ
Avec:
J M Short
,
C M Palmer
,
T Burnley
,
M D Winn
,
Q Zhang
,
B V Venkataram Prasad
,
S Chen
,
R A Crowther
,
P N T Unwin
,
R Henderson
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action.
The international journal of high performance computing applications
Avec:
Anda Trifan
,
Defne Gorgun
,
Michael Salim
,
Zongyi Li
,
Alexander Brace
,
Maxim Zvyagin
,
Heng Ma
,
Austin Clyde
,
David Clark
,
David J Hardy
,
Lei Huang
,
John McCalpin
,
Murali Emani
,
Hyenseung Yoo
,
Junqi Yin
,
Aristeidis Tsaris
,
Vishal Subbiah
,
Tanveer Raza
,
Jessica Liu
,
Noah Trebesch
,
Geoffrey Wells
,
Venkatesh Mysore
,
Thomas Gibbs
,
James Phillips
,
S Chakra Chennubhotla
,
Ian Foster
,
Rick Stevens
,
Anima Anandkumar
,
Venkatram Vishwanath
,
John E Stone
,
Emad Tajkhorshid
,
Sarah A Harris
,
Arvind Ramanathan
Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM.
Acta crystallographica. Section D, Structural biology
Avec:
Soon Wen Hoh
,
Kevin Cowtan
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.
Nature methods
Avec:
Catherine L Lawson
,
Andriy Kryshtafovych
,
Paul D Adams
,
Pavel V Afonine
,
Matthew L Baker
,
Benjamin A Barad
,
Paul Bond
,
Renzhi Cao
,
Jianlin Cheng
,
Grzegorz Chojnowski
,
Kevin Cowtan
,
Ken A Dill
,
Frank DiMaio
,
Daniel P Farrell
,
James S Fraser
,
Mark A Herzik
,
Soon Wen Hoh
,
Jie Hou
,
Li-Wei Hung
,
Maxim Igaev
,
Agnel P Joseph
,
Daisuke Kihara
,
Dilip Kumar
,
Sumit Mittal
,
Bohdan Monastyrskyy
,
Mateusz Olek
,
Colin M Palmer
,
Ardan Patwardhan
,
Alberto Perez
,
Jonas Pfab
,
Grigore D Pintilie
,
Jane S Richardson
,
Peter B Rosenthal
,
Daipayan Sarkar
,
Luisa U Schäfer
,
Michael F Schmid
,
Gunnar F Schröder
,
Mrinal Shekhar
,
Dong Si
,
Abishek Singharoy
,
Genki Terashi
,
Thomas C Terwilliger
,
Andrea Vaiana
,
Liguo Wang
,
Zhe Wang
,
Stephanie A Wankowicz
,
Christopher J Williams
,
Martyn Winn
,
Tianqi Wu
,
Xiaodi Yu
,
Kaiming Zhang
,
Helen M Berman
,
Wah Chiu
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge.
Nature methods
Avec:
Catherine L Lawson
,
Andriy Kryshtafovych
,
Grigore D Pintilie
,
Stephen K Burley
,
Jiří Černý
,
Vincent B Chen
,
Paul Emsley
,
Alberto Gobbi
,
Andrzej Joachimiak
,
Sigrid Noreng
,
Michael G Prisant
,
Randy J Read
,
Jane S Richardson
,
Alexis L Rohou
,
Bohdan Schneider
,
Benjamin D Sellers
,
Chenghua Shao
,
Elizabeth Sourial
,
Chris I Williams
,
Christopher J Williams
,
Ying Yang
,
Venkat Abbaraju
,
Pavel V Afonine
,
Matthew L Baker
,
Paul S Bond
,
Tom L Blundell
,
Arthur Campbell
,
Renzhi Cao
,
Jianlin Cheng
,
Grzegorz Chojnowski
,
K D Cowtan
,
Frank DiMaio
,
Reza Esmaeeli
,
Nabin Giri
,
Helmut Grubmüller
,
Soon Wen Hoh
,
Jie Hou
,
Corey F Hryc
,
Carola Hunte
,
Maxim Igaev
,
Agnel P Joseph
,
Wei-Chun Kao
,
Daisuke Kihara
,
Dilip Kumar
,
Lijun Lang
,
Sean Lin
,
Sai R Maddhuri Venkata Subramaniya
,
Sumit Mittal
,
Arup Mondal
,
Nigel W Moriarty
,
Andrew Muenks
,
Garib N Murshudov
,
Robert A Nicholls
,
Mateusz Olek
,
Colin M Palmer
,
Alberto Perez
,
Emmi Pohjolainen
,
Karunakar R Pothula
,
Christopher N Rowley
,
Daipayan Sarkar
,
Luisa U Schäfer
,
Christopher J Schlicksup
,
Gunnar F Schröder
,
Mrinal Shekhar
,
Dong Si
,
Abhishek Singharoy
,
Oleg V Sobolev
,
Genki Terashi
,
Andrea C Vaiana
,
Sundeep C Vedithi
,
Jacob Verburgt
,
Xiao Wang
,
Rangana Warshamanage
,
Martyn D Winn
,
Simone Weyand
,
Keitaro Yamashita
,
Minglei Zhao
,
Michael F Schmid
,
Helen M Berman
,
Wah Chiu
Cryo-EM single-particle structure refinement and map calculation using Servalcat.
Acta crystallographica. Section D, Structural biology
Avec:
Keitaro Yamashita
,
Colin M Palmer
,
Garib N Murshudov
Overview and applications of map and model validation tools in the CCP-EM software suite.
Faraday discussions
Avec:
Agnel Praveen Joseph
,
Sony Malhotra
,
Martyn D Winn
Atomic model validation using the CCP-EM software suite.
Acta crystallographica. Section D, Structural biology
Avec:
Agnel Praveen Joseph
,
Mateusz Olek
,
Sony Malhotra
,
Peijun Zhang
,
Kevin Cowtan
,
Martyn D Winn
Improving sampling of crystallographic disorder in ensemble refinement.
Acta crystallographica. Section D, Structural biology
Avec:
Nicoleta Ploscariu
,
Piet Gros
,
Nicholas M Pearce
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge.
Research square
Avec:
Catherine Lawson
,
Andriy Kryshtafovych
,
Grigore Pintilie
,
Stephen Burley
,
Jiri Cerny
,
Vincent Chen
,
Paul Emsley
,
Alberto Gobbi
,
Andrzej Joachimiak
,
Sigrid Noreng
,
Michael Prisant
,
Randy Read
,
Jane Richardson
,
Alexis Rohou
,
Bohdan Schneider
,
Benjamin Sellers
,
Chenghua Chao
,
Elizabeth Sourial
,
Chris Williams
,
Christopher Williams
,
Ying Yang
,
Venkat Abbaraju
,
Pavel V Afonine
,
Matthew Baker
,
Paul Bond
,
Tom Blundell
,
Arthur Campbell
,
Renzhi Cao
,
Jianlin Cheng
,
Grzegorz Chojnowski
,
Kevin Cowtan
,
Frank Dimaio
,
Reza Esmaeeli
,
Nabin Giri
,
Helmut Grubmüller
,
Soon Wen Hoh
,
Jie Hou
,
Corey Hryc
,
Carola Hunte
,
Maxim Igaev
,
Agnel Joseph
,
Wei-Chun Kao
,
Daisuke Kihara
,
Dilip Kumar
,
Lijun Lang
,
Sean Lin
,
Sai Raghavendra Maddhuri Venkata Subramaniya
,
Sumit Mittal
,
Arup Mondal
,
Nigel Moriarty
,
Andrew Muenks
,
Garib Murshudov
,
Robert Nicholls
,
Mateusz Olek
,
Colin Palmer
,
Alberto Perez
,
Emmi Pohjolainen
,
Karunakar Pothula
,
Christopher Rowley
,
Daipayan Sarkar
,
Luisa Schäfer
,
Christopher Schlicksup
,
Gunnar Schroeder
,
Mrinal Shekhar
,
Dong Si
,
Abhishek Singharoy
,
Oleg Sobolev
,
Genki Terashi
,
Andrea Vaiana
,
Sundeep Vedithi
,
Jacob Verburgt
,
Xiao Wang
,
Rangana Warshamanage
,
Martyn Winn
,
Simone Weyand
,
Keitaro Yamashita
,
Minglei Zhao
,
Michael Schmid
,
Helen Berman
,
Wah Chiu
Roodmus: a toolkit for benchmarking heterogeneous electron cryo-microscopy reconstructions.
IUCrJ
Avec:
Maarten Joosten
,
Joel Greer
,
James Parkhurst
,
Arjen J Jakobi
Réseau de co-auteurs
Soon Wen Hoh
4 collaborations
Kevin Cowtan
4 collaborations
Mateusz Olek
4 collaborations
Agnel Praveen Joseph
3 collaborations
Martyn Winn
3 collaborations
Andriy Kryshtafovych
3 collaborations
Pavel V Afonine
3 collaborations
Renzhi Cao
3 collaborations
Jianlin Cheng
3 collaborations
Grzegorz Chojnowski
3 collaborations
Jie Hou
3 collaborations
Maxim Igaev
3 collaborations
Daisuke Kihara
3 collaborations
Dilip Kumar
3 collaborations
Sumit Mittal
3 collaborations
Colin M Palmer
3 collaborations
Alberto Perez
3 collaborations
Daipayan Sarkar
3 collaborations
Mrinal Shekhar
3 collaborations
Dong Si
3 collaborations
Genki Terashi
3 collaborations
Wah Chiu
3 collaborations
Martyn D Winn
3 collaborations
Keitaro Yamashita
3 collaborations
Ardan Patwardhan
2 collaborations
Catherine L Lawson
2 collaborations
Matthew L Baker
2 collaborations
Paul Bond
2 collaborations
Frank DiMaio
2 collaborations
Agnel P Joseph
2 collaborations
Grigore D Pintilie
2 collaborations
Jane S Richardson
2 collaborations
Luisa U Schäfer
2 collaborations
Michael F Schmid
2 collaborations
Gunnar F Schröder
2 collaborations
Andrea Vaiana
2 collaborations
Christopher J Williams
2 collaborations
Helen M Berman
2 collaborations
Paul Emsley
2 collaborations
Alberto Gobbi
2 collaborations
Andrzej Joachimiak
2 collaborations
Sigrid Noreng
2 collaborations
Bohdan Schneider
2 collaborations
Elizabeth Sourial
2 collaborations
Ying Yang
2 collaborations
Venkat Abbaraju
2 collaborations
Arthur Campbell
2 collaborations
Reza Esmaeeli
2 collaborations
Nabin Giri
2 collaborations
Helmut Grubmüller
2 collaborations
Carola Hunte
2 collaborations
Wei-Chun Kao
2 collaborations
Lijun Lang
2 collaborations
Sean Lin
2 collaborations
Arup Mondal
2 collaborations
Andrew Muenks
2 collaborations
Garib N Murshudov
2 collaborations
Emmi Pohjolainen
2 collaborations
Abhishek Singharoy
2 collaborations
Jacob Verburgt
2 collaborations
Xiao Wang
2 collaborations
Rangana Warshamanage
2 collaborations
Simone Weyand
2 collaborations
Minglei Zhao
2 collaborations
Sony Malhotra
2 collaborations
Ingvar Lagerstedt
1 collaboration
Arjen Jakobi
1 collaboration
Maya Topf
1 collaboration
J M Short
1 collaboration
C M Palmer
1 collaboration
T Burnley
1 collaboration
M D Winn
1 collaboration
Q Zhang
1 collaboration
B V Venkataram Prasad
1 collaboration
S Chen
1 collaboration
R A Crowther
1 collaboration
P N T Unwin
1 collaboration
R Henderson
1 collaboration
Anda Trifan
1 collaboration
Defne Gorgun
1 collaboration
Michael Salim
1 collaboration
Zongyi Li
1 collaboration
Alexander Brace
1 collaboration
Maxim Zvyagin
1 collaboration
Heng Ma
1 collaboration
Austin Clyde
1 collaboration
David Clark
1 collaboration
David J Hardy
1 collaboration
Lei Huang
1 collaboration
John McCalpin
1 collaboration
Murali Emani
1 collaboration
Hyenseung Yoo
1 collaboration
Junqi Yin
1 collaboration
Aristeidis Tsaris
1 collaboration
Vishal Subbiah
1 collaboration
Tanveer Raza
1 collaboration
Jessica Liu
1 collaboration
Noah Trebesch
1 collaboration
Geoffrey Wells
1 collaboration
Venkatesh Mysore
1 collaboration
Thomas Gibbs
1 collaboration
James Phillips
1 collaboration
S Chakra Chennubhotla
1 collaboration
Ian Foster
1 collaboration
Rick Stevens
1 collaboration
Anima Anandkumar
1 collaboration
Venkatram Vishwanath
1 collaboration
John E Stone
1 collaboration
Emad Tajkhorshid
1 collaboration
Sarah A Harris
1 collaboration
Arvind Ramanathan
1 collaboration
Paul D Adams
1 collaboration
Benjamin A Barad
1 collaboration
Ken A Dill
1 collaboration
Daniel P Farrell
1 collaboration
James S Fraser
1 collaboration
Mark A Herzik
1 collaboration
Li-Wei Hung
1 collaboration
Bohdan Monastyrskyy
1 collaboration
Jonas Pfab
1 collaboration
Peter B Rosenthal
1 collaboration
Abishek Singharoy
1 collaboration
Thomas C Terwilliger
1 collaboration
Liguo Wang
1 collaboration
Zhe Wang
1 collaboration
Stephanie A Wankowicz
1 collaboration
Tianqi Wu
1 collaboration
Xiaodi Yu
1 collaboration
Kaiming Zhang
1 collaboration
Stephen K Burley
1 collaboration
Jiří Černý
1 collaboration
Vincent B Chen
1 collaboration
Michael G Prisant
1 collaboration
Randy J Read
1 collaboration
Alexis L Rohou
1 collaboration
Benjamin D Sellers
1 collaboration
Chenghua Shao
1 collaboration
Chris I Williams
1 collaboration
Paul S Bond
1 collaboration
Tom L Blundell
1 collaboration
K D Cowtan
1 collaboration
Corey F Hryc
1 collaboration
Sai R Maddhuri Venkata Subramaniya
1 collaboration
Nigel W Moriarty
1 collaboration
Robert A Nicholls
1 collaboration
Karunakar R Pothula
1 collaboration
Christopher N Rowley
1 collaboration
Christopher J Schlicksup
1 collaboration
Oleg V Sobolev
1 collaboration
Andrea C Vaiana
1 collaboration
Sundeep C Vedithi
1 collaboration
Peijun Zhang
1 collaboration
Nicoleta Ploscariu
1 collaboration
Piet Gros
1 collaboration
Nicholas M Pearce
1 collaboration
Catherine Lawson
1 collaboration
Grigore Pintilie
1 collaboration
Stephen Burley
1 collaboration
Jiri Cerny
1 collaboration
Vincent Chen
1 collaboration
Michael Prisant
1 collaboration
Randy Read
1 collaboration
Jane Richardson
1 collaboration
Alexis Rohou
1 collaboration
Benjamin Sellers
1 collaboration
Chenghua Chao
1 collaboration
Chris Williams
1 collaboration
Christopher Williams
1 collaboration
Matthew Baker
1 collaboration
Tom Blundell
1 collaboration
Frank Dimaio
1 collaboration
Corey Hryc
1 collaboration
Agnel Joseph
1 collaboration
Sai Raghavendra Maddhuri Venkata Subramaniya
1 collaboration
Nigel Moriarty
1 collaboration
Garib Murshudov
1 collaboration
Robert Nicholls
1 collaboration
Colin Palmer
1 collaboration
Karunakar Pothula
1 collaboration
Christopher Rowley
1 collaboration
Luisa Schäfer
1 collaboration
Christopher Schlicksup
1 collaboration
Gunnar Schroeder
1 collaboration
Oleg Sobolev
1 collaboration
Sundeep Vedithi
1 collaboration
Michael Schmid
1 collaboration
Helen Berman
1 collaboration
Maarten Joosten
1 collaboration
Joel Greer
1 collaboration
James Parkhurst
1 collaboration
Arjen J Jakobi
1 collaboration