Dylan Girodat

Affiliations

Theoretical Biology and Biophysics, Theoretical Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.
New Mexico Consortium, Los Alamos, NM 87544, USA.

Publications (10)

Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting.

Nucleic acids research

Avec: Wataru Nishima , Mikael Holm , Emily J Rundlet , Jose L Alejo , Kara Fischer , Scott C Blanchard , Karissa Y Sanbonmatsu

Construction of a highly selective and sensitive carbohydrate-detecting biosensor utilizing Computational Identification of Non-disruptive Conjugation sites (CINC) for flexible and streamlined biosensor design.

Biosensors & bioelectronics

Avec: Dustin D Smith , D Wade Abbott , Hans-Joachim Wieden

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein.

PLoS computational biology

Avec: Avik K Pati , Daniel S Terry , Scott C Blanchard , Karissa Y Sanbonmatsu

Loss of m

Cell reports

Avec: Artem Babaian , Katharina Rothe , Igor Minia , Sara Djondovic , Miha Milek , Sandra E Spencer Miko , Hans-Joachim Wieden , Markus Landthaler , Gregg B Morin , Dixie L Mager

Alternate conformational trajectories in ribosome translocation.

PLoS computational biology

Avec: Jose L Alejo , Michael J Hammerling , Jessica A Willi , Michael C Jewett , Aaron E Engelhart , Katarzyna P Adamala

Elongation Factor Tu's Nucleotide Binding Is Governed by a Thermodynamic Landscape Unique among Bacterial Translation Factors.

Journal of the American Chemical Society

Avec: Evan Mercier , Katherine E Gzyl , Hans-Joachim Wieden

Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Justin C Morse , Benjamin J Burnett , Mikael Holm , Roger B Altman , Karissa Y Sanbonmatsu , Hans-Joachim Wieden , Scott C Blanchard

Elongation Factor Tu Switch I Element is a Gate for Aminoacyl-tRNA Selection.

Journal of molecular biology

Avec: Scott C Blanchard , Hans-Joachim Wieden , Karissa Y Sanbonmatsu

Conformational changes of ribosomes during translation elongation resolved by molecular dynamics simulations.

Current opinion in structural biology

Avec: Anuradha Rai Chowdhury , Divya Sapkota ,

Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding.

Nature communications

Avec: Hans-Joachim Wieden , Scott C Blanchard , Karissa Y Sanbonmatsu

Réseau de co-auteurs

Hans-Joachim Wieden 6 collaborations

Scott C Blanchard 5 collaborations

Karissa Y Sanbonmatsu 5 collaborations

Mikael Holm 2 collaborations

Jose L Alejo 2 collaborations

Wataru Nishima 1 collaboration

Emily J Rundlet 1 collaboration

Kara Fischer 1 collaboration

Dustin D Smith 1 collaboration

D Wade Abbott 1 collaboration

Avik K Pati 1 collaboration

Daniel S Terry 1 collaboration

Artem Babaian 1 collaboration

Katharina Rothe 1 collaboration

Igor Minia 1 collaboration

Sara Djondovic 1 collaboration

Miha Milek 1 collaboration

Sandra E Spencer Miko 1 collaboration

Markus Landthaler 1 collaboration

Gregg B Morin 1 collaboration

Dixie L Mager 1 collaboration

Michael J Hammerling 1 collaboration

Jessica A Willi 1 collaboration

Michael C Jewett 1 collaboration

Aaron E Engelhart 1 collaboration

Katarzyna P Adamala 1 collaboration

Evan Mercier 1 collaboration

Katherine E Gzyl 1 collaboration

Justin C Morse 1 collaboration

Benjamin J Burnett 1 collaboration

Roger B Altman 1 collaboration

Anuradha Rai Chowdhury 1 collaboration

Divya Sapkota 1 collaboration