Tarmo Äijö

Affiliations

Center for Computational Biology, Flatiron Institute, New York, NY, USA.

ORCID: http://orcid.org/0000-0002-3008-4634

Publications (9)

High-definition spatial transcriptomics for in situ tissue profiling.

Nature methods

Avec: Sanja Vickovic , Gökcen Eraslan , Fredrik Salmén , Johanna Klughammer , Linnea Stenbeck , Denis Schapiro , Tarmo Äijö , Richard Bonneau , Ludvig Bergenstråhle , José Fernandéz Navarro , Joshua Gould , Gabriel K Griffin , Åke Borg , Mostafa Ronaghi , Jonas Frisén , Joakim Lundeberg , Aviv Regev , Patrik L Ståhl

Improving the Reliability of Peer Review Without a Gold Standard.

Journal of imaging informatics in medicine

Avec: Tarmo Äijö , Daniel Elgort , Murray Becker , Richard Herzog , Richard K J Brown , Benjamin L Odry , Ron Vianu

TET proteins regulate

Frontiers in immunology

Avec: Marianthi Gioulbasani , Tarmo Äijö , Jair E Valenzuela , Julia Buquera Bettes , Ageliki Tsagaratou

Migratory DCs activate TGF-β to precondition naïve CD8

Science (New York, N.Y.)

Avec: Vinidhra Mani , Shannon K Bromley , Tarmo Äijö , Rut Mora-Buch , Esteban Carrizosa , Ross D Warner , Moustafa Hamze , Debattama R Sen , Alexandra Y Chasse , Alina Lorant , Jason W Griffith , Rod A Rahimi , Craig P McEntee , Kate L Jeffrey , Francesco Marangoni , Mark A Travis , Adam Lacy-Hulbert , Andrew D Luster , Thorsten R Mempel

Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis.

Science (New York, N.Y.)

Avec: Silas Maniatis , Tarmo Äijö , Sanja Vickovic , Catherine Braine , Kristy Kang , Annelie Mollbrink , Delphine Fagegaltier , Žaneta Andrusivová , Sami Saarenpää , Gonzalo Saiz-Castro , Miguel Cuevas , Aaron Watters , Joakim Lundeberg , Richard Bonneau , Hemali Phatnani

TET proteins regulate T cell and iNKT cell lineage specification in a TET2 catalytic dependent manner.

Frontiers in immunology

Avec: Tarmo Äijö , Dimitris Theofilatos , Meng Cheng , Matthew D Smith , Yue Xiong , Albert S Baldwin , Ageliki Tsagaratou

Protocol to isolate mature thymic T cell subsets using fluorescence-activated cell sorting for assessing gene expression by RNA-seq and transcription factor binding across the genome by CUT&RUN.

STAR protocols

Avec: Dimitris Theofilatos , Tarmo Äijö , Ageliki Tsagaratou

Deciphering the TET3 interactome in primary thymic developing T cells.

iScience

Avec: Dimitris Theofilatos , Tricia Ho , Greg Waitt , Tarmo Äijö , Lucio M Schiapparelli , Erik J Soderblom , Ageliki Tsagaratou

Tissue and cellular spatiotemporal dynamics in colon aging.

bioRxiv : the preprint server for biology

Avec: Aidan C Daly , Francesco Cambuli , Tarmo Äijö , Britta Lötstedt , Nemanja Marjanovic , Olena Kuksenko , Matthew Smith-Erb , Sara Fernandez , Daniel Domovic , Nicholas Van Wittenberghe , Eugene Drokhlyansky , Gabriel K Griffin , Hemali Phatnani , Richard Bonneau , Aviv Regev , Sanja Vickovic

Réseau de co-auteurs

Ageliki Tsagaratou 4 collaborations

Sanja Vickovic 3 collaborations

Richard Bonneau 3 collaborations

Dimitris Theofilatos 3 collaborations

Gabriel K Griffin 2 collaborations

Joakim Lundeberg 2 collaborations

Aviv Regev 2 collaborations

Hemali Phatnani 2 collaborations

Gökcen Eraslan 1 collaboration

Fredrik Salmén 1 collaboration

Johanna Klughammer 1 collaboration

Linnea Stenbeck 1 collaboration

Denis Schapiro 1 collaboration

Ludvig Bergenstråhle 1 collaboration

José Fernandéz Navarro 1 collaboration

Joshua Gould 1 collaboration

Åke Borg 1 collaboration

Mostafa Ronaghi 1 collaboration

Jonas Frisén 1 collaboration

Patrik L Ståhl 1 collaboration

Daniel Elgort 1 collaboration

Murray Becker 1 collaboration

Richard Herzog 1 collaboration

Richard K J Brown 1 collaboration

Benjamin L Odry 1 collaboration

Ron Vianu 1 collaboration

Marianthi Gioulbasani 1 collaboration

Jair E Valenzuela 1 collaboration

Julia Buquera Bettes 1 collaboration

Vinidhra Mani 1 collaboration

Shannon K Bromley 1 collaboration

Rut Mora-Buch 1 collaboration

Esteban Carrizosa 1 collaboration

Ross D Warner 1 collaboration

Moustafa Hamze 1 collaboration

Debattama R Sen 1 collaboration

Alexandra Y Chasse 1 collaboration

Alina Lorant 1 collaboration

Jason W Griffith 1 collaboration

Rod A Rahimi 1 collaboration

Craig P McEntee 1 collaboration

Kate L Jeffrey 1 collaboration

Francesco Marangoni 1 collaboration

Mark A Travis 1 collaboration

Adam Lacy-Hulbert 1 collaboration

Andrew D Luster 1 collaboration

Thorsten R Mempel 1 collaboration

Silas Maniatis 1 collaboration

Catherine Braine 1 collaboration

Kristy Kang 1 collaboration

Annelie Mollbrink 1 collaboration

Delphine Fagegaltier 1 collaboration

Žaneta Andrusivová 1 collaboration

Sami Saarenpää 1 collaboration

Gonzalo Saiz-Castro 1 collaboration

Miguel Cuevas 1 collaboration

Aaron Watters 1 collaboration

Meng Cheng 1 collaboration

Matthew D Smith 1 collaboration

Yue Xiong 1 collaboration

Albert S Baldwin 1 collaboration

Tricia Ho 1 collaboration

Greg Waitt 1 collaboration

Lucio M Schiapparelli 1 collaboration

Erik J Soderblom 1 collaboration

Aidan C Daly 1 collaboration

Francesco Cambuli 1 collaboration

Britta Lötstedt 1 collaboration

Nemanja Marjanovic 1 collaboration

Olena Kuksenko 1 collaboration

Matthew Smith-Erb 1 collaboration

Sara Fernandez 1 collaboration

Daniel Domovic 1 collaboration

Nicholas Van Wittenberghe 1 collaboration

Eugene Drokhlyansky 1 collaboration