Carolina Tropini

Affiliations

Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada. carolina.tropini@ubc.ca.
School of Biomedical Engineering, University of British Columbia, Vancouver, Canada. carolina.tropini@ubc.ca.
Humans and the Microbiome Program, Canadian Institute for Advanced Research (CIFAR), Toronto, Canada. carolina.tropini@ubc.ca.

Publications (18)

Gut commensal Enterocloster species host inoviruses that are secreted in vitro and in vivo.

Microbiome

Avec: Juan C Burckhardt , Derrick H Y Chong , Nicola Pett ,

T4 Bacteriophage and E. coli Interaction in the Murine Intestine: A Prototypical Model for Studying Host-Bacteriophage Dynamics In Vivo.

Journal of visualized experiments : JoVE

Avec: Nicola Pett , Michael Hunter , Natalia A Carranza García , Jung Hee Seo , Samuel R Collins , Forest Rohwer , Lisa C Osborne ,

The hygiene hypothesis, the COVID pandemic, and consequences for the human microbiome.

Proceedings of the National Academy of Sciences of the United States of America

Avec: B Brett Finlay , Katherine R Amato , Meghan Azad , Martin J Blaser , Thomas C G Bosch , Hiutung Chu , Maria Gloria Dominguez-Bello , Stanislav Dusko Ehrlich , Eran Elinav , Naama Geva-Zatorsky , Philippe Gros , Karen Guillemin , Frédéric Keck , Tal Korem , Margaret J McFall-Ngai , Melissa K Melby , Mark Nichter , Sven Pettersson , Hendrik Poinar , Tobias Rees , Liping Zhao , Tamara Giles-Vernick

Cause or effect? The spatial organization of pathogens and the gut microbiota in disease.

Microbes and infection

Avec: Jen Nguyen , Deanna M Pepin ,

Microbial endocrinology: the mechanisms by which the microbiota influences host sex steroids.

Trends in microbiology

Avec: Sophie Cotton , Charlotte A Clayton ,

The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut.

mBio

Avec: Erin Oi-Yan Wong , Emma Joan Elizabeth Brownlie , Katharine Michelle Ng , Sornnujah Kathirgamanathan , Feiqiao Brian Yu , Bryan D Merrill , Kerwyn Casey Huang , Alberto Martin , William Wiley Navarre

Single-strain behavior predicts responses to environmental pH and osmolality in the gut microbiota.

mBio

Avec: Katharine M Ng , Sagar Pannu , Sijie Liu , Juan C Burckhardt , Thad Hughes , Will Van Treuren , Jen Nguyen , Kisa Naqvi , Bachviet Nguyen , Charlotte A Clayton , Deanna M Pepin , Samuel R Collins ,

Time to rethink academic publishing: the peer reviewer crisis.

mBio

Avec: B Brett Finlay , Mark Nichter , Melissa K Melby , Jessica L Metcalf , Maria Gloria Dominguez-Bello , Liping Zhao , Margaret J McFall-Ngai , Naama Geva-Zatorsky , Katherine R Amato , Eduardo A Undurraga , Hendrik N Poinar , Jack A Gilbert

Dysbiosis-Induced Secondary Bile Acid Deficiency Promotes Intestinal Inflammation.

Cell host & microbe

Avec: Sidhartha R Sinha , Yeneneh Haileselassie , Linh P Nguyen , Min Wang , Laren S Becker , Davis Sim , Karolin Jarr , Estelle T Spear , Gulshan Singh , Hong Namkoong , Kyle Bittinger , Michael A Fischbach , Justin L Sonnenburg , Aida Habtezion

Visualization of Gut Microbiota-host Interactions via Fluorescence In Situ Hybridization, Lectin Staining, and Imaging.

Journal of visualized experiments : JoVE

Avec: Katharine M Ng ,

The potential importance of the built-environment microbiome and its impact on human health.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Thomas C G Bosch , Mark Wigley , Beatriz Colomina , Brendan Bohannan , Forrest Meggers , Katherine R Amato , Meghan B Azad , Martin J Blaser , Kate Brown , Maria Gloria Dominguez-Bello , Stanislav Dusko Ehrlich , Eran Elinav , B Brett Finlay , Kate Geddie , Naama Geva-Zatorsky , Tamara Giles-Vernick , Philippe Gros , Karen Guillemin , Louis-Patrick Haraoui , Elizabeth Johnson , Frédéric Keck , Jamie Lorimer , Margaret J McFall-Ngai , Mark Nichter , Sven Pettersson , Hendrik Poinar , Tobias Rees , Eduardo A Undurraga , Liping Zhao , Melissa K Melby

PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.

mSphere

Avec: Hans Ghezzi , Yiyun M Fan , Katharine M Ng , Juan C Burckhardt , Deanna M Pepin , Xuan Lin , Ryan M Ziels ,

Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.

Cell host & microbe

Avec: Katharine Michelle Ng , Andrés Aranda-Díaz , Matthew Ryan Frankel , William Van Treuren , Colleen T O'Loughlin , Bryan Douglas Merrill , Feiqiao Brian Yu , Kali M Pruss , Rita Almeida Oliveira , Steven Kyle Higginbottom , Norma F Neff , Michael Andrew Fischbach , Karina Bivar Xavier , Justin Laine Sonnenburg , Kerwyn Casey Huang

How the Physical Environment Shapes the Microbiota.

mSystems

Avec:

A bacterial record collection.

Cell host & microbe

Avec:

The gut microbiota and its biogeography.

Nature reviews. Microbiology

Avec: Giselle McCallum ,

Inoviruses.

Current biology : CB

Avec: Juan C Burckhardt ,

High accuracy meets high throughput for near full-length 16S ribosomal RNA amplicon sequencing on the Nanopore platform.

PNAS nexus

Avec: Xuan Lin , Katherine Waring , Hans Ghezzi , John Tyson , Ryan M Ziels

Réseau de co-auteurs

Juan C Burckhardt 4 collaborations

B Brett Finlay 3 collaborations

Katherine R Amato 3 collaborations

Maria Gloria Dominguez-Bello 3 collaborations

Naama Geva-Zatorsky 3 collaborations

Margaret J McFall-Ngai 3 collaborations

Melissa K Melby 3 collaborations

Mark Nichter 3 collaborations

Liping Zhao 3 collaborations

Deanna M Pepin 3 collaborations

Katharine M Ng 3 collaborations

Nicola Pett 2 collaborations

Samuel R Collins 2 collaborations

Martin J Blaser 2 collaborations

Thomas C G Bosch 2 collaborations

Stanislav Dusko Ehrlich 2 collaborations

Eran Elinav 2 collaborations

Philippe Gros 2 collaborations

Karen Guillemin 2 collaborations

Frédéric Keck 2 collaborations

Sven Pettersson 2 collaborations

Hendrik Poinar 2 collaborations

Tobias Rees 2 collaborations

Tamara Giles-Vernick 2 collaborations

Jen Nguyen 2 collaborations

Charlotte A Clayton 2 collaborations

Katharine Michelle Ng 2 collaborations

Feiqiao Brian Yu 2 collaborations

Kerwyn Casey Huang 2 collaborations

Eduardo A Undurraga 2 collaborations

Hans Ghezzi 2 collaborations

Xuan Lin 2 collaborations

Ryan M Ziels 2 collaborations

Derrick H Y Chong 1 collaboration

Michael Hunter 1 collaboration

Natalia A Carranza García 1 collaboration

Jung Hee Seo 1 collaboration

Forest Rohwer 1 collaboration

Lisa C Osborne 1 collaboration

Meghan Azad 1 collaboration

Hiutung Chu 1 collaboration

Tal Korem 1 collaboration

Sophie Cotton 1 collaboration

Erin Oi-Yan Wong 1 collaboration

Emma Joan Elizabeth Brownlie 1 collaboration

Sornnujah Kathirgamanathan 1 collaboration

Bryan D Merrill 1 collaboration

Alberto Martin 1 collaboration

William Wiley Navarre 1 collaboration

Sagar Pannu 1 collaboration

Sijie Liu 1 collaboration

Thad Hughes 1 collaboration

Will Van Treuren 1 collaboration

Kisa Naqvi 1 collaboration

Bachviet Nguyen 1 collaboration

Jessica L Metcalf 1 collaboration

Hendrik N Poinar 1 collaboration

Jack A Gilbert 1 collaboration

Sidhartha R Sinha 1 collaboration

Yeneneh Haileselassie 1 collaboration

Linh P Nguyen 1 collaboration

Min Wang 1 collaboration

Laren S Becker 1 collaboration

Davis Sim 1 collaboration

Karolin Jarr 1 collaboration

Estelle T Spear 1 collaboration

Gulshan Singh 1 collaboration

Hong Namkoong 1 collaboration

Kyle Bittinger 1 collaboration

Michael A Fischbach 1 collaboration

Justin L Sonnenburg 1 collaboration

Aida Habtezion 1 collaboration

Mark Wigley 1 collaboration

Beatriz Colomina 1 collaboration

Brendan Bohannan 1 collaboration

Forrest Meggers 1 collaboration

Meghan B Azad 1 collaboration

Kate Brown 1 collaboration

Kate Geddie 1 collaboration

Louis-Patrick Haraoui 1 collaboration

Elizabeth Johnson 1 collaboration

Jamie Lorimer 1 collaboration

Yiyun M Fan 1 collaboration

Andrés Aranda-Díaz 1 collaboration

Matthew Ryan Frankel 1 collaboration

William Van Treuren 1 collaboration

Colleen T O'Loughlin 1 collaboration

Bryan Douglas Merrill 1 collaboration

Kali M Pruss 1 collaboration

Rita Almeida Oliveira 1 collaboration

Steven Kyle Higginbottom 1 collaboration

Norma F Neff 1 collaboration

Michael Andrew Fischbach 1 collaboration

Karina Bivar Xavier 1 collaboration

Justin Laine Sonnenburg 1 collaboration

Giselle McCallum 1 collaboration

Katherine Waring 1 collaboration

John Tyson 1 collaboration