Didier Debroas

Affiliations

CNRS, Laboratoire Microorganismes: Génome et Environnement, Université Clermont Auvergne, Clermont-Ferrand, France.

ORCID: https://orcid.org/0000-0002-9915-1268

Publications (21)

FreshOmics: A manually curated and standardized -omics database for investigating freshwater microbiomes.

Molecular ecology resources

Avec: Corinne Biderre-Petit , Jean-Christophe Charvy , Gisèle Bronner , Marina Chauvet , Hélène Gardon , Claire Hennequin , Isabelle Jouan-Dufournel , Anne Moné , Arthur Monjot , Viviane Ravet , Agnès Vellet , Cécile Lepère

A pan-genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin.

Molecular ecology resources

Avec: Corinne Biderre-Petit , Damien Courtine , Claire Hennequin , Pierre E Galand , Stefan Bertilsson , Arthur Monjot , Cécile Lepère , Anna-Maria Divne , Corentin Hochart

Assessing the response of micro-eukaryotic diversity to the Great Acceleration using lake sedimentary DNA.

Nature communications

Avec: François Keck , Laurent Millet , David Etienne , Didier Galop , Damien Rius , Isabelle Domaizon

New insights into the pelagic microorganisms involved in the methane cycle in the meromictic Lake Pavin through metagenomics.

FEMS microbiology ecology

Avec: Corinne Biderre-Petit , Najwa Taib , Hélène Gardon , Corentin Hochart ,

Temporal variations of Microsporidia diversity and discovery of new host-parasite interactions in a lake ecosystem.

Environmental microbiology

Avec: Marina Chauvet , Anne Moné , Aurore Dubuffet , Cécile Lepère

Viruses as key reservoirs of antibiotic resistance genes in the environment.

The ISME journal

Avec: Cléa Siguret

Reconstruction of plasmids by shotgun sequencing from environmental DNA: which bioinformatic workflow?

Briefings in bioinformatics

Avec: Cécile Hilpert , Geneviève Bricheux ,

A phylogenetic framework to investigate the microsporidian communities through metabarcoding and its application to lake ecosystems.

Environmental microbiology

Avec: Aurore Dubuffet , Marina Chauvet , Anne Moné , Cécile Lepère

Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait-based approach.

Environmental microbiology

Avec: Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne Da Silva , Jean-Marc Aury , Frederick Gavory , Anne Moné , Agnès Vellet , Ivan Wawrzyniak , Jonathan Colombet , Hermine Billard , Cécile Lepère

A Pediococcus strain to rescue honeybees by decreasing Nosema ceranae- and pesticide-induced adverse effects.

Pesticide biochemistry and physiology

Avec: Elodie Peghaire , Anne Moné , Frédéric Delbac , Frédérique Chaucheyras-Durand , Hicham El Alaoui

Honeybee gut microbiota dysbiosis in pesticide/parasite co-exposures is mainly induced by Nosema ceranae.

Journal of invertebrate pathology

Avec: Laurianne Paris , Elodie Peghaire , Anne Moné , Marie Diogon , Frédéric Delbac , Hicham El Alaoui

Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean.

MicrobiologyOpen

Avec: Olivier Pereira , Corentin Hochart , Jean Christophe Auguet , Pierre E Galand

Monitoring of enterovirus diversity in wastewater by ultra-deep sequencing: An effective complementary tool for clinical enterovirus surveillance.

Water research

Avec: Maxime Bisseux , Audrey Mirand , Christine Archimbaud , Hélène Peigue-Lafeuille , Jean-Luc Bailly , Cécile Henquell

Transient Dynamics of Archaea and Bacteria in Sediments and Brine Across a Salinity Gradient in a Solar Saltern of Goa, India.

Frontiers in microbiology

Avec: Kabilan Mani , Najwa Taib , Mylène Hugoni , Gisele Bronner , Judith M Bragança ,

Seasonal microbial dynamics in the ocean inferred from assembled and unassembled data: a view on the unknown biosphere.

ISME communications

Avec: Corentin Hochart , Pierre E Galand

Temporal covariation of epibacterial community and surface metabolome in the Mediterranean seaweed holobiont Taonia atomaria.

Environmental microbiology

Avec: Benoît Paix , Ahlem Othmani , Gérald Culioli , Jean-François Briand

Diversity, spatial distribution and activity of fungi in freshwater ecosystems.

PeerJ

Avec: Cécile Lepère , Isabelle Domaizon , Jean-Francois Humbert , Ludwig Jardillier , Mylène Hugoni ,

Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems.

Environment international

Avec: David Singer , Christophe V W Seppey , Guillaume Lentendu , Micah Dunthorn , David Bass , Lassâad Belbahri , Quentin Blandenier , G Arjen de Groot , Colomban de Vargas , Isabelle Domaizon , Clément Duckert , Irina Izaguirre , Isabelle Koenig , Gabriela Mataloni , M Romina Schiaffino , Edward A D Mitchell , Stefan Geisen , Enrique Lara

Seasonality of archaeal proteorhodopsin and associated Marine Group IIb ecotypes (Ca. Poseidoniales) in the North Western Mediterranean Sea.

The ISME journal

Avec: Olivier Pereira , Corentin Hochart , Dominique Boeuf , Jean Christophe Auguet , Pierre E Galand

Plasmidome analysis of a hospital effluent biofilm: Status of antibiotic resistance.

Plasmid

Avec: Claire Hennequin , Christiane Forestier , Ousmane Traore , Geneviève Bricheux

Metabolic activities of marine ammonia-oxidizing archaea orchestrated by quorum sensing.

mLife

Avec: Olivier Pereira , Wei Qin , Pierre E Galand , Raphael Lami , Corentin Hochart , Yangkai Zhou , Jin Zhou , Chuanlun Zhang

Réseau de co-auteurs

Anne Moné 6 collaborations

Cécile Lepère 6 collaborations

Corentin Hochart 6 collaborations

Pierre E Galand 5 collaborations

Corinne Biderre-Petit 3 collaborations

Marina Chauvet 3 collaborations

Claire Hennequin 3 collaborations

Arthur Monjot 3 collaborations

Isabelle Domaizon 3 collaborations

Olivier Pereira 3 collaborations

Gisèle Bronner 2 collaborations

Hélène Gardon 2 collaborations

Agnès Vellet 2 collaborations

Damien Courtine 2 collaborations

Najwa Taib 2 collaborations

Aurore Dubuffet 2 collaborations

Geneviève Bricheux 2 collaborations

Elodie Peghaire 2 collaborations

Frédéric Delbac 2 collaborations

Hicham El Alaoui 2 collaborations

Jean Christophe Auguet 2 collaborations

Mylène Hugoni 2 collaborations

Jean-Christophe Charvy 1 collaboration

Isabelle Jouan-Dufournel 1 collaboration

Viviane Ravet 1 collaboration

Stefan Bertilsson 1 collaboration

Anna-Maria Divne 1 collaboration

François Keck 1 collaboration

Laurent Millet 1 collaboration

David Etienne 1 collaboration

Didier Galop 1 collaboration

Damien Rius 1 collaboration

Cléa Siguret 1 collaboration

Cécile Hilpert 1 collaboration

Corinne Cruaud 1 collaboration

Corinne Da Silva 1 collaboration

Jean-Marc Aury 1 collaboration

Frederick Gavory 1 collaboration

Ivan Wawrzyniak 1 collaboration

Jonathan Colombet 1 collaboration

Hermine Billard 1 collaboration

Frédérique Chaucheyras-Durand 1 collaboration

Laurianne Paris 1 collaboration

Marie Diogon 1 collaboration

Maxime Bisseux 1 collaboration

Audrey Mirand 1 collaboration

Christine Archimbaud 1 collaboration

Hélène Peigue-Lafeuille 1 collaboration

Jean-Luc Bailly 1 collaboration

Cécile Henquell 1 collaboration

Kabilan Mani 1 collaboration

Gisele Bronner 1 collaboration

Judith M Bragança 1 collaboration

Benoît Paix 1 collaboration

Ahlem Othmani 1 collaboration

Gérald Culioli 1 collaboration

Jean-François Briand 1 collaboration

Jean-Francois Humbert 1 collaboration

Ludwig Jardillier 1 collaboration

David Singer 1 collaboration

Christophe V W Seppey 1 collaboration

Guillaume Lentendu 1 collaboration

Micah Dunthorn 1 collaboration

David Bass 1 collaboration

Lassâad Belbahri 1 collaboration

Quentin Blandenier 1 collaboration

G Arjen de Groot 1 collaboration

Colomban de Vargas 1 collaboration

Clément Duckert 1 collaboration

Irina Izaguirre 1 collaboration

Isabelle Koenig 1 collaboration

Gabriela Mataloni 1 collaboration

M Romina Schiaffino 1 collaboration

Edward A D Mitchell 1 collaboration

Stefan Geisen 1 collaboration

Enrique Lara 1 collaboration

Dominique Boeuf 1 collaboration

Christiane Forestier 1 collaboration

Ousmane Traore 1 collaboration

Wei Qin 1 collaboration

Raphael Lami 1 collaboration

Yangkai Zhou 1 collaboration

Jin Zhou 1 collaboration

Chuanlun Zhang 1 collaboration