Helder V Ribeiro-Filho

Affiliations

Brazilian Center for Research in Energy and Materials (CNPEM), Brazilian Biosciences National Laboratory (LNBio) Campinas, SP 13083-100, Brazil.

Publications (15)

Structural analysis of TrkA mutations in patients with congenital insensitivity to pain reveals PLCγ as an analgesic drug target.

Science signaling

Avec: Beatriz C Moraes , Allan P Roldão , Elaine F Toniolo , Gustavo P B Carretero , Germán G Sgro , Fernanda A H Batista , Damian E Berardi , Victoria R S Oliveira , Rebeka Tomasin , Felipe M Vieceli , Dimitrius T Pramio , Alexandre B Cardoso , Ana C M Figueira , Shaker C Farah , Lakshmi A Devi , Camila S Dale , Paulo S L de Oliveira , Deborah Schechtman

The E2 glycoprotein holds key residues for Mayaro virus adaptation to the urban Aedes aegypti mosquito.

PLoS pathogens

Avec: Chelsea Cereghino , Ferdinand Roesch , Lucía Carrau , Alexandra Hardy , Annabelle Henrion-Lacritick , Cassandra Koh , Jeffrey M Marano , Tyler A Bates , Pallavi Rai , Christina Chuong , Shamima Akter , Thomas Vallet , Hervé Blanc , Truitt J Elliott , Anne M Brown , Pawel Michalak , Tanya LeRoith , Jesse D Bloom , Rafael Elias Marques , Maria-Carla Saleh , Marco Vignuzzi , James Weger-Lucarelli

Structural characterization and AlphaFold modeling of human T cell receptor recognition of NRAS cancer neoantigens.

bioRxiv : the preprint server for biology

Avec: Daichao Wu , Rui Yin , Guodong Chen , Melyssa Cheung , Paul F Robbins , Roy A Mariuzza , Brian G Pierce

Endothelium-dependent and endothelium-independent effects of 1-nitro-2-propylbenzene on rat aorta.

Fundamental & clinical pharmacology

Avec: Thiago Brasileiro Vasconcelos , Helder Veras Ribeiro-Filho , Emanuella Feitosa Carvalho , Teresinha Silva Brito , Saad Lahlou , Pedro Jorge Caldas Magalhães

Structural dynamics of SARS-CoV-2 nucleocapsid protein induced by RNA binding.

PLoS computational biology

Avec: Helder Veras Ribeiro-Filho , Gabriel Ernesto Jara , Fernanda Aparecida Heleno Batista , Gabriel Ravanhani Schleder , Celisa Caldana Costa Tonoli , Adriana Santos Soprano , Samuel Leite Guimarães , Antonio Carlos Borges , Alexandre Cassago , Marcio Chaim Bajgelman , Rafael Elias Marques , Daniela Barretto Barbosa Trivella , Kleber Gomes Franchini , Ana Carolina Migliorini Figueira , Celso Eduardo Benedetti , Paulo Sergio Lopes-de-Oliveira

Exploring the potential of structure-based deep learning approaches for T cell receptor design.

PLoS computational biology

Avec: Gabriel E Jara , João V S Guerra , Melyssa Cheung , Nathaniel R Felbinger , José G C Pereira , Brian G Pierce , Paulo S Lopes-de-Oliveira

Cryo-EM structure of the mature and infective Mayaro virus at 4.4 Å resolution reveals features of arthritogenic alphaviruses.

Nature communications

Avec: Lais D Coimbra , Alexandre Cassago , Rebeca P F Rocha , João Victor da Silva Guerra , Rafael de Felicio , Carolina Moretto Carnieli , Luiza Leme , Antonio Cláudio Padilha , Adriana F Paes Leme , Daniela B B Trivella , Rodrigo Villares Portugal , Paulo Sérgio Lopes-de-Oliveira , Rafael Elias Marques

Extracellular matrix stiffness regulates degradation of MST2 via SCF

Biochimica et biophysica acta. General subjects

Avec: Ana Paula Zen Petisco Fiore , Ana Maria Rodrigues , Helder Veras Ribeiro-Filho , Antonio Carlos Manucci , Pedro de Freitas Ribeiro , Mayara Carolinne Silva Botelho , Christine Vogel , Paulo Sergio Lopes-de-Oliveira , Michele Pagano , Alexandre Bruni-Cardoso

KVFinder-web: a web-based application for detecting and characterizing biomolecular cavities.

Nucleic acids research

Avec: João V S Guerra , José G C Pereira , Paulo S Lopes-de-Oliveira

SN-38, the active metabolite of irinotecan, inhibits the acute inflammatory response by targeting toll-like receptor 4.

Cancer chemotherapy and pharmacology

Avec: Deysi Viviana Tenazoa Wong , Helder Veras Ribeiro-Filho , Carlos Wagner Souza Wanderley , Caio Abner Vitorino Gonçalves Leite , Jonilson Berlink Lima , Alexia Nathália Brígido Assef , Aurilene Gomes Cajado , Gabriela Loiola Ponte Batista , Rafael Holanda González , Karla Oliveira Silva , Luis Philipi Carvalho Borges , Nylane Maria Nunes Alencar , Diego Veras Wilke , Thiago Mattar Cunha , Ana Carolina Migliorini Figueira , Fernando Queiroz Cunha , Roberto César Pereira Lima-Júnior

Proscan: a structure-based proline design web server.

Nucleic acids research

Avec: Nathaniel Felbinger , Brian G Pierce

Exploring the Potential of Structure-Based Deep Learning Approaches for T cell Receptor Design.

bioRxiv : the preprint server for biology

Avec: Gabriel E Jara , João V S Guerra , Melyssa Cheung , Nathaniel R Felbinger , José G C Pereira , Brian G Pierce , Paulo S Lopes-de-Oliveira

GQ-130, a novel analogue of thiazolidinedione, improves obesity-induced metabolic alterations in rats: Evidence for the involvement of PPARβ/δ pathway.

Clinical and experimental pharmacology & physiology

Avec: Odair Alves Silva , Helder Veras Ribeiro-Filho , Thayna Mendonca Avelino , Thais Helena Tittanegro , Ana Carolina Migliorini Figueira , Luiza Antas Rabelo , Ivan da Rocha Pitta , Saad Lahlou , Glória Pinto Duarte

pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science.

BMC bioinformatics

Avec: João Victor da Silva Guerra , Helder Veras Ribeiro-Filho , Gabriel Ernesto Jara , Leandro Oliveira Bortot , José Geraldo de Carvalho Pereira , Paulo Sérgio Lopes-de-Oliveira

TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning.

Nucleic acids research

Avec: Rui Yin , Valerie Lin , Ragul Gowthaman , Melyssa Cheung , Brian G Pierce

Réseau de co-auteurs

Helder Veras Ribeiro-Filho 6 collaborations

Brian G Pierce 5 collaborations

Melyssa Cheung 4 collaborations

Rafael Elias Marques 3 collaborations

Ana Carolina Migliorini Figueira 3 collaborations

João V S Guerra 3 collaborations

José G C Pereira 3 collaborations

Paulo S Lopes-de-Oliveira 3 collaborations

Rui Yin 2 collaborations

Saad Lahlou 2 collaborations

Gabriel Ernesto Jara 2 collaborations

Alexandre Cassago 2 collaborations

Paulo Sergio Lopes-de-Oliveira 2 collaborations

Gabriel E Jara 2 collaborations

Nathaniel R Felbinger 2 collaborations

João Victor da Silva Guerra 2 collaborations

Paulo Sérgio Lopes-de-Oliveira 2 collaborations

Beatriz C Moraes 1 collaboration

Allan P Roldão 1 collaboration

Elaine F Toniolo 1 collaboration

Gustavo P B Carretero 1 collaboration

Germán G Sgro 1 collaboration

Fernanda A H Batista 1 collaboration

Damian E Berardi 1 collaboration

Victoria R S Oliveira 1 collaboration

Rebeka Tomasin 1 collaboration

Felipe M Vieceli 1 collaboration

Dimitrius T Pramio 1 collaboration

Alexandre B Cardoso 1 collaboration

Ana C M Figueira 1 collaboration

Shaker C Farah 1 collaboration

Lakshmi A Devi 1 collaboration

Camila S Dale 1 collaboration

Paulo S L de Oliveira 1 collaboration

Deborah Schechtman 1 collaboration

Chelsea Cereghino 1 collaboration

Ferdinand Roesch 1 collaboration

Lucía Carrau 1 collaboration

Alexandra Hardy 1 collaboration

Annabelle Henrion-Lacritick 1 collaboration

Cassandra Koh 1 collaboration

Jeffrey M Marano 1 collaboration

Tyler A Bates 1 collaboration

Pallavi Rai 1 collaboration

Christina Chuong 1 collaboration

Shamima Akter 1 collaboration

Thomas Vallet 1 collaboration

Hervé Blanc 1 collaboration

Truitt J Elliott 1 collaboration

Anne M Brown 1 collaboration

Pawel Michalak 1 collaboration

Tanya LeRoith 1 collaboration

Jesse D Bloom 1 collaboration

Maria-Carla Saleh 1 collaboration

Marco Vignuzzi 1 collaboration

James Weger-Lucarelli 1 collaboration

Daichao Wu 1 collaboration

Guodong Chen 1 collaboration

Paul F Robbins 1 collaboration

Roy A Mariuzza 1 collaboration

Thiago Brasileiro Vasconcelos 1 collaboration

Emanuella Feitosa Carvalho 1 collaboration

Teresinha Silva Brito 1 collaboration

Pedro Jorge Caldas Magalhães 1 collaboration

Fernanda Aparecida Heleno Batista 1 collaboration

Gabriel Ravanhani Schleder 1 collaboration

Celisa Caldana Costa Tonoli 1 collaboration

Adriana Santos Soprano 1 collaboration

Samuel Leite Guimarães 1 collaboration

Antonio Carlos Borges 1 collaboration

Marcio Chaim Bajgelman 1 collaboration

Daniela Barretto Barbosa Trivella 1 collaboration

Kleber Gomes Franchini 1 collaboration

Celso Eduardo Benedetti 1 collaboration

Lais D Coimbra 1 collaboration

Rebeca P F Rocha 1 collaboration

Rafael de Felicio 1 collaboration

Carolina Moretto Carnieli 1 collaboration

Luiza Leme 1 collaboration

Antonio Cláudio Padilha 1 collaboration

Adriana F Paes Leme 1 collaboration

Daniela B B Trivella 1 collaboration

Rodrigo Villares Portugal 1 collaboration

Ana Paula Zen Petisco Fiore 1 collaboration

Ana Maria Rodrigues 1 collaboration

Antonio Carlos Manucci 1 collaboration

Pedro de Freitas Ribeiro 1 collaboration

Mayara Carolinne Silva Botelho 1 collaboration

Christine Vogel 1 collaboration

Michele Pagano 1 collaboration

Alexandre Bruni-Cardoso 1 collaboration

Deysi Viviana Tenazoa Wong 1 collaboration

Carlos Wagner Souza Wanderley 1 collaboration

Caio Abner Vitorino Gonçalves Leite 1 collaboration

Jonilson Berlink Lima 1 collaboration

Alexia Nathália Brígido Assef 1 collaboration

Aurilene Gomes Cajado 1 collaboration

Gabriela Loiola Ponte Batista 1 collaboration

Rafael Holanda González 1 collaboration

Karla Oliveira Silva 1 collaboration

Luis Philipi Carvalho Borges 1 collaboration

Nylane Maria Nunes Alencar 1 collaboration

Diego Veras Wilke 1 collaboration

Thiago Mattar Cunha 1 collaboration

Fernando Queiroz Cunha 1 collaboration

Roberto César Pereira Lima-Júnior 1 collaboration

Nathaniel Felbinger 1 collaboration

Odair Alves Silva 1 collaboration

Thayna Mendonca Avelino 1 collaboration

Thais Helena Tittanegro 1 collaboration

Luiza Antas Rabelo 1 collaboration

Ivan da Rocha Pitta 1 collaboration

Glória Pinto Duarte 1 collaboration

Leandro Oliveira Bortot 1 collaboration

José Geraldo de Carvalho Pereira 1 collaboration

Valerie Lin 1 collaboration

Ragul Gowthaman 1 collaboration