Marc Robinson-Rechavi

Affiliations

Department of Ecology and Evolution, University of Lausanne, 1015, Lausanne, Switzerland.
Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.

Publications (34)

Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles.

Genome biology

Avec: Mathieu Seppey , Panagiotis Ioannidis , Brent C Emerson , Camille Pitteloud , Julien Roux , Hermes E Escalona , Duane D McKenna , Bernhard Misof , Seunggwan Shin , Xin Zhou , Robert M Waterhouse , Nadir Alvarez

OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.

Bioinformatics (Oxford, England)

Avec: Victor Rossier , Alex Warwick Vesztrocy , Christophe Dessimoz

Genomic Features of Parthenogenetic Animals.

The Journal of heredity

Avec: Kamil S Jaron , Jens Bast , Reuben W Nowell , T Rhyker Ranallo-Benavidez , Tanja Schwander

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection.

Genome research

Avec: Jialin Liu , Rebecca R Viales , Pierre Khoueiry , James P Reddington , Charles Girardot , Eileen E M Furlong ,

Convergent consequences of parthenogenesis on stick insect genomes.

Science advances

Avec: Kamil S Jaron , Darren J Parker , Yoann Anselmetti , Patrick Tran Van , Jens Bast , Zoé Dumas , Emeric Figuet , Clémentine M François , Keith Hayward , Victor Rossier , Paul Simion , Nicolas Galtier , Tanja Schwander

Parallel evolution of amphioxus and vertebrate small-scale gene duplications.

Genome biology

Avec: Marina Brasó-Vives , Ferdinand Marlétaz , Amina Echchiki , Federica Mantica , Rafael D Acemel , José L Gómez-Skarmeta , Diego A Hartasánchez , Lorlane Le Targa , Pierre Pontarotti , Juan J Tena , Ignacio Maeso , Hector Escriva , Manuel Irimia ,

Genome structures resolve the early diversification of teleost fishes.

Science (New York, N.Y.)

Avec: Elise Parey , Alexandra Louis , Jerome Montfort , Olivier Bouchez , Céline Roques , Carole Iampietro , Jerome Lluch , Adrien Castinel , Cécile Donnadieu , Thomas Desvignes , Christabel Floi Bucao , Elodie Jouanno , Ming Wen , Sahar Mejri , Ron Dirks , Hans Jansen , Christiaan Henkel , Wei-Jen Chen , Margot Zahm , Cédric Cabau , Christophe Klopp , Andrew W Thompson , Ingo Braasch , Guillaume Lecointre , Julien Bobe , John H Postlethwait , Camille Berthelot , Hugues Roest Crollius , Yann Guiguen

Correction to: Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae).

BMC genomics

Avec: Oliver M Selmoni , Diane Maitre , Julien Roux , Laetitia G E Wilkins , Lucas Marques da Cunha , Etienne L M Vermeirssen , Susanne Knörr , Claus Wedekind

Sex-biased gene expression is repeatedly masculinized in asexual females.

Nature communications

Avec: Darren J Parker , Jens Bast , Kirsten Jalvingh , Zoé Dumas , Tanja Schwander

Enabling semantic queries across federated bioinformatics databases.

Database : the journal of biological databases and curation

Avec: Ana Claudia Sima , Tarcisio Mendes de Farias , Erich Zbinden , Maria Anisimova , Manuel Gil , Heinz Stockinger , Kurt Stockinger , Christophe Dessimoz

Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.

Molecular ecology

Avec: Kirsten M Ellegaard , Silvia Brochet , German Bonilla-Rosso , Olivier Emery , Natasha Glover , Noushin Hadadi , Kamil S Jaron , Jan R van der Meer , Vladimir Sentchilo , Florian Tagini , Auteur inconnu , Philipp Engel

Repeated Evolution of Asexuality Involves Convergent Gene Expression Changes.

Molecular biology and evolution

Avec: Darren J Parker , Jens Bast , Kirsten Jalvingh , Zoé Dumas , Tanja Schwander

An ancient truncated duplication of the anti-Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family.

Molecular ecology resources

Avec: Ming Wen , Qiaowei Pan , Elodie Jouanno , Jerome Montfort , Margot Zahm , Cédric Cabau , Christophe Klopp , Carole Iampietro , Céline Roques , Olivier Bouchez , Adrien Castinel , Cécile Donnadieu , Hugues Parrinello , Charles Poncet , Elodie Belmonte , Véronique Gautier , Jean-Christophe Avarre , Remi Dugue , Rudhy Gustiano , Trần Thị Thúy Hà , Marc Campet , Kednapat Sriphairoj , Josiane Ribolli , Fernanda L de Almeida , Thomas Desvignes , John H Postlethwait , Christabel Floi Bucao , Julien Bobe , Amaury Herpin , Yann Guiguen

Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation.

Distributed and parallel databases

Avec: Ana Claudia Sima , Tarcisio Mendes de Farias , Maria Anisimova , Christophe Dessimoz , Erich Zbinden , Kurt Stockinger

The moulting arthropod: a complete genetic toolkit review.

Biological reviews of the Cambridge Philosophical Society

Avec: Giulia Campli , Olga Volovych , Kenneth Kim , Werner P Veldsman , Harriet B Drage , Idan Sheizaf , Sinéad Lynch , Ariel D Chipman , Allison C Daley , Robert M Waterhouse

OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data.

JCO clinical cancer informatics

Avec: Hayley M Dingerdissen , Frederic Bastian , K Vijay-Shanker , Amanda Bell , Nikhita Gogate , Samir Gupta , Evan Holmes , Robel Kahsay , Jonathon Keeney , Heather Kincaid , Charles Hadley King , David Liu , Daniel J Crichton , Raja Mazumder

Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection.

Molecular biology and evolution

Avec: Iakov I Davydov , Nicolas Salamin ,

Identifying gene function and module connections by the integration of multispecies expression compendia.

Genome research

Avec: Hao Li , Daria Rukina , Fabrice P A David , Terytty Yang Li , Chang-Myung Oh , Arwen W Gao , Elena Katsyuba , Maroun Bou Sleiman , Andrea Komljenovic , Qingyao Huang , Robert W Williams , Kristina Schoonjans , Stephan Morgenthaler , Johan Auwerx

First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes.

G3 (Bethesda, Md.)

Avec: Patrick Tran Van , Yoann Anselmetti , Jens Bast , Zoé Dumas , Nicolas Galtier , Kamil S Jaron , Koen Martens , Darren J Parker , Tanja Schwander , Paul Simion , Isa Schön

Haplotype divergence supports long-term asexuality in the oribatid mite

Proceedings of the National Academy of Sciences of the United States of America

Avec: Alexander Brandt , Patrick Tran Van , Christian Bluhm , Yoann Anselmetti , Zoé Dumas , Emeric Figuet , Clémentine M François , Nicolas Galtier , Bastian Heimburger , Kamil S Jaron , Marjorie Labédan , Mark Maraun , Darren J Parker , Ina Schaefer , Paul Simion , Stefan Scheu , Tanja Schwander , Jens Bast

Dynamics of sex-biased gene expression during development in the stick insect Timema californicum.

Heredity

Avec: Jelisaveta Djordjevic , Zoé Dumas , Tanja Schwander , Darren James Parker

Matreex: compact and interactive visualisation for scalable studies of large gene families.

Genome biology and evolution

Avec: Victor Rossier , Clement Train , Yannis Nevers , Christophe Dessimoz

X chromosomes show relaxed selection and complete somatic dosage compensation across Timema stick insect species.

Journal of evolutionary biology

Avec: Darren J Parker , Kamil S Jaron , Zoé Dumas , Tanja Schwander

Lessons learned to boost a bioinformatics knowledge base reusability, the Bgee experience.

GigaScience

Avec: Tarcisio Mendes de Farias , Julien Wollbrett , Frederic Bastian

Single-cell transcriptomics allows novel insights into aging and circadian processes.

Briefings in functional genomics

Avec: Sara S Fonseca Costa , Jürgen A Ripperger

Methods detecting rhythmic gene expression are biologically relevant only for strong signal.

PLoS computational biology

Avec: David Laloum ,

Sex-specific changes in gene expression in response to estrogen pollution around the onset of sex differentiation in grayling (Salmonidae).

BMC genomics

Avec: Oliver M Selmoni , Diane Maitre , Julien Roux , Laetitia G E Wilkins , Lucas Marques da Cunha , Etienne L M Vermeirssen , Susanne Knörr , Claus Wedekind

Cross-species functional modules link proteostasis to human normal aging.

PLoS computational biology

Avec: Andrea Komljenovic , Hao Li , Vincenzo Sorrentino , Zoltán Kutalik , Johan Auwerx ,

Convergent evolution of venom gland transcriptomes across Metazoa.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Giulia Zancolli , Maarten Reijnders , Robert M Waterhouse ,

Special Care Is Needed in Applying Phylogenetic Comparative Methods to Gene Trees with Speciation and Duplication Nodes.

Molecular biology and evolution

Avec: Tina Begum ,

Robust inference of positive selection on regulatory sequences in the human brain.

Science advances

Avec: Jialin Liu ,

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.

Nucleic acids research

Avec: Frederic B Bastian , Julien Roux , Anne Niknejad , Aurélie Comte , Sara S Fonseca Costa , Tarcisio Mendes de Farias , Sébastien Moretti , Gilles Parmentier , Valentine Rech de Laval , Marta Rosikiewicz , Julien Wollbrett , Amina Echchiki , Angélique Escoriza , Walid H Gharib , Mar Gonzales-Porta , Yohan Jarosz , Balazs Laurenczy , Philippe Moret , Emilie Person , Patrick Roelli , Komal Sanjeev , Mathieu Seppey ,

Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo.

BMC biology

Avec: Jialin Liu , Michael Frochaux , Vincent Gardeux , Bart Deplancke ,

Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level.

PLoS computational biology

Avec: David Laloum ,

Réseau de co-auteurs

Tanja Schwander 8 collaborations

Zoé Dumas 7 collaborations

Kamil S Jaron 6 collaborations

Jens Bast 6 collaborations

Darren J Parker 6 collaborations

Julien Roux 4 collaborations

Christophe Dessimoz 4 collaborations

Tarcisio Mendes de Farias 4 collaborations

Robert M Waterhouse 3 collaborations

Victor Rossier 3 collaborations

Jialin Liu 3 collaborations

Yoann Anselmetti 3 collaborations

Patrick Tran Van 3 collaborations

Paul Simion 3 collaborations

Nicolas Galtier 3 collaborations

Mathieu Seppey 2 collaborations

Emeric Figuet 2 collaborations

Clémentine M François 2 collaborations

Amina Echchiki 2 collaborations

Jerome Montfort 2 collaborations

Olivier Bouchez 2 collaborations

Céline Roques 2 collaborations

Carole Iampietro 2 collaborations

Adrien Castinel 2 collaborations

Cécile Donnadieu 2 collaborations

Thomas Desvignes 2 collaborations

Christabel Floi Bucao 2 collaborations

Elodie Jouanno 2 collaborations

Ming Wen 2 collaborations

Margot Zahm 2 collaborations

Cédric Cabau 2 collaborations

Christophe Klopp 2 collaborations

Julien Bobe 2 collaborations

John H Postlethwait 2 collaborations

Yann Guiguen 2 collaborations

Oliver M Selmoni 2 collaborations

Diane Maitre 2 collaborations

Laetitia G E Wilkins 2 collaborations

Lucas Marques da Cunha 2 collaborations

Etienne L M Vermeirssen 2 collaborations

Susanne Knörr 2 collaborations

Claus Wedekind 2 collaborations

Kirsten Jalvingh 2 collaborations

Ana Claudia Sima 2 collaborations

Erich Zbinden 2 collaborations

Maria Anisimova 2 collaborations

Kurt Stockinger 2 collaborations

Frederic Bastian 2 collaborations

Hao Li 2 collaborations

Andrea Komljenovic 2 collaborations

Johan Auwerx 2 collaborations

Julien Wollbrett 2 collaborations

Sara S Fonseca Costa 2 collaborations

David Laloum 2 collaborations

Panagiotis Ioannidis 1 collaboration

Brent C Emerson 1 collaboration

Camille Pitteloud 1 collaboration

Hermes E Escalona 1 collaboration

Duane D McKenna 1 collaboration

Bernhard Misof 1 collaboration

Seunggwan Shin 1 collaboration

Xin Zhou 1 collaboration

Nadir Alvarez 1 collaboration

Alex Warwick Vesztrocy 1 collaboration

Reuben W Nowell 1 collaboration

T Rhyker Ranallo-Benavidez 1 collaboration

Rebecca R Viales 1 collaboration

Pierre Khoueiry 1 collaboration

James P Reddington 1 collaboration

Charles Girardot 1 collaboration

Eileen E M Furlong 1 collaboration

Keith Hayward 1 collaboration

Marina Brasó-Vives 1 collaboration

Ferdinand Marlétaz 1 collaboration

Federica Mantica 1 collaboration

Rafael D Acemel 1 collaboration

José L Gómez-Skarmeta 1 collaboration

Diego A Hartasánchez 1 collaboration

Lorlane Le Targa 1 collaboration

Pierre Pontarotti 1 collaboration

Juan J Tena 1 collaboration

Ignacio Maeso 1 collaboration

Hector Escriva 1 collaboration

Manuel Irimia 1 collaboration

Elise Parey 1 collaboration

Alexandra Louis 1 collaboration

Jerome Lluch 1 collaboration

Sahar Mejri 1 collaboration

Ron Dirks 1 collaboration

Hans Jansen 1 collaboration

Christiaan Henkel 1 collaboration

Wei-Jen Chen 1 collaboration

Andrew W Thompson 1 collaboration

Ingo Braasch 1 collaboration

Guillaume Lecointre 1 collaboration

Camille Berthelot 1 collaboration

Hugues Roest Crollius 1 collaboration

Manuel Gil 1 collaboration

Heinz Stockinger 1 collaboration

Kirsten M Ellegaard 1 collaboration

Silvia Brochet 1 collaboration

German Bonilla-Rosso 1 collaboration

Olivier Emery 1 collaboration

Natasha Glover 1 collaboration

Noushin Hadadi 1 collaboration

Jan R van der Meer 1 collaboration

Vladimir Sentchilo 1 collaboration

Florian Tagini 1 collaboration

None None 1 collaboration

Philipp Engel 1 collaboration

Qiaowei Pan 1 collaboration

Hugues Parrinello 1 collaboration

Charles Poncet 1 collaboration

Elodie Belmonte 1 collaboration

Véronique Gautier 1 collaboration

Jean-Christophe Avarre 1 collaboration

Remi Dugue 1 collaboration

Rudhy Gustiano 1 collaboration

Trần Thị Thúy Hà 1 collaboration

Marc Campet 1 collaboration

Kednapat Sriphairoj 1 collaboration

Josiane Ribolli 1 collaboration

Fernanda L de Almeida 1 collaboration

Amaury Herpin 1 collaboration

Giulia Campli 1 collaboration

Olga Volovych 1 collaboration

Kenneth Kim 1 collaboration

Werner P Veldsman 1 collaboration

Harriet B Drage 1 collaboration

Idan Sheizaf 1 collaboration

Sinéad Lynch 1 collaboration

Ariel D Chipman 1 collaboration

Allison C Daley 1 collaboration

Hayley M Dingerdissen 1 collaboration

K Vijay-Shanker 1 collaboration

Amanda Bell 1 collaboration

Nikhita Gogate 1 collaboration

Samir Gupta 1 collaboration

Evan Holmes 1 collaboration

Robel Kahsay 1 collaboration

Jonathon Keeney 1 collaboration

Heather Kincaid 1 collaboration

Charles Hadley King 1 collaboration

David Liu 1 collaboration

Daniel J Crichton 1 collaboration

Raja Mazumder 1 collaboration

Iakov I Davydov 1 collaboration

Nicolas Salamin 1 collaboration

Daria Rukina 1 collaboration

Fabrice P A David 1 collaboration

Terytty Yang Li 1 collaboration

Chang-Myung Oh 1 collaboration

Arwen W Gao 1 collaboration

Elena Katsyuba 1 collaboration

Maroun Bou Sleiman 1 collaboration

Qingyao Huang 1 collaboration

Robert W Williams 1 collaboration

Kristina Schoonjans 1 collaboration

Stephan Morgenthaler 1 collaboration

Koen Martens 1 collaboration

Isa Schön 1 collaboration

Alexander Brandt 1 collaboration

Christian Bluhm 1 collaboration

Bastian Heimburger 1 collaboration

Marjorie Labédan 1 collaboration

Mark Maraun 1 collaboration

Ina Schaefer 1 collaboration

Stefan Scheu 1 collaboration

Jelisaveta Djordjevic 1 collaboration

Darren James Parker 1 collaboration

Clement Train 1 collaboration

Yannis Nevers 1 collaboration

Jürgen A Ripperger 1 collaboration

Vincenzo Sorrentino 1 collaboration

Zoltán Kutalik 1 collaboration

Giulia Zancolli 1 collaboration

Maarten Reijnders 1 collaboration

Tina Begum 1 collaboration

Frederic B Bastian 1 collaboration

Anne Niknejad 1 collaboration

Aurélie Comte 1 collaboration

Sébastien Moretti 1 collaboration

Gilles Parmentier 1 collaboration

Valentine Rech de Laval 1 collaboration

Marta Rosikiewicz 1 collaboration

Angélique Escoriza 1 collaboration

Walid H Gharib 1 collaboration

Mar Gonzales-Porta 1 collaboration

Yohan Jarosz 1 collaboration

Balazs Laurenczy 1 collaboration

Philippe Moret 1 collaboration

Emilie Person 1 collaboration

Patrick Roelli 1 collaboration

Komal Sanjeev 1 collaboration

Michael Frochaux 1 collaboration

Vincent Gardeux 1 collaboration

Bart Deplancke 1 collaboration