Protein compactness and interaction valency define the architecture of a biomolecular condensate across scales.

Large1 S. cerevisiae biomolecular condensate colloid disordered protein fractal cluster liquid-liquid phase separation molecular biophysics physics of living systems structural biology

Journal

eLife
ISSN: 2050-084X
Titre abrégé: Elife
Pays: England
ID NLM: 101579614

Informations de publication

Date de publication:
20 07 2023
Historique:
received: 06 05 2022
accepted: 18 07 2023
medline: 8 8 2023
pubmed: 20 7 2023
entrez: 20 7 2023
Statut: epublish

Résumé

Non-membrane-bound biomolecular condensates have been proposed to represent an important mode of subcellular organization in diverse biological settings. However, the fundamental principles governing the spatial organization and dynamics of condensates at the atomistic level remain unclear. The

Identifiants

pubmed: 37470705
doi: 10.7554/eLife.80038
pii: 80038
pmc: PMC10406433
doi:
pii:

Substances chimiques

Fungal Proteins 0

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Subventions

Organisme : Austrian Science Fund FWF
ID : P 30550
Pays : Austria
Organisme : Austrian Science Fund FWF
ID : P 30680-B21
Pays : Austria
Organisme : Austrian Science Fund FWF
ID : F79
Pays : Austria

Informations de copyright

© 2023, Polyansky, Gallego et al.

Déclaration de conflit d'intérêts

AP, LG, RE, AK, BZ No competing interests declared

Références

J Biol Chem. 2019 Oct 4;294(40):14823-14835
pubmed: 31444270
Science. 2020 Feb 7;367(6478):694-699
pubmed: 32029630
Structure. 1994 Jul 15;2(7):641-9
pubmed: 7922041
J Chem Theory Comput. 2016 Apr 12;12(4):2055-65
pubmed: 26989950
Nat Chem. 2022 Feb;14(2):196-207
pubmed: 34931046
Protein Sci. 2021 Jul;30(7):1418-1426
pubmed: 33982350
Nature. 2017 Jun 8;546(7657):243-247
pubmed: 28562589
Proc Natl Acad Sci U S A. 2022 Jul 12;119(28):e2202222119
pubmed: 35787038
Mol Cell. 2015 Mar 5;57(5):936-947
pubmed: 25747659
Nat Mater. 2018 Dec;17(12):1154-1163
pubmed: 30323334
Annu Rev Biophys. 2012;41:429-52
pubmed: 22577825
Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7189-94
pubmed: 26015579
Nat Commun. 2022 Nov 28;13(1):7326
pubmed: 36443315
Adv Colloid Interface Sci. 2016 Sep;235:1-13
pubmed: 27233526
Nat Protoc. 2015 Jun;10(6):845-58
pubmed: 25950237
Elife. 2018 Feb 09;7:
pubmed: 29424691
J Chem Theory Comput. 2021 Jan 12;17(1):525-537
pubmed: 33307683
Biosci Biotechnol Biochem. 1996 Nov;60(11):1757-63
pubmed: 8987850
Biophys J. 2009 Nov 18;97(10):2839-45
pubmed: 19917239
Proc Natl Acad Sci U S A. 2022 May 10;119(19):e2200559119
pubmed: 35512095
Biophys J. 2004 Dec;87(6):4259-70
pubmed: 15361408
Nat Struct Mol Biol. 2019 Jul;26(7):637-648
pubmed: 31270472
Proc Natl Acad Sci U S A. 2022 Mar 29;119(13):e2120799119
pubmed: 35333653
Biophys J. 2014 Sep 2;107(5):1226-1235
pubmed: 25185558
Nat Commun. 2014 Jul 24;5:4494
pubmed: 25058002
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):5883-5894
pubmed: 32132204
Protein J. 2009 Oct;28(7-8):305-25
pubmed: 19768526
J Mol Biol. 2019 Dec 6;431(24):4978-4992
pubmed: 31442477
Nat Rev Mol Cell Biol. 2017 May;18(5):285-298
pubmed: 28225081
Annu Rev Biophys. 2021 May 6;50:135-156
pubmed: 33503380
J Phys Chem B. 2015 Apr 2;119(13):4644-52
pubmed: 25792156
Phys Rev A Gen Phys. 1985 Mar;31(3):1695-1697
pubmed: 9895674
Nat Chem. 2017 Nov;9(11):1118-1125
pubmed: 29064502
Proc Natl Acad Sci U S A. 2019 May 14;116(20):9843-9852
pubmed: 31036655
Science. 2009 Jun 26;324(5935):1729-32
pubmed: 19460965
Nat Chem. 2020 Sep;12(9):814-825
pubmed: 32747754
Proc Natl Acad Sci U S A. 2018 Oct 2;115(40):9929-9934
pubmed: 30217894
J Phys Chem B. 2020 Dec 24;124(51):11671-11679
pubmed: 33302617
Nat Commun. 2021 Feb 17;12(1):1085
pubmed: 33597515
Biochim Biophys Acta. 2013 Oct;1828(10):2347-58
pubmed: 23098834
Nat Commun. 2019 Jul 19;10(1):3230
pubmed: 31324804
Chem Rev. 2023 Jul 26;123(14):8945-8987
pubmed: 36881934
J Chem Theory Comput. 2022 Mar 8;18(3):1915-1928
pubmed: 35174713
Mol Cell. 2015 Oct 15;60(2):208-19
pubmed: 26412307
Proc Natl Acad Sci U S A. 2017 Sep 26;114(39):E8194-E8203
pubmed: 28894006
Cell. 2015 Sep 24;163(1):123-33
pubmed: 26406374
J Am Chem Soc. 2020 Jan 15;142(2):874-883
pubmed: 31845799
Nat Rev Mol Cell Biol. 2021 Mar;22(3):165-182
pubmed: 32873929
Cell. 2020 Apr 16;181(2):306-324.e28
pubmed: 32302570
J Phys Chem Lett. 2021 Nov 18;12(45):10994-10995
pubmed: 34788997
Nature. 2020 Mar;579(7800):592-597
pubmed: 32214243
Cell. 2018 Jul 26;174(3):688-699.e16
pubmed: 29961577
Biophys J. 2019 Oct 1;117(7):1285-1300
pubmed: 31540706
J Phys Chem B. 2020 Oct 15;124(41):9009-9016
pubmed: 32936641
J Phys Chem B. 2012 Mar 8;116(9):2891-904
pubmed: 22229789
Mol Cell. 2018 Feb 1;69(3):465-479.e7
pubmed: 29358076
Nat Commun. 2022 Sep 26;13(1):5643
pubmed: 36163138
Cell. 2020 Apr 16;181(2):346-361.e17
pubmed: 32302572
Trends Cell Biol. 2018 Jun;28(6):420-435
pubmed: 29602697
J Phys Chem B. 2015 Apr 23;119(16):5113-23
pubmed: 25764013
Soft Matter. 2020 Mar 28;16(12):3143-3153
pubmed: 32159545
J Comput Chem. 2005 Dec;26(16):1689-700
pubmed: 16200637
EMBO J. 2022 Mar 1;41(5):e109952
pubmed: 35107832
Cell Commun Signal. 2016 Jan 05;14:1
pubmed: 26727894
Nat Rev Mol Cell Biol. 2021 Mar;22(3):196-213
pubmed: 33510441
Phys Rev Lett. 1992 Jun 1;68(22):3327-3330
pubmed: 10045674
J Chem Theory Comput. 2017 Sep 12;13(9):4504-4513
pubmed: 28768101
J Colloid Interface Sci. 2005 Sep 15;289(2):394-401
pubmed: 15935361
Genes Dev. 2019 Dec 1;33(23-24):1619-1634
pubmed: 31594803
Nat Commun. 2020 Sep 15;11(1):4628
pubmed: 32934220
Proc Natl Acad Sci U S A. 2020 Jun 16;117(24):13238-13247
pubmed: 32482873
Biochemistry. 2018 May 1;57(17):2437-2451
pubmed: 29303563
Elife. 2017 Nov 09;6:
pubmed: 29120326
J Phys Chem B. 2018 May 31;122(21):5599-5609
pubmed: 29510047
J Chem Theory Comput. 2018 Jul 10;14(7):3796-3810
pubmed: 29799751
Trends Cell Biol. 2005 Feb;15(2):84-91
pubmed: 15695095
Proc Natl Acad Sci U S A. 2020 May 26;117(21):11421-11431
pubmed: 32393642
Mol Cell. 2022 Jun 16;82(12):2201-2214
pubmed: 35675815
Phys Rev E. 2020 Oct;102(4-1):042403
pubmed: 33212590
J Phys Chem B. 2009 Jan 29;113(4):1107-19
pubmed: 19125640
J Phys Chem B. 2021 Apr 29;125(16):4148-4161
pubmed: 33877835
Biophys J. 2021 Apr 6;120(7):1139-1149
pubmed: 33582138
Science. 2007 Dec 21;318(5858):1900-3
pubmed: 18096801
Proteins. 2010 Jun;78(8):1950-8
pubmed: 20408171
Annu Rev Genet. 2019 Dec 3;53:171-194
pubmed: 31430179
Annu Rev Biophys. 2020 May 6;49:107-133
pubmed: 32004090

Auteurs

Anton A Polyansky (AA)

Max Perutz Labs, Vienna Biocenter Campus (VBC), Vienna, Austria.
University of Vienna, Center for Molecular Biology, Department of Structural and Computational Biology, Vienna, Austria.

Laura D Gallego (LD)

Max Perutz Labs, Vienna Biocenter Campus (VBC), Vienna, Austria.
Medical University of Vienna, Center for Medical Biochemistry, Vienna, Austria.

Roman G Efremov (RG)

MM Shemyakin and Yu A Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russian Federation.

Alwin Köhler (A)

Max Perutz Labs, Vienna Biocenter Campus (VBC), Vienna, Austria.
Medical University of Vienna, Center for Medical Biochemistry, Vienna, Austria.
University of Vienna, Center for Molecular Biology, Department of Biochemistry and Cell Biology, Vienna, Austria.

Bojan Zagrovic (B)

Max Perutz Labs, Vienna Biocenter Campus (VBC), Vienna, Austria.
University of Vienna, Center for Molecular Biology, Department of Structural and Computational Biology, Vienna, Austria.

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Classifications MeSH