Babak Behsaz

Publications (13)

Utilizing multimodal AI to improve genetic analyses of cardiovascular traits.

medRxiv : the preprint server for health sciences

Avec: Yuchen Zhou , Justin Cosentino , Taedong Yun , Mahantesh I Biradar , Jacqueline Shreibati , Dongbing Lai , Tae-Hwi Schwantes-An , Robert Luben , Zachary McCaw , Jorgen Engmann , Rui Providencia , Amand Floriaan Schmidt , Patricia Munroe , Howard Yang , Andrew Carroll , Anthony P Khawaja , Cory Y McLean , Farhad Hormozdiari

Unsupervised representation learning on high-dimensional clinical data improves genomic discovery and prediction.

Nature genetics

Avec: Taedong Yun , Justin Cosentino , Zachary R McCaw , Davin Hill , Robert Luben , Dongbing Lai , John Bates , Howard Yang , Tae-Hwi Schwantes-An , Yuchen Zhou , Anthony P Khawaja , Andrew Carroll , Brian D Hobbs , Michael H Cho , Cory Y McLean , Farhad Hormozdiari

De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments.

Cell systems

Avec: Bahar Behsaz , Hosein Mohimani , Alexey Gurevich , Andrey Prjibelski , Mark Fisher , Fernando Vargas , Larry Smarr , Pieter C Dorrestein , Joshua S Mylne , Pavel A Pevzner

Inference of chronic obstructive pulmonary disease with deep learning on raw spirograms identifies new genetic loci and improves risk models.

Nature genetics

Avec: Justin Cosentino , Babak Alipanahi , Zachary R McCaw , Davin Hill , Tae-Hwi Schwantes-An , Dongbing Lai , Andrew Carroll , Brian D Hobbs , Michael H Cho , Cory Y McLean , Farhad Hormozdiari

metaFlye: scalable long-read metagenome assembly using repeat graphs.

Nature methods

Avec: Mikhail Kolmogorov , Derek M Bickhart , Bahar Behsaz , Alexey Gurevich , Mikhail Rayko , Sung Bong Shin , Kristen Kuhn , Jeffrey Yuan , Evgeny Polevikov , Timothy P L Smith , Pavel A Pevzner

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.

Nature communications

Avec: Bahar Behsaz , Edna Bode , Alexey Gurevich , Yan-Ni Shi , Florian Grundmann , Deepa Acharya , Andrés Mauricio Caraballo-Rodríguez , Amina Bouslimani , Morgan Panitchpakdi , Annabell Linck , Changhui Guan , Julia Oh , Pieter C Dorrestein , Helge B Bode , Pavel A Pevzner , Hosein Mohimani

Fast mass spectrometry search and clustering of untargeted metabolomics data.

Nature biotechnology

Avec: Mihir Mongia , Tyler M Yasaka , Yudong Liu , Mustafa Guler , Liang Lu , Aditya Bhagwat , Bahar Behsaz , Mingxun Wang , Pieter C Dorrestein , Hosein Mohimani

Large-scale machine-learning-based phenotyping significantly improves genomic discovery for optic nerve head morphology.

American journal of human genetics

Avec: Babak Alipanahi , Farhad Hormozdiari , Justin Cosentino , Zachary R McCaw , Emanuel Schorsch , D Sculley , Elizabeth H Dorfman , Paul J Foster , Lily H Peng , Sonia Phene , Naama Hammel , Andrew Carroll , Anthony P Khawaja , Cory Y McLean

HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search.

Nature communications

Avec: Yi-Yuan Lee , Mustafa Guler , Desnor N Chigumba , Shen Wang , Neel Mittal , Cameron Miller , Benjamin Krummenacher , Haodong Liu , Liu Cao , Aditya Kannan , Keshav Narayan , Samuel T Slocum , Bryan L Roth , Alexey Gurevich , Bahar Behsaz , Roland D Kersten , Hosein Mohimani

Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS.

Nature communications

Avec: Donghui Yan , Muqing Zhou , Abhinav Adduri , Yihao Zhuang , Mustafa Guler , Sitong Liu , Hyonyoung Shin , Torin Kovach , Gloria Oh , Xiao Liu , Yuting Deng , Xiaofeng Wang , Liu Cao , David H Sherman , Pamela J Schultz , Roland D Kersten , Jason A Clement , Ashootosh Tripathi , Bahar Behsaz , Hosein Mohimani

Unsupervised representation learning improves genomic discovery and risk prediction for respiratory and circulatory functions and diseases.

medRxiv : the preprint server for health sciences

Avec: Taedong Yun , Justin Cosentino , Zachary R McCaw , Davin Hill , Robert Luben , Dongbing Lai , John Bates , Howard Yang , Tae-Hwi Schwantes-An , Yuchen Zhou , Anthony P Khawaja , Andrew Carroll , Brian D Hobbs , Michael H Cho , Cory Y McLean , Farhad Hormozdiari

AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes.

Bioinformatics (Oxford, England)

Avec: Mihir Mongia , Romel Baral , Abhinav Adduri , Donghui Yan , Yudong Liu , Yuying Bian , Paul Kim , Bahar Behsaz , Hosein Mohimani

Predicting cardiovascular disease risk using photoplethysmography and deep learning.

PLOS global public health

Avec: Wei-Hung Weng , Sebastien Baur , Mayank Daswani , Christina Chen , Lauren Harrell , Sujay Kakarmath , Mariam Jabara , Cory Y McLean , Yossi Matias , Greg S Corrado , Shravya Shetty , Shruthi Prabhakara , Yun Liu , Goodarz Danaei , Diego Ardila

Réseau de co-auteurs

Bahar Behsaz 7 collaborations

Cory Y McLean 6 collaborations

Hosein Mohimani 6 collaborations

Justin Cosentino 5 collaborations

Andrew Carroll 5 collaborations

Farhad Hormozdiari 5 collaborations

Dongbing Lai 4 collaborations

Tae-Hwi Schwantes-An 4 collaborations

Anthony P Khawaja 4 collaborations

Zachary R McCaw 4 collaborations

Alexey Gurevich 4 collaborations

Yuchen Zhou 3 collaborations

Taedong Yun 3 collaborations

Robert Luben 3 collaborations

Howard Yang 3 collaborations

Davin Hill 3 collaborations

Brian D Hobbs 3 collaborations

Michael H Cho 3 collaborations

Pieter C Dorrestein 3 collaborations

Pavel A Pevzner 3 collaborations

Mustafa Guler 3 collaborations

John Bates 2 collaborations

Babak Alipanahi 2 collaborations

Mihir Mongia 2 collaborations

Yudong Liu 2 collaborations

Liu Cao 2 collaborations

Roland D Kersten 2 collaborations

Donghui Yan 2 collaborations

Abhinav Adduri 2 collaborations

Mahantesh I Biradar 1 collaboration

Jacqueline Shreibati 1 collaboration

Zachary McCaw 1 collaboration

Jorgen Engmann 1 collaboration

Rui Providencia 1 collaboration

Amand Floriaan Schmidt 1 collaboration

Patricia Munroe 1 collaboration

Andrey Prjibelski 1 collaboration

Mark Fisher 1 collaboration

Fernando Vargas 1 collaboration

Larry Smarr 1 collaboration

Joshua S Mylne 1 collaboration

Mikhail Kolmogorov 1 collaboration

Derek M Bickhart 1 collaboration

Mikhail Rayko 1 collaboration

Sung Bong Shin 1 collaboration

Kristen Kuhn 1 collaboration

Jeffrey Yuan 1 collaboration

Evgeny Polevikov 1 collaboration

Timothy P L Smith 1 collaboration

Edna Bode 1 collaboration

Yan-Ni Shi 1 collaboration

Florian Grundmann 1 collaboration

Deepa Acharya 1 collaboration

Andrés Mauricio Caraballo-Rodríguez 1 collaboration

Amina Bouslimani 1 collaboration

Morgan Panitchpakdi 1 collaboration

Annabell Linck 1 collaboration

Changhui Guan 1 collaboration

Julia Oh 1 collaboration

Helge B Bode 1 collaboration

Tyler M Yasaka 1 collaboration

Liang Lu 1 collaboration

Aditya Bhagwat 1 collaboration

Mingxun Wang 1 collaboration

Emanuel Schorsch 1 collaboration

D Sculley 1 collaboration

Elizabeth H Dorfman 1 collaboration

Paul J Foster 1 collaboration

Lily H Peng 1 collaboration

Sonia Phene 1 collaboration

Naama Hammel 1 collaboration

Yi-Yuan Lee 1 collaboration

Desnor N Chigumba 1 collaboration

Shen Wang 1 collaboration

Neel Mittal 1 collaboration

Cameron Miller 1 collaboration

Benjamin Krummenacher 1 collaboration

Haodong Liu 1 collaboration

Aditya Kannan 1 collaboration

Keshav Narayan 1 collaboration

Samuel T Slocum 1 collaboration

Bryan L Roth 1 collaboration

Muqing Zhou 1 collaboration

Yihao Zhuang 1 collaboration

Sitong Liu 1 collaboration

Hyonyoung Shin 1 collaboration

Torin Kovach 1 collaboration

Gloria Oh 1 collaboration

Xiao Liu 1 collaboration

Yuting Deng 1 collaboration

Xiaofeng Wang 1 collaboration

David H Sherman 1 collaboration

Pamela J Schultz 1 collaboration

Jason A Clement 1 collaboration

Ashootosh Tripathi 1 collaboration

Romel Baral 1 collaboration

Yuying Bian 1 collaboration

Paul Kim 1 collaboration

Wei-Hung Weng 1 collaboration

Sebastien Baur 1 collaboration

Mayank Daswani 1 collaboration

Christina Chen 1 collaboration

Lauren Harrell 1 collaboration

Sujay Kakarmath 1 collaboration

Mariam Jabara 1 collaboration

Yossi Matias 1 collaboration

Greg S Corrado 1 collaboration

Shravya Shetty 1 collaboration

Shruthi Prabhakara 1 collaboration

Yun Liu 1 collaboration

Goodarz Danaei 1 collaboration

Diego Ardila 1 collaboration