The cryo-EM structure of the CENP-A nucleosome in complex with ggKNL2.


Journal

The EMBO journal
ISSN: 1460-2075
Titre abrégé: EMBO J
Pays: England
ID NLM: 8208664

Informations de publication

Date de publication:
15 03 2023
Historique:
revised: 13 01 2023
received: 23 06 2022
accepted: 17 01 2023
pubmed: 7 2 2023
medline: 17 3 2023
entrez: 6 2 2023
Statut: ppublish

Résumé

Centromere protein A (CENP-A) nucleosomes containing the centromere-specific histone H3 variant CENP-A represent an epigenetic mark that specifies centromere position. The Mis18 complex is a licensing factor for new CENP-A deposition via the CENP-A chaperone, Holliday junction recognition protein (HJURP), on the centromere chromatin. Chicken KINETOCHORE NULL2 (KNL2) (ggKNL2), a Mis18 complex component, has a CENP-C-like motif, and our previous study suggested that ggKNL2 directly binds to the CENP-A nucleosome to recruit HJURP/CENP-A to the centromere. However, the molecular basis for CENP-A nucleosome recognition by ggKNL2 has remained unclear. Here, we present the cryo-EM structure of the chicken CENP-A nucleosome in complex with a ggKNL2 fragment containing the CENP-C-like motif. Chicken KNL2 distinguishes between CENP-A and histone H3 in the nucleosome using the CENP-C-like motif and its downstream region. Both the C-terminal tail and the RG-loop of CENP-A are simultaneously recognized as CENP-A characteristics. The CENP-A nucleosome-ggKNL2 interaction is thus essential for KNL2 functions. Furthermore, our structural, biochemical, and cell biology data indicate that ggKNL2 changes its binding partner at the centromere during chicken cell cycle progression.

Identifiants

pubmed: 36744604
doi: 10.15252/embj.2022111965
pmc: PMC10015371
doi:

Substances chimiques

Autoantigens 0
Cell Cycle Proteins 0
Centromere Protein A 0
Histones 0
Nucleosomes 0
DNA-Binding Proteins 0

Banques de données

PDB
['7Y7I']

Types de publication

Journal Article Research Support, Non-U.S. Gov't

Langues

eng

Sous-ensembles de citation

IM

Pagination

e111965

Informations de copyright

© 2023 The Authors. Published under the terms of the CC BY NC ND 4.0 license.

Références

Cell. 2008 Dec 12;135(6):1039-52
pubmed: 19070575
Elife. 2017 Jan 06;6:
pubmed: 28059702
Cell Res. 2018 Mar;28(3):374-378
pubmed: 29350209
Nat Commun. 2019 Sep 6;10(1):4046
pubmed: 31492860
J Cell Biol. 2015 Jul 6;210(1):11-22
pubmed: 26124289
EMBO Rep. 2019 Oct 4;20(10):e48913
pubmed: 31475439
Methods. 2004 May;33(1):3-11
pubmed: 15039081
EMBO J. 2023 Mar 15;42(6):e111965
pubmed: 36744604
Genes Cells. 2006 Jun;11(6):673-84
pubmed: 16716197
Nat Commun. 2019 Feb 4;10(1):576
pubmed: 30718488
Cell. 2004 Sep 17;118(6):715-29
pubmed: 15369671
Elife. 2017 Dec 27;6:
pubmed: 29280735
Dev Cell. 2012 Jan 17;22(1):52-63
pubmed: 22169070
Biochemistry. 2012 Apr 17;51(15):3302-9
pubmed: 22448809
Curr Opin Cell Biol. 2013 Jun;25(3):334-40
pubmed: 23490282
J Cell Biol. 2015 Jun 22;209(6):789-801
pubmed: 26076692
EMBO Rep. 2017 Jun;18(6):894-905
pubmed: 28377371
EMBO J. 2021 Mar 1;40(5):e105671
pubmed: 33463726
J Comput Chem. 2004 Oct;25(13):1605-12
pubmed: 15264254
J Cell Biol. 2009 Jul 27;186(2):173-82
pubmed: 19620631
Nature. 2019 Oct;574(7777):278-282
pubmed: 31578520
J Struct Biol. 2016 Jan;193(1):1-12
pubmed: 26592709
Cell Rep. 2016 Jun 7;15(10):2127-2135
pubmed: 27239045
Cell. 2009 May 1;137(3):472-84
pubmed: 19410544
F1000Res. 2015 Aug 05;4:474
pubmed: 27127616
J Cell Biol. 2019 Dec 2;218(12):4042-4062
pubmed: 31676716
Dev Cell. 2014 Sep 8;30(5):496-508
pubmed: 25203206
Science. 2013 May 31;340(6136):1110-3
pubmed: 23723239
Nature. 2016 Sep 8;537(7619):249-253
pubmed: 27580032
Cell. 2012 Feb 3;148(3):487-501
pubmed: 22304917
Methods Enzymol. 2004;375:23-44
pubmed: 14870657
Cell. 2009 May 1;137(3):485-97
pubmed: 19410545
Nat Methods. 2012 Jun 28;9(7):676-82
pubmed: 22743772
Cell Rep. 2020 Nov 17;33(7):108388
pubmed: 33207191
Nature. 2011 Jul 10;476(7359):232-5
pubmed: 21743476
J Cell Biol. 2007 Mar 12;176(6):795-805
pubmed: 17339380
Genes Dev. 2015 May 15;29(10):1058-73
pubmed: 25943375
Science. 2015 May 8;348(6235):699-703
pubmed: 25954010
Chromosoma. 2011 Oct;120(5):425-46
pubmed: 21751032
Nucleus. 2012 Jan-Feb;3(1):101-10
pubmed: 22540025
Cell Cycle. 2013 Oct 1;12(19):3133-4
pubmed: 24013416
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501
pubmed: 20383002
J Cell Biol. 2007 Mar 12;176(6):757-63
pubmed: 17339379
J Struct Biol. 2005 Oct;152(1):36-51
pubmed: 16182563
Nat Cell Biol. 2009 Jul;11(7):896-902
pubmed: 19543270
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877
pubmed: 31588918
Elife. 2018 Nov 09;7:
pubmed: 30412051
Nat Cell Biol. 2006 May;8(5):458-69
pubmed: 16622419
Nat Rev Genet. 2008 Dec;9(12):923-37
pubmed: 19002142
Plant Cell. 2017 Jan;29(1):144-155
pubmed: 28062749
Cell. 2014 Jul 17;158(2):397-411
pubmed: 25036634
EMBO Rep. 2016 Apr;17(4):496-507
pubmed: 26921242
Dev Cell. 2007 Jan;12(1):17-30
pubmed: 17199038
Curr Biol. 2019 Aug 19;29(16):2625-2639.e5
pubmed: 31353180
Cell. 2011 Feb 18;144(4):471-9
pubmed: 21335232
Mol Biol Cell. 2015 Aug 1;26(15):2742-54
pubmed: 26063729
Bio Protoc. 2021 Jan 05;11(1):e3879
pubmed: 33732767
Chromosome Res. 2022 Mar;30(1):43-57
pubmed: 34997387
Dev Cell. 2017 Jul 24;42(2):190-199.e10
pubmed: 28743005
Dev Cell. 2017 Jul 24;42(2):181-189.e3
pubmed: 28743004
Science. 2018 Jan 19;359(6373):339-343
pubmed: 29269420
Nat Methods. 2017 Apr;14(4):331-332
pubmed: 28250466
Mol Cell. 2022 Jun 2;82(11):2113-2131.e8
pubmed: 35525244
Mol Cell. 2016 Mar 3;61(5):774-787
pubmed: 26942680
Science. 2022 May 20;376(6595):844-852
pubmed: 35420891
J Cell Biol. 2011 Sep 19;194(6):855-71
pubmed: 21911481
EMBO J. 2019 Feb 15;38(4):
pubmed: 30606714
Nat Cell Biol. 2006 May;8(5):446-57
pubmed: 16622420

Auteurs

Honghui Jiang (H)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.

Mariko Ariyoshi (M)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.

Tetsuya Hori (T)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.

Reito Watanabe (R)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.

Fumiaki Makino (F)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.
JEOL Ltd., Akishima, Japan.

Keiichi Namba (K)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.
RIKEN Center for Biosystems Dynamics Research and SPring-8 Center, Suita, Japan.
JEOL YOKOGUSHI Research Alliance Laboratories, Osaka University, Suita, Japan.

Tatsuo Fukagawa (T)

Graduate School of Frontier Biosciences, Osaka University, Suita, Japan.

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Classifications MeSH