Nicole Rusk

Affiliations

Computational Oncology Service, Epidemiology & Biostatistics Department, Memorial Sloan Kettering Cancer Center, New York, USA.

Publications (12)

Resource-efficient pooled sequencing expands translational impact in solid tumors.

Kidney cancer journal : official journal of the Kidney Cancer Association

Avec: Renzo G DiNatale , Roy Mano , Vladimir Makarov , Esther Drill , Andrew Winer , Alexander Sankin , Angela Yoo , Benjamin A Freeman , James J Hsieh , Ying-Bei Chen , Jonathan A Coleman , Michael Berger , Irina Ostrovnaya , Timothy A Chan , Paul Russo , Ed Reznik , A Ari Hakimi

The Search for Genomic Biomarkers of Response to Immunotherapy in Ovarian Cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Duaa H Al-Rawi , Claire F Friedman

Clonal fitness inferred from time-series modelling of single-cell cancer genomes.

Nature

Avec: Sohrab Salehi , Farhia Kabeer , Nicholas Ceglia , Mirela Andronescu , Marc J Williams , Kieran R Campbell , Tehmina Masud , Beixi Wang , Justina Biele , Jazmine Brimhall , David Gee , Hakwoo Lee , Jerome Ting , Allen W Zhang , Hoa Tran , Ciara O'Flanagan , Fatemeh Dorri , Teresa Ruiz de Algara , So Ra Lee , Brian Yu Chieh Cheng , Peter Eirew , Takako Kono , Jenifer Pham , Diljot Grewal , Daniel Lai , Richard Moore , Andrew J Mungall , Marco A Marra , Auteur inconnu , Andrew McPherson , Alexandre Bouchard-Côté , Samuel Aparicio , Sohrab P Shah

Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes.

Nature genetics

Avec: Minsoo Kim , Alexander N Gorelick , Ignacio Vàzquez-García , Marc J Williams , Sohrab Salehi , Hongyu Shi , Adam C Weiner , Nick Ceglia , Tyler Funnell , Tricia Park , Sonia Boscenco , Ciara H O'Flanagan , Hui Jiang , Diljot Grewal , Cerise Tang , Payam A Gammage , Andrew McPherson , Sam Aparicio , Sohrab P Shah , Ed Reznik

Single-cell DNA replication dynamics in genomically unstable cancers.

bioRxiv : the preprint server for biology

Avec: Adam C Weiner , Marc J Williams , Hongyu Shi , Ignacio Vázquez-García , Sohrab Salehi , Samuel Aparicio , Sohrab P Shah , Andrew McPherson

Single-cell genomic variation induced by mutational processes in cancer.

Nature

Avec: Tyler Funnell , Ciara H O'Flanagan , Marc J Williams , Andrew McPherson , Steven McKinney , Farhia Kabeer , Hakwoo Lee , Sohrab Salehi , Ignacio Vázquez-García , Hongyu Shi , Emily Leventhal , Tehmina Masud , Peter Eirew , Damian Yap , Allen W Zhang , Jamie L P Lim , Beixi Wang , Jazmine Brimhall , Justina Biele , Jerome Ting , Vinci Au , Michael Van Vliet , Yi Fei Liu , Sean Beatty , Daniel Lai , Jenifer Pham , Diljot Grewal , Douglas Abrams , Eliyahu Havasov , Samantha Leung , Viktoria Bojilova , Richard A Moore , Florian Uhlitz , Nicholas Ceglia , Adam C Weiner , Elena Zaikova , J Maxwell Douglas , Dmitriy Zamarin , Britta Weigelt , Sarah H Kim , Arnaud Da Cruz Paula , Jorge S Reis-Filho , Spencer D Martin , Yangguang Li , Hong Xu , Teresa Ruiz de Algara , So Ra Lee , Viviana Cerda Llanos , David G Huntsman , Jessica N McAlpine , Auteur inconnu , Sohrab P Shah , Samuel Aparicio

Ovarian cancer mutational processes drive site-specific immune evasion.

Nature

Avec: Ignacio Vázquez-García , Florian Uhlitz , Nicholas Ceglia , Jamie L P Lim , Michelle Wu , Neeman Mohibullah , Juliana Niyazov , Arvin Eric B Ruiz , Kevin M Boehm , Viktoria Bojilova , Christopher J Fong , Tyler Funnell , Diljot Grewal , Eliyahu Havasov , Samantha Leung , Arfath Pasha , Druv M Patel , Maryam Pourmaleki , Hongyu Shi , Rami Vanguri , Marc J Williams , Allen W Zhang , Vance Broach , Dennis S Chi , Arnaud Da Cruz Paula , Ginger J Gardner , Sarah H Kim , Matthew Lennon , Kara Long Roche , Yukio Sonoda , Oliver Zivanovic , Ritika Kundra , Agnes Viale , Fatemeh N Derakhshan , Luke Geneslaw , Shirin Issa Bhaloo , Ana Maroldi , Rahelly Nunez , Fresia Pareja , Anthe Stylianou , Mahsa Vahdatinia , Yonina Bykov , Rachel N Grisham , Ying L Liu , Yulia Lakhman , Ines Nikolovski , Daniel Kelly , Jianjiong Gao , Andrea Schietinger , Travis J Hollmann , Samuel F Bakhoum , Robert A Soslow , Lora H Ellenson , Nadeem R Abu-Rustum , Carol Aghajanian , Claire F Friedman , Andrew McPherson , Britta Weigelt , Dmitriy Zamarin , Sohrab P Shah

Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector.

Nature communications

Avec: Nicholas Ceglia , Zachary Sethna , Samuel S Freeman , Florian Uhlitz , Viktoria Bojilova , Bharat Burman , Andrew Chow , Sohrab Salehi , Farhia Kabeer , Samuel Aparicio , Benjamin D Greenbaum , Sohrab P Shah , Andrew McPherson

Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer.

bioRxiv : the preprint server for biology

Avec: Andrew McPherson , Ignacio Vázquez-García , Matthew A Myers , Matthew Zatzman , Duaa Al-Rawi , Adam Weiner , Samuel Freeman , Neeman Mohibullah , Gryte Satas , Marc J Williams , Nicholas Ceglia , Allen W Zhang , Jun Li , Jamie L P Lim , Michelle Wu , Seongmin Choi , Eliyahu Havasov , Diljot Grewal , Hongyu Shi , Minsoo Kim , Roland Schwarz , Tom Kaufmann , Khanh Ngoc Dinh , Florian Uhlitz , Julie Tran , Yushi Wu , Ruchi Patel , Satish Ramakrishnan , DooA Kim , Justin Clarke , Hunter Green , Emily Ali , Melody DiBona , Nancy Varice , Ritika Kundra , Vance Broach , Ginger J Gardner , Kara Long Roche , Yukio Sonoda , Oliver Zivanovic , Sarah H Kim , Rachel N Grisham , Ying L Liu , Agnes Viale , Yulia Lakhman , Lora H Ellenson , Simon Tavaré , Samuel Aparicio , Dennis S Chi , Carol Aghajanian , Nadeem R Abu-Rustum , Claire F Friedman , Dmitriy Zamarin , Britta Weigelt , Samuel F Bakhoum , Sohrab P Shah

Tracking clonal evolution of drug resistance in ovarian cancer patients by exploiting structural variants in cfDNA.

bioRxiv : the preprint server for biology

Avec: Marc J Williams , Ignacio Vázquez-García , Grittney Tam , Michelle Wu , Nancy Varice , Eliyahu Havasov , Hongyu Shi , Gryte Satas , Hannah J Lees , Jake June-Koo Lee , Matthew A Myers , Matthew Zatzman , Emily Ali , Ronak H Shah , Michael F Berger , Neeman Mohibullah , Yulia Lakhman , Dennis S Chi , Nadeem R Abu-Rustum , Carol Aghajanian , Andrew McPherson , Dmitriy Zamarin , Brian Loomis , Britta Weigelt , Claire F Friedman , Sohrab P Shah

Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data.

Nature communications

Avec: Adam C Weiner , Marc J Williams , Hongyu Shi , Ignacio Vázquez-García , Sohrab Salehi , Samuel Aparicio , Sohrab P Shah , Andrew McPherson

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal.

Cancer research

Avec: Ino de Bruijn , Ritika Kundra , Brooke Mastrogiacomo , Thinh Ngoc Tran , Luke Sikina , Tali Mazor , Xiang Li , Angelica Ochoa , Gaofei Zhao , Bryan Lai , Adam Abeshouse , Diana Baiceanu , Ersin Ciftci , Ugur Dogrusoz , Andrew Dufilie , Ziya Erkoc , Elena Garcia Lara , Zhaoyuan Fu , Benjamin Gross , Charles Haynes , Allison Heath , David Higgins , Prasanna Jagannathan , Karthik Kalletla , Priti Kumari , James Lindsay , Aaron Lisman , Bas Leenknegt , Pieter Lukasse , Divya Madela , Ramyasree Madupuri , Pim van Nierop , Oleguer Plantalech , Joyce Quach , Adam C Resnick , Sander Y A Rodenburg , Baby A Satravada , Fedde Schaeffer , Robert Sheridan , Jessica Singh , Rajat Sirohi , Selcuk Onur Sumer , Sjoerd van Hagen , Avery Wang , Manda Wilson , Hongxin Zhang , Kelsey Zhu , Samantha Brown , Jessica A Lavery , Katherine S Panageas , Julia E Rudolph , Michele L LeNoue-Newton , Jeremy L Warner , Xindi Guo , Haley Hunter-Zinck , Thomas V Yu , Shirin Pilai , Chelsea Nichols , Stuart M Gardos , John Philip , Auteur inconnu , Kenneth L Kehl , Gregory J Riely , Deborah Schrag , Jocelyn Lee , Michael V Fiandalo , Shawn M Sweeney , Trevor J Pugh , Chris Sander , Ethan Cerami , Jianjiong Gao , Nikolaus Schultz

Réseau de co-auteurs

Andrew McPherson 9 collaborations

Sohrab P Shah 9 collaborations

Marc J Williams 8 collaborations

Hongyu Shi 7 collaborations

Sohrab Salehi 6 collaborations

Samuel Aparicio 6 collaborations

Ignacio Vázquez-García 6 collaborations

Nicholas Ceglia 5 collaborations

Diljot Grewal 5 collaborations

Claire F Friedman 4 collaborations

Allen W Zhang 4 collaborations

Adam C Weiner 4 collaborations

Eliyahu Havasov 4 collaborations

Florian Uhlitz 4 collaborations

Dmitriy Zamarin 4 collaborations

Britta Weigelt 4 collaborations

Farhia Kabeer 3 collaborations

None None 3 collaborations

Tyler Funnell 3 collaborations

Jamie L P Lim 3 collaborations

Viktoria Bojilova 3 collaborations

Sarah H Kim 3 collaborations

Michelle Wu 3 collaborations

Neeman Mohibullah 3 collaborations

Dennis S Chi 3 collaborations

Ritika Kundra 3 collaborations

Yulia Lakhman 3 collaborations

Nadeem R Abu-Rustum 3 collaborations

Carol Aghajanian 3 collaborations

Ed Reznik 2 collaborations

Tehmina Masud 2 collaborations

Beixi Wang 2 collaborations

Justina Biele 2 collaborations

Jazmine Brimhall 2 collaborations

Hakwoo Lee 2 collaborations

Jerome Ting 2 collaborations

Teresa Ruiz de Algara 2 collaborations

So Ra Lee 2 collaborations

Peter Eirew 2 collaborations

Jenifer Pham 2 collaborations

Daniel Lai 2 collaborations

Minsoo Kim 2 collaborations

Ciara H O'Flanagan 2 collaborations

Samantha Leung 2 collaborations

Arnaud Da Cruz Paula 2 collaborations

Vance Broach 2 collaborations

Ginger J Gardner 2 collaborations

Kara Long Roche 2 collaborations

Yukio Sonoda 2 collaborations

Oliver Zivanovic 2 collaborations

Agnes Viale 2 collaborations

Rachel N Grisham 2 collaborations

Ying L Liu 2 collaborations

Jianjiong Gao 2 collaborations

Samuel F Bakhoum 2 collaborations

Lora H Ellenson 2 collaborations

Matthew A Myers 2 collaborations

Matthew Zatzman 2 collaborations

Gryte Satas 2 collaborations

Emily Ali 2 collaborations

Nancy Varice 2 collaborations

Renzo G DiNatale 1 collaboration

Roy Mano 1 collaboration

Vladimir Makarov 1 collaboration

Esther Drill 1 collaboration

Andrew Winer 1 collaboration

Alexander Sankin 1 collaboration

Angela Yoo 1 collaboration

Benjamin A Freeman 1 collaboration

James J Hsieh 1 collaboration

Ying-Bei Chen 1 collaboration

Jonathan A Coleman 1 collaboration

Michael Berger 1 collaboration

Irina Ostrovnaya 1 collaboration

Timothy A Chan 1 collaboration

Paul Russo 1 collaboration

A Ari Hakimi 1 collaboration

Duaa H Al-Rawi 1 collaboration

Mirela Andronescu 1 collaboration

Kieran R Campbell 1 collaboration

David Gee 1 collaboration

Hoa Tran 1 collaboration

Ciara O'Flanagan 1 collaboration

Fatemeh Dorri 1 collaboration

Brian Yu Chieh Cheng 1 collaboration

Takako Kono 1 collaboration

Richard Moore 1 collaboration

Andrew J Mungall 1 collaboration

Marco A Marra 1 collaboration

Alexandre Bouchard-Côté 1 collaboration

Alexander N Gorelick 1 collaboration

Ignacio Vàzquez-García 1 collaboration

Nick Ceglia 1 collaboration

Tricia Park 1 collaboration

Sonia Boscenco 1 collaboration

Hui Jiang 1 collaboration

Cerise Tang 1 collaboration

Payam A Gammage 1 collaboration

Sam Aparicio 1 collaboration

Steven McKinney 1 collaboration

Emily Leventhal 1 collaboration

Damian Yap 1 collaboration

Vinci Au 1 collaboration

Michael Van Vliet 1 collaboration

Yi Fei Liu 1 collaboration

Sean Beatty 1 collaboration

Douglas Abrams 1 collaboration

Richard A Moore 1 collaboration

Elena Zaikova 1 collaboration

J Maxwell Douglas 1 collaboration

Jorge S Reis-Filho 1 collaboration

Spencer D Martin 1 collaboration

Yangguang Li 1 collaboration

Hong Xu 1 collaboration

Viviana Cerda Llanos 1 collaboration

David G Huntsman 1 collaboration

Jessica N McAlpine 1 collaboration

Juliana Niyazov 1 collaboration

Arvin Eric B Ruiz 1 collaboration

Kevin M Boehm 1 collaboration

Christopher J Fong 1 collaboration

Arfath Pasha 1 collaboration

Druv M Patel 1 collaboration

Maryam Pourmaleki 1 collaboration

Rami Vanguri 1 collaboration

Matthew Lennon 1 collaboration

Fatemeh N Derakhshan 1 collaboration

Luke Geneslaw 1 collaboration

Shirin Issa Bhaloo 1 collaboration

Ana Maroldi 1 collaboration

Rahelly Nunez 1 collaboration

Fresia Pareja 1 collaboration

Anthe Stylianou 1 collaboration

Mahsa Vahdatinia 1 collaboration

Yonina Bykov 1 collaboration

Ines Nikolovski 1 collaboration

Daniel Kelly 1 collaboration

Andrea Schietinger 1 collaboration

Travis J Hollmann 1 collaboration

Robert A Soslow 1 collaboration

Zachary Sethna 1 collaboration

Samuel S Freeman 1 collaboration

Bharat Burman 1 collaboration

Andrew Chow 1 collaboration

Benjamin D Greenbaum 1 collaboration

Duaa Al-Rawi 1 collaboration

Adam Weiner 1 collaboration

Samuel Freeman 1 collaboration

Jun Li 1 collaboration

Seongmin Choi 1 collaboration

Roland Schwarz 1 collaboration

Tom Kaufmann 1 collaboration

Khanh Ngoc Dinh 1 collaboration

Julie Tran 1 collaboration

Yushi Wu 1 collaboration

Ruchi Patel 1 collaboration

Satish Ramakrishnan 1 collaboration

DooA Kim 1 collaboration

Justin Clarke 1 collaboration

Hunter Green 1 collaboration

Melody DiBona 1 collaboration

Simon Tavaré 1 collaboration

Grittney Tam 1 collaboration

Hannah J Lees 1 collaboration

Jake June-Koo Lee 1 collaboration

Ronak H Shah 1 collaboration

Michael F Berger 1 collaboration

Brian Loomis 1 collaboration

Ino de Bruijn 1 collaboration

Brooke Mastrogiacomo 1 collaboration

Thinh Ngoc Tran 1 collaboration

Luke Sikina 1 collaboration

Tali Mazor 1 collaboration

Xiang Li 1 collaboration

Angelica Ochoa 1 collaboration

Gaofei Zhao 1 collaboration

Bryan Lai 1 collaboration

Adam Abeshouse 1 collaboration

Diana Baiceanu 1 collaboration

Ersin Ciftci 1 collaboration

Ugur Dogrusoz 1 collaboration

Andrew Dufilie 1 collaboration

Ziya Erkoc 1 collaboration

Elena Garcia Lara 1 collaboration

Zhaoyuan Fu 1 collaboration

Benjamin Gross 1 collaboration

Charles Haynes 1 collaboration

Allison Heath 1 collaboration

David Higgins 1 collaboration

Prasanna Jagannathan 1 collaboration

Karthik Kalletla 1 collaboration

Priti Kumari 1 collaboration

James Lindsay 1 collaboration

Aaron Lisman 1 collaboration

Bas Leenknegt 1 collaboration

Pieter Lukasse 1 collaboration

Divya Madela 1 collaboration

Ramyasree Madupuri 1 collaboration

Pim van Nierop 1 collaboration

Oleguer Plantalech 1 collaboration

Joyce Quach 1 collaboration

Adam C Resnick 1 collaboration

Sander Y A Rodenburg 1 collaboration

Baby A Satravada 1 collaboration

Fedde Schaeffer 1 collaboration

Robert Sheridan 1 collaboration

Jessica Singh 1 collaboration

Rajat Sirohi 1 collaboration

Selcuk Onur Sumer 1 collaboration

Sjoerd van Hagen 1 collaboration

Avery Wang 1 collaboration

Manda Wilson 1 collaboration

Hongxin Zhang 1 collaboration

Kelsey Zhu 1 collaboration

Samantha Brown 1 collaboration

Jessica A Lavery 1 collaboration

Katherine S Panageas 1 collaboration

Julia E Rudolph 1 collaboration

Michele L LeNoue-Newton 1 collaboration

Jeremy L Warner 1 collaboration

Xindi Guo 1 collaboration

Haley Hunter-Zinck 1 collaboration

Thomas V Yu 1 collaboration

Shirin Pilai 1 collaboration

Chelsea Nichols 1 collaboration

Stuart M Gardos 1 collaboration

John Philip 1 collaboration

Kenneth L Kehl 1 collaboration

Gregory J Riely 1 collaboration

Deborah Schrag 1 collaboration

Jocelyn Lee 1 collaboration

Michael V Fiandalo 1 collaboration

Shawn M Sweeney 1 collaboration

Trevor J Pugh 1 collaboration

Chris Sander 1 collaboration

Ethan Cerami 1 collaboration

Nikolaus Schultz 1 collaboration