Benjamin D Greenbaum

Affiliations

Computational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York State, United States of America.

Publications (8)

Probing T-cell response by sequence-based probabilistic modeling.

PLoS computational biology

Avec: Barbara Bravi , Vinod P Balachandran , Benjamin D Greenbaum , Aleksandra M Walczak , Thierry Mora , Rémi Monasson , Simona Cocco

The Heterogeneous Landscape and Early Evolution of Pathogen-Associated CpG Dinucleotides in SARS-CoV-2.

Molecular biology and evolution

Avec: Andrea Di Gioacchino , Petr Šulc , Anastassia V Komarova , Benjamin D Greenbaum , Rémi Monasson , Simona Cocco

Neoantigen quality predicts immunoediting in survivors of pancreatic cancer.

Nature

Avec: Marta Łuksza , Zachary M Sethna , Luis A Rojas , Jayon Lihm , Barbara Bravi , Yuval Elhanati , Kevin Soares , Masataka Amisaki , Anton Dobrin , David Hoyos , Pablo Guasp , Abderezak Zebboudj , Rebecca Yu , Adrienne Kaya Chandra , Theresa Waters , Zagaa Odgerel , Joanne Leung , Rajya Kappagantula , Alvin Makohon-Moore , Amber Johns , Anthony Gill , Mathieu Gigoux , Jedd Wolchok , Taha Merghoub , Michel Sadelain , Erin Patterson , Remi Monasson , Thierry Mora , Aleksandra M Walczak , Simona Cocco , Christine Iacobuzio-Donahue , Benjamin D Greenbaum , Vinod P Balachandran

Radiation therapy enhances immunotherapy response in microsatellite stable colorectal and pancreatic adenocarcinoma in a phase II trial.

Nature cancer

Avec: Aparna R Parikh , Annamaria Szabolcs , Jill N Allen , Jeffrey W Clark , Jennifer Y Wo , Michael Raabe , Hannah Thel , David Hoyos , Arnav Mehta , Sanya Arshad , David J Lieb , Lorraine C Drapek , Lawrence S Blaszkowsky , Bruce J Giantonio , Colin D Weekes , Andrew X Zhu , Lipika Goyal , Ryan D Nipp , Jon S Dubois , Emily E Van Seventer , Bronwen E Foreman , Lauren E Matlack , Leilana Ly , Jessica A Meurer , Nir Hacohen , David P Ryan , Beow Y Yeap , Ryan B Corcoran , Benjamin D Greenbaum , David T Ting , Theodore S Hong

Y RNAs are conserved endogenous RIG-I ligands across RNA virus infection and are targeted by HIV-1.

iScience

Avec: Nicolas Vabret , Valérie Najburg , Alexander Solovyov , Ramya Gopal , Christopher McClain , Petr Šulc , Sreekumar Balan , Yannis Rahou , Guillaume Beauclair , Maxime Chazal , Hugo Varet , Rachel Legendre , Odile Sismeiro , Raul Y Sanchez David , Lise Chauveau , Nolwenn Jouvenet , Martin Markowitz , Sylvie van der Werf , Olivier Schwartz , Frédéric Tangy , Nina Bhardwaj , Benjamin D Greenbaum , Anastassia V Komarova

Cancer cells co-evolve with retrotransposons to mitigate viral mimicry.

bioRxiv : the preprint server for biology

Avec: Siyu Sun , Jungeui Hong , Eunae You , Kaloyan M Tsanov , Jonathan Chacon-Barahona , Andrea Di Gioacchino , David Hoyos , Hao Li , Hua Jiang , Han Ly , Sajid Marhon , Rajmohan Murali , Pharto Chanda , Ali Karacay , Nicolas Vabret , Daniel D De Carvalho , John LaCava , Scott W Lowe , David T Ting , Christine A Iacobuzio-Donahue , Alexander Solovyov , Benjamin D Greenbaum

Tissue-specific features of the T cell repertoire after allogeneic hematopoietic cell transplantation in human and mouse.

Science translational medicine

Avec: Susan DeWolf , Yuval Elhanati , Katherine Nichols , Nicholas R Waters , Chi L Nguyen , John B Slingerland , Natasia Rodriguez , Olga Lyudovyk , Paul A Giardina , Anastasia I Kousa , Hana Andrlová , Nick Ceglia , Teng Fei , Rajya Kappagantula , Yanyun Li , Nathan Aleynick , Priscilla Baez , Rajmohan Murali , Akimasa Hayashi , Nicole Lee , Brianna Gipson , Madhumitha Rangesa , Zoe Katsamakis , Anqi Dai , Amanda G Blouin , Maria Arcila , Ignas Masilionis , Ronan Chaligne , Doris M Ponce , Heather J Landau , Ioannis Politikos , Roni Tamari , Alan M Hanash , Robert R Jenq , Sergio A Giralt , Kate A Markey , Yanming Zhang , Miguel-Angel Perales , Nicholas D Socci , Benjamin D Greenbaum , Christine A Iacobuzio-Donahue , Travis J Hollmann , Marcel R M van den Brink , Jonathan U Peled

Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer.

Nature genetics

Avec: Arvind Ravi , Matthew D Hellmann , Monica B Arniella , Mark Holton , Samuel S Freeman , Vivek Naranbhai , Chip Stewart , Ignaty Leshchiner , Jaegil Kim , Yo Akiyama , Aaron T Griffin , Natalie I Vokes , Mustafa Sakhi , Vashine Kamesan , Hira Rizvi , Biagio Ricciuti , Patrick M Forde , Valsamo Anagnostou , Jonathan W Riess , Don L Gibbons , Nathan A Pennell , Vamsidhar Velcheti , Subba R Digumarthy , Mari Mino-Kenudson , Andrea Califano , John V Heymach , Roy S Herbst , Julie R Brahmer , Kurt A Schalper , Victor E Velculescu , Brian S Henick , Naiyer Rizvi , Pasi A Jänne , Mark M Awad , Andrew Chow , Benjamin D Greenbaum , Marta Luksza , Alice T Shaw , Jedd Wolchok , Nir Hacohen , Gad Getz , Justin F Gainor

Réseau de co-auteurs

Simona Cocco 3 collaborations

David Hoyos 3 collaborations

Barbara Bravi 2 collaborations

Vinod P Balachandran 2 collaborations

Aleksandra M Walczak 2 collaborations

Thierry Mora 2 collaborations

Rémi Monasson 2 collaborations

Andrea Di Gioacchino 2 collaborations

Petr Šulc 2 collaborations

Anastassia V Komarova 2 collaborations

Yuval Elhanati 2 collaborations

Rajya Kappagantula 2 collaborations

Jedd Wolchok 2 collaborations

Nir Hacohen 2 collaborations

David T Ting 2 collaborations

Nicolas Vabret 2 collaborations

Alexander Solovyov 2 collaborations

Rajmohan Murali 2 collaborations

Christine A Iacobuzio-Donahue 2 collaborations

Marta Łuksza 1 collaboration

Zachary M Sethna 1 collaboration

Luis A Rojas 1 collaboration

Jayon Lihm 1 collaboration

Kevin Soares 1 collaboration

Masataka Amisaki 1 collaboration

Anton Dobrin 1 collaboration

Pablo Guasp 1 collaboration

Abderezak Zebboudj 1 collaboration

Rebecca Yu 1 collaboration

Adrienne Kaya Chandra 1 collaboration

Theresa Waters 1 collaboration

Zagaa Odgerel 1 collaboration

Joanne Leung 1 collaboration

Alvin Makohon-Moore 1 collaboration

Amber Johns 1 collaboration

Anthony Gill 1 collaboration

Mathieu Gigoux 1 collaboration

Taha Merghoub 1 collaboration

Michel Sadelain 1 collaboration

Erin Patterson 1 collaboration

Remi Monasson 1 collaboration

Christine Iacobuzio-Donahue 1 collaboration

Aparna R Parikh 1 collaboration

Annamaria Szabolcs 1 collaboration

Jill N Allen 1 collaboration

Jeffrey W Clark 1 collaboration

Jennifer Y Wo 1 collaboration

Michael Raabe 1 collaboration

Hannah Thel 1 collaboration

Arnav Mehta 1 collaboration

Sanya Arshad 1 collaboration

David J Lieb 1 collaboration

Lorraine C Drapek 1 collaboration

Lawrence S Blaszkowsky 1 collaboration

Bruce J Giantonio 1 collaboration

Colin D Weekes 1 collaboration

Andrew X Zhu 1 collaboration

Lipika Goyal 1 collaboration

Ryan D Nipp 1 collaboration

Jon S Dubois 1 collaboration

Emily E Van Seventer 1 collaboration

Bronwen E Foreman 1 collaboration

Lauren E Matlack 1 collaboration

Leilana Ly 1 collaboration

Jessica A Meurer 1 collaboration

David P Ryan 1 collaboration

Beow Y Yeap 1 collaboration

Ryan B Corcoran 1 collaboration

Theodore S Hong 1 collaboration

Valérie Najburg 1 collaboration

Ramya Gopal 1 collaboration

Christopher McClain 1 collaboration

Sreekumar Balan 1 collaboration

Yannis Rahou 1 collaboration

Guillaume Beauclair 1 collaboration

Maxime Chazal 1 collaboration

Hugo Varet 1 collaboration

Rachel Legendre 1 collaboration

Odile Sismeiro 1 collaboration

Raul Y Sanchez David 1 collaboration

Lise Chauveau 1 collaboration

Nolwenn Jouvenet 1 collaboration

Martin Markowitz 1 collaboration

Sylvie van der Werf 1 collaboration

Olivier Schwartz 1 collaboration

Frédéric Tangy 1 collaboration

Nina Bhardwaj 1 collaboration

Siyu Sun 1 collaboration

Jungeui Hong 1 collaboration

Eunae You 1 collaboration

Kaloyan M Tsanov 1 collaboration

Jonathan Chacon-Barahona 1 collaboration

Hao Li 1 collaboration

Hua Jiang 1 collaboration

Han Ly 1 collaboration

Sajid Marhon 1 collaboration

Pharto Chanda 1 collaboration

Ali Karacay 1 collaboration

Daniel D De Carvalho 1 collaboration

John LaCava 1 collaboration

Scott W Lowe 1 collaboration

Susan DeWolf 1 collaboration

Katherine Nichols 1 collaboration

Nicholas R Waters 1 collaboration

Chi L Nguyen 1 collaboration

John B Slingerland 1 collaboration

Natasia Rodriguez 1 collaboration

Olga Lyudovyk 1 collaboration

Paul A Giardina 1 collaboration

Anastasia I Kousa 1 collaboration

Hana Andrlová 1 collaboration

Nick Ceglia 1 collaboration

Teng Fei 1 collaboration

Yanyun Li 1 collaboration

Nathan Aleynick 1 collaboration

Priscilla Baez 1 collaboration

Akimasa Hayashi 1 collaboration

Nicole Lee 1 collaboration

Brianna Gipson 1 collaboration

Madhumitha Rangesa 1 collaboration

Zoe Katsamakis 1 collaboration

Anqi Dai 1 collaboration

Amanda G Blouin 1 collaboration

Maria Arcila 1 collaboration

Ignas Masilionis 1 collaboration

Ronan Chaligne 1 collaboration

Doris M Ponce 1 collaboration

Heather J Landau 1 collaboration

Ioannis Politikos 1 collaboration

Roni Tamari 1 collaboration

Alan M Hanash 1 collaboration

Robert R Jenq 1 collaboration

Sergio A Giralt 1 collaboration

Kate A Markey 1 collaboration

Yanming Zhang 1 collaboration

Miguel-Angel Perales 1 collaboration

Nicholas D Socci 1 collaboration

Travis J Hollmann 1 collaboration

Marcel R M van den Brink 1 collaboration

Jonathan U Peled 1 collaboration

Arvind Ravi 1 collaboration

Matthew D Hellmann 1 collaboration

Monica B Arniella 1 collaboration

Mark Holton 1 collaboration

Samuel S Freeman 1 collaboration

Vivek Naranbhai 1 collaboration

Chip Stewart 1 collaboration

Ignaty Leshchiner 1 collaboration

Jaegil Kim 1 collaboration

Yo Akiyama 1 collaboration

Aaron T Griffin 1 collaboration

Natalie I Vokes 1 collaboration

Mustafa Sakhi 1 collaboration

Vashine Kamesan 1 collaboration

Hira Rizvi 1 collaboration

Biagio Ricciuti 1 collaboration

Patrick M Forde 1 collaboration

Valsamo Anagnostou 1 collaboration

Jonathan W Riess 1 collaboration

Don L Gibbons 1 collaboration

Nathan A Pennell 1 collaboration

Vamsidhar Velcheti 1 collaboration

Subba R Digumarthy 1 collaboration

Mari Mino-Kenudson 1 collaboration

Andrea Califano 1 collaboration

John V Heymach 1 collaboration

Roy S Herbst 1 collaboration

Julie R Brahmer 1 collaboration

Kurt A Schalper 1 collaboration

Victor E Velculescu 1 collaboration

Brian S Henick 1 collaboration

Naiyer Rizvi 1 collaboration

Pasi A Jänne 1 collaboration

Mark M Awad 1 collaboration

Andrew Chow 1 collaboration

Marta Luksza 1 collaboration

Alice T Shaw 1 collaboration

Gad Getz 1 collaboration

Justin F Gainor 1 collaboration