Gerhard J Herndl

Affiliations

1Department of Limnology and Bio-Oceanography, Center of Functional Ecology, University of Vienna, Vienna, Austria.
3Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Utrecht University, Den Burg, The Netherlands.

Publications (53)

Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensis sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria.

International journal of systematic and evolutionary microbiology

Avec: Barbara Bayer , Jana Vojvoda , Thomas Reinthaler , Carolina Reyes , Maria Pinto ,

Taurine Is a Major Carbon and Energy Source for Marine Prokaryotes in the North Atlantic Ocean off the Iberian Peninsula.

Microbial ecology

Avec: Elisabeth L Clifford , Marta M Varela , Daniele De Corte , Antonio Bode , Victor Ortiz , Eva Sintes

Seasonal Dynamics of Epiphytic Microbial Communities on Marine Macrophyte Surfaces.

Frontiers in microbiology

Avec: Marino Korlević , Marsej Markovski , Zihao Zhao , Mirjana Najdek

Microbial Consortiums of Putative Degraders of Low-Density Polyethylene-Associated Compounds in the Ocean.

mSystems

Avec: Maria Pinto , Zihao Zhao , Katja Klun , Eugen Libowitzky ,

Interplay between autotrophic and heterotrophic prokaryotic metabolism in the bathypelagic realm revealed by metatranscriptomic analyses.

Microbiome

Avec: Abhishek Srivastava , Daniele De Corte , Juan A L Garcia , Brandon K Swan , Ramunas Stepanauskas , Eva Sintes

Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean.

Microbiome

Avec: Pavla Debeljak , Barbara Bayer , Ying Sun , Ingrid Obernosterer

Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes.

Microbiology spectrum

Avec: Zihao Zhao , Federico Baltar ,

Influence of Salinity on the Extracellular Enzymatic Activities of Marine Pelagic Fungi.

Journal of fungi (Basel, Switzerland)

Avec: Katherine Salazar-Alekseyeva , Federico Baltar

Mesozooplankton taurine production and prokaryotic uptake in the northern Adriatic Sea.

Limnology and oceanography

Avec: Elisabeth L Clifford , Daniele De Corte , Chie Amano , Paolo Paliaga , Ingrid Ivančić , Victor Ortiz , Mirjana Najdek , Eva Sintes

Enzyme promiscuity in natural environments: alkaline phosphatase in the ocean.

The ISME journal

Avec: Abhishek Srivastava , Daniel E M Saavedra , Blair Thomson , Juan A L García , Zihao Zhao , Wayne M Patrick , Federico Baltar

Microbial Processing of Jellyfish Detritus in the Ocean.

Frontiers in microbiology

Avec: Tinkara Tinta , Zihao Zhao , Alvaro Escobar , Katja Klun , Barbara Bayer , Chie Amano , Luca Bamonti ,

Jellyfish-Associated Microbiome in the Marine Environment: Exploring Its Biotechnological Potential.

Marine drugs

Avec: Tinkara Tinta , Tjaša Kogovšek , Katja Klun , Alenka Malej , Valentina Turk

Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f.

Frontiers in microbiology

Avec: Michael L Chen , Eric D Becraft , Maria Pachiadaki , Julia M Brown , Jessica K Jarett , Josep M Gasol , Nikolai V Ravin , Duane P Moser , Takuro Nunoura , Tanja Woyke , Ramunas Stepanauskas

Phylogeny and Metabolic Potential of the Candidate Phylum SAR324.

Biology

Avec: Lukas Malfertheiner , Clara Martínez-Pérez , Zihao Zhao , Federico Baltar

The global distribution and climate resilience of marine heterotrophic prokaryotes.

Nature communications

Avec: Ryan F Heneghan , Jacinta Holloway-Brown , Josep M Gasol , Xosé Anxelu G Morán , Eric D Galbraith

Functional vertical connectivity of microbial communities in the ocean.

Science advances

Avec: Shi Chen , Zhang-Xian Xie , Ke-Qiang Yan , Jian-Wei Chen , Dong-Xu Li , Peng-Fei Wu , Ling Peng , Lin Lin , Chun-Ming Dong , Zihao Zhao , Guang-Yi Fan , Si-Qi Liu , Da-Zhi Wang

Limited carbon cycling due to high-pressure effects on the deep-sea microbiome.

Nature geoscience

Avec: Chie Amano , Zihao Zhao , Eva Sintes , Thomas Reinthaler , Julia Stefanschitz , Murat Kisadur , Motoo Utsumi ,

Characterization of membrane vesicles in

microLife

Avec: Eduard Fadeev , Cécile Carpaneto Bastos , Jennifer H Hennenfeind , Steven J Biller , Daniel Sher , Matthias Wietz ,

Nitrogen Isotope Fractionation During Archaeal Ammonia Oxidation: Coupled Estimates From Measurements of Residual Ammonium and Accumulated Nitrite.

Frontiers in microbiology

Avec: Maria Mooshammer , Ricardo J E Alves , Barbara Bayer , Michael Melcher , Michaela Stieglmeier , Lara Jochum , Simon K-M R Rittmann , Margarete Watzka , Christa Schleper , Wolfgang Wanek

Nitrifier adaptation to low energy flux controls inventory of reduced nitrogen in the dark ocean.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Yao Zhang , Wei Qin , Lei Hou , Emily J Zakem , Xianhui Wan , Zihao Zhao , Li Liu , Kristopher A Hunt , Nianzhi Jiao , Shuh-Ji Kao , Kai Tang , Xiabing Xie , Jiaming Shen , Yufang Li , Mingming Chen , Xiaofeng Dai , Chang Liu , Wenchao Deng , Minhan Dai , Anitra E Ingalls , David A Stahl ,

Niche Differentiation of Aerobic and Anaerobic Ammonia Oxidizers in a High Latitude Deep Oxygen Minimum Zone.

Frontiers in microbiology

Avec: Simone Muck , Daniele De Corte , Elisabeth L Clifford , Barbara Bayer , Eva Sintes

Differential Response of Cafeteria roenbergensis to Different Bacterial and Archaeal Prey Characteristics.

Microbial ecology

Avec: Daniele De Corte , Gabriela Paredes , Taichi Yokokawa , Eva Sintes ,

Putative degraders of low-density polyethylene-derived compounds are ubiquitous members of plastic-associated bacterial communities in the marine environment.

Environmental microbiology

Avec: Maria Pinto , Paula Polania Zenner , Teresa M Langer , Jesse Harrison , Meinhard Simon , Marta M Varela ,

Adapting an Ergosterol Extraction Method with Marine Yeasts for the Quantification of Oceanic Fungal Biomass.

Journal of fungi (Basel, Switzerland)

Avec: Katherine Salazar Alekseyeva , Barbara Mähnert , Franz Berthiller , Eva Breyer , Federico Baltar

Decoupling of respiration rates and abundance in marine prokaryoplankton.

Nature

Avec: Jacob H Munson-McGee , Melody R Lindsay , Eva Sintes , Julia M Brown , Timothy D'Angelo , Joe Brown , Laura C Lubelczyk , Paxton Tomko , David Emerson , Beth N Orcutt , Nicole J Poulton , Ramunas Stepanauskas

A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean.

Nature microbiology

Avec: Federico Baltar , Clara Martínez-Pérez , Chie Amano , Marion Vial , Semidán Robaina-Estévez , Thomas Reinthaler , Zihao Zhao , Ramiro Logares , Sergio E Morales , José M González

Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii.

BMC genomics

Avec: Neža Orel , Eduard Fadeev , Valentina Turk , Tinkara Tinta

Bacterial degradation of ctenophore

mSystems

Avec: Eduard Fadeev , Jennifer H Hennenfeind , Chie Amano , Zihao Zhao , Katja Klun , Tinkara Tinta

Release of cell-free enzymes by marine pelagic fungal strains.

Frontiers in fungal biology

Avec: Katherine Salazar-Alekseyeva , Federico Baltar

Linking extracellular enzymes to phylogeny indicates a predominantly particle-associated lifestyle of deep-sea prokaryotes.

Science advances

Avec: Zihao Zhao , Federico Baltar ,

The composition of bacterial communities associated with plastic biofilms differs between different polymers and stages of biofilm succession.

PloS one

Avec: Maria Pinto , Teresa M Langer , Thorsten Hüffer , Thilo Hofmann ,

Highly variable mRNA half-life time within marine bacterial taxa and functional genes.

Environmental microbiology

Avec: Paul A Steiner , Daniele De Corte , Javier Geijo , Catalina Mena , Taichi Yokokawa , Thomas Rattei , Eva Sintes

Uneven host cell growth causes lysogenic virus induction in the Baltic Sea.

PloS one

Avec: Nicole Köstner , Klaus Jürgens , Matthias Labrenz , Christian Winter

Towards Integrating Evolution, Metabolism, and Climate Change Studies of Marine Ecosystems.

Trends in ecology & evolution

Avec: Federico Baltar , Barbara Bayer , Nina Bednarsek , Stacy Deppeler , Ruben Escribano , Carolina E Gonzalez , Roberta L Hansman , Rajani Kanta Mishra , Mary Ann Moran , Daniel J Repeta , Carol Robinson , Eva Sintes , Christian Tamburini , Luis E Valentin ,

Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf.

Nature communications

Avec: Clara Martínez-Pérez , Chris Greening , Sean K Bay , Rachael J Lappan , Zihao Zhao , Daniele De Corte , Christina Hulbe , Christian Ohneiser , Craig Stevens , Blair Thomson , Ramunas Stepanauskas , José M González , Ramiro Logares , Sergio E Morales , Federico Baltar

Correcting a major error in assessing organic carbon pollution in natural waters.

Science advances

Avec: Nianzhi Jiao , Jihua Liu , Bethanie Edwards , Zongqing Lv , Ruanhong Cai , Yongqin Liu , Xilin Xiao , Jianning Wang , Fanglue Jiao , Rui Wang , Xingyu Huang , Bixi Guo , Jia Sun , Rui Zhang , Yao Zhang , Kai Tang , Qiang Zheng , Farooq Azam , John Batt , Wei-Jun Cai , Chen He , Paul Hill , David Hutchins , Julie LaRoche , Marlon Lewis , Hugh MacIntyre , Luca Polimene , Carol Robinson , Quan Shi , Curtis A Suttle , Helmuth Thomas , Douglas Wallace , Louis Legendre

Potential and expression of carbohydrate utilization by marine fungi in the global ocean.

Microbiome

Avec: Federico Baltar , Zihao Zhao ,

Selective DNA and Protein Isolation From Marine Macrophyte Surfaces.

Frontiers in microbiology

Avec: Marino Korlević , Marsej Markovski , Zihao Zhao , Mirjana Najdek

Prokaryotic Life in the Deep Ocean's Water Column.

Annual review of marine science

Avec: Barbara Bayer , Federico Baltar , Thomas Reinthaler

Jellyfish detritus supports niche partitioning and metabolic interactions among pelagic marine bacteria.

Microbiome

Avec: Tinkara Tinta , Zihao Zhao , Barbara Bayer ,

A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI).

Limnology and oceanography, methods

Avec: Chie Amano , Thomas Reinthaler , Eva Sintes , Marta M Varela , Julia Stefanschitz , Sho Kaneko , Yoshiyuki Nakano , Wolfgang Borchert , Motoo Utsumi

Ammonia-oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean.

Environmental microbiology

Avec: Barbara Bayer , Roberta L Hansman , Meriel J Bittner , Beatriz E Noriega-Ortega , Jutta Niggemann , Thorsten Dittmar ,

Viral Communities in the Global Deep Ocean Conveyor Belt Assessed by Targeted Viromics.

Frontiers in microbiology

Avec: Daniele De Corte , Joaquín Martínez Martínez , Mariana Silvia Cretoiu , Yoshihiro Takaki , Takuro Nunoura , Eva Sintes , Taichi Yokokawa

Seasonal dynamics of marine snow-associated and free-living demethylating bacterial communities in the coastal northern Adriatic Sea.

Environmental microbiology reports

Avec: Paul A Steiner , Eva Sintes , Rafel Simó , Daniele De Corte , Daniela Marić Pfannkuchen , Ingrid Ivančić , Mirjana Najdek ,

Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium.

mSystems

Avec: Barbara Bayer , Claus Pelikan , Meriel J Bittner , Thomas Reinthaler , Martin Könneke , Pierre Offre

Microbes mediating the sulfur cycle in the Atlantic Ocean and their link to chemolithoautotrophy.

Environmental microbiology

Avec: Daniele De Corte , Simone Muck , Johanna Tiroch , Catalina Mena , Eva Sintes

Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea.

Frontiers in microbiology

Avec: Paul A Steiner , Javier Geijo , Eduard Fadeev , Aleix Obiol , Eva Sintes , Thomas Rattei ,

The microbial carbon pump and climate change.

Nature reviews. Microbiology

Avec: Nianzhi Jiao , Tingwei Luo , Quanrui Chen , Zhao Zhao , Xilin Xiao , Jihua Liu , Zhimin Jian , Shucheng Xie , Helmuth Thomas , Ronald Benner , Micheal Gonsior , Feng Chen , Wei-Jun Cai , Carol Robinson

Temporal variation in the prokaryotic community of a nearshore marine environment.

Scientific reports

Avec: Marino Korlević , Marsej Markovski , Mirjana Najdek

Extracellular Enzymatic Activities of Oceanic Pelagic Fungal Strains and the Influence of Temperature.

Journal of fungi (Basel, Switzerland)

Avec: Katherine Salazar Alekseyeva , Federico Baltar

Global contribution of pelagic fungi to protein degradation in the ocean.

Microbiome

Avec: Eva Breyer , Zihao Zhao , Federico Baltar

Substrate uptake patterns shape niche separation in marine prokaryotic microbiome.

Science advances

Avec: Zihao Zhao , Chie Amano , Thomas Reinthaler , Mónica V Orellana ,

Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean.

Nature communications

Avec: Zihao Zhao , Chie Amano , Thomas Reinthaler , Federico Baltar , Mónica V Orellana ,

Réseau de co-auteurs

Zihao Zhao 19 collaborations

Federico Baltar 15 collaborations

Eva Sintes 14 collaborations

Barbara Bayer 10 collaborations

Daniele De Corte 10 collaborations

Thomas Reinthaler 8 collaborations

Chie Amano 8 collaborations

Mirjana Najdek 5 collaborations

Tinkara Tinta 5 collaborations

Maria Pinto 4 collaborations

Katja Klun 4 collaborations

Ramunas Stepanauskas 4 collaborations

Eduard Fadeev 4 collaborations

Elisabeth L Clifford 3 collaborations

Marta M Varela 3 collaborations

Marino Korlević 3 collaborations

Marsej Markovski 3 collaborations

Clara Martínez-Pérez 3 collaborations

Nianzhi Jiao 3 collaborations

Taichi Yokokawa 3 collaborations

Paul A Steiner 3 collaborations

Carol Robinson 3 collaborations

Victor Ortiz 2 collaborations

Abhishek Srivastava 2 collaborations

Katherine Salazar-Alekseyeva 2 collaborations

Ingrid Ivančić 2 collaborations

Blair Thomson 2 collaborations

Valentina Turk 2 collaborations

Julia M Brown 2 collaborations

Josep M Gasol 2 collaborations

Takuro Nunoura 2 collaborations

Julia Stefanschitz 2 collaborations

Motoo Utsumi 2 collaborations

Jennifer H Hennenfeind 2 collaborations

Yao Zhang 2 collaborations

Kai Tang 2 collaborations

Simone Muck 2 collaborations

Teresa M Langer 2 collaborations

Katherine Salazar Alekseyeva 2 collaborations

Eva Breyer 2 collaborations

Ramiro Logares 2 collaborations

Sergio E Morales 2 collaborations

José M González 2 collaborations

Javier Geijo 2 collaborations

Catalina Mena 2 collaborations

Thomas Rattei 2 collaborations

Roberta L Hansman 2 collaborations

Jihua Liu 2 collaborations

Xilin Xiao 2 collaborations

Wei-Jun Cai 2 collaborations

Helmuth Thomas 2 collaborations

Meriel J Bittner 2 collaborations

Mónica V Orellana 2 collaborations

Jana Vojvoda 1 collaboration

Carolina Reyes 1 collaboration

Antonio Bode 1 collaboration

Eugen Libowitzky 1 collaboration

Juan A L Garcia 1 collaboration

Brandon K Swan 1 collaboration

Pavla Debeljak 1 collaboration

Ying Sun 1 collaboration

Ingrid Obernosterer 1 collaboration

Paolo Paliaga 1 collaboration

Daniel E M Saavedra 1 collaboration

Juan A L García 1 collaboration

Wayne M Patrick 1 collaboration

Alvaro Escobar 1 collaboration

Luca Bamonti 1 collaboration

Tjaša Kogovšek 1 collaboration

Alenka Malej 1 collaboration

Michael L Chen 1 collaboration

Eric D Becraft 1 collaboration

Maria Pachiadaki 1 collaboration

Jessica K Jarett 1 collaboration

Nikolai V Ravin 1 collaboration

Duane P Moser 1 collaboration

Tanja Woyke 1 collaboration

Lukas Malfertheiner 1 collaboration

Ryan F Heneghan 1 collaboration

Jacinta Holloway-Brown 1 collaboration

Xosé Anxelu G Morán 1 collaboration

Eric D Galbraith 1 collaboration

Shi Chen 1 collaboration

Zhang-Xian Xie 1 collaboration

Ke-Qiang Yan 1 collaboration

Jian-Wei Chen 1 collaboration

Dong-Xu Li 1 collaboration

Peng-Fei Wu 1 collaboration

Ling Peng 1 collaboration

Lin Lin 1 collaboration

Chun-Ming Dong 1 collaboration

Guang-Yi Fan 1 collaboration

Si-Qi Liu 1 collaboration

Da-Zhi Wang 1 collaboration

Murat Kisadur 1 collaboration

Cécile Carpaneto Bastos 1 collaboration

Steven J Biller 1 collaboration

Daniel Sher 1 collaboration

Matthias Wietz 1 collaboration

Maria Mooshammer 1 collaboration

Ricardo J E Alves 1 collaboration

Michael Melcher 1 collaboration

Michaela Stieglmeier 1 collaboration

Lara Jochum 1 collaboration

Simon K-M R Rittmann 1 collaboration

Margarete Watzka 1 collaboration

Christa Schleper 1 collaboration

Wolfgang Wanek 1 collaboration

Wei Qin 1 collaboration

Lei Hou 1 collaboration

Emily J Zakem 1 collaboration

Xianhui Wan 1 collaboration

Li Liu 1 collaboration

Kristopher A Hunt 1 collaboration

Shuh-Ji Kao 1 collaboration

Xiabing Xie 1 collaboration

Jiaming Shen 1 collaboration

Yufang Li 1 collaboration

Mingming Chen 1 collaboration

Xiaofeng Dai 1 collaboration

Chang Liu 1 collaboration

Wenchao Deng 1 collaboration

Minhan Dai 1 collaboration

Anitra E Ingalls 1 collaboration

David A Stahl 1 collaboration

Gabriela Paredes 1 collaboration

Paula Polania Zenner 1 collaboration

Jesse Harrison 1 collaboration

Meinhard Simon 1 collaboration

Barbara Mähnert 1 collaboration

Franz Berthiller 1 collaboration

Jacob H Munson-McGee 1 collaboration

Melody R Lindsay 1 collaboration

Timothy D'Angelo 1 collaboration

Joe Brown 1 collaboration

Laura C Lubelczyk 1 collaboration

Paxton Tomko 1 collaboration

David Emerson 1 collaboration

Beth N Orcutt 1 collaboration

Nicole J Poulton 1 collaboration

Marion Vial 1 collaboration

Semidán Robaina-Estévez 1 collaboration

Neža Orel 1 collaboration

Thorsten Hüffer 1 collaboration

Thilo Hofmann 1 collaboration

Nicole Köstner 1 collaboration

Klaus Jürgens 1 collaboration

Matthias Labrenz 1 collaboration

Christian Winter 1 collaboration

Nina Bednarsek 1 collaboration

Stacy Deppeler 1 collaboration

Ruben Escribano 1 collaboration

Carolina E Gonzalez 1 collaboration

Rajani Kanta Mishra 1 collaboration

Mary Ann Moran 1 collaboration

Daniel J Repeta 1 collaboration

Christian Tamburini 1 collaboration

Luis E Valentin 1 collaboration

Chris Greening 1 collaboration

Sean K Bay 1 collaboration

Rachael J Lappan 1 collaboration

Christina Hulbe 1 collaboration

Christian Ohneiser 1 collaboration

Craig Stevens 1 collaboration

Bethanie Edwards 1 collaboration

Zongqing Lv 1 collaboration

Ruanhong Cai 1 collaboration

Yongqin Liu 1 collaboration

Jianning Wang 1 collaboration

Fanglue Jiao 1 collaboration

Rui Wang 1 collaboration

Xingyu Huang 1 collaboration

Bixi Guo 1 collaboration

Jia Sun 1 collaboration

Rui Zhang 1 collaboration

Qiang Zheng 1 collaboration

Farooq Azam 1 collaboration

John Batt 1 collaboration

Chen He 1 collaboration

Paul Hill 1 collaboration

David Hutchins 1 collaboration

Julie LaRoche 1 collaboration

Marlon Lewis 1 collaboration

Hugh MacIntyre 1 collaboration

Luca Polimene 1 collaboration

Quan Shi 1 collaboration

Curtis A Suttle 1 collaboration

Douglas Wallace 1 collaboration

Louis Legendre 1 collaboration

Sho Kaneko 1 collaboration

Yoshiyuki Nakano 1 collaboration

Wolfgang Borchert 1 collaboration

Beatriz E Noriega-Ortega 1 collaboration

Jutta Niggemann 1 collaboration

Thorsten Dittmar 1 collaboration

Joaquín Martínez Martínez 1 collaboration

Mariana Silvia Cretoiu 1 collaboration

Yoshihiro Takaki 1 collaboration

Rafel Simó 1 collaboration

Daniela Marić Pfannkuchen 1 collaboration

Claus Pelikan 1 collaboration

Martin Könneke 1 collaboration

Pierre Offre 1 collaboration

Johanna Tiroch 1 collaboration

Aleix Obiol 1 collaboration

Tingwei Luo 1 collaboration

Quanrui Chen 1 collaboration

Zhao Zhao 1 collaboration

Zhimin Jian 1 collaboration

Shucheng Xie 1 collaboration

Ronald Benner 1 collaboration

Micheal Gonsior 1 collaboration

Feng Chen 1 collaboration