Sofia Ananiadou

Affiliations

Department of Anesthesia and Intensive Care, ASST Cremona, Cremona, Italy.

Publications (32)

Annotating and detecting phenotypic information for chronic obstructive pulmonary disease.

JAMIA open

Avec: Meizhi Ju , Andrea D Short , Paul Thompson , Nawar Diar Bakerly , Georgios V Gkoutos , Loukia Tsaprouni , Sophia Ananiadou

Comparing neural models for nested and overlapping biomedical event detection.

BMC bioinformatics

Avec: Kurt Espinosa , Panagiotis Georgiadis , Fenia Christopoulou , Meizhi Ju , Makoto Miwa , Sophia Ananiadou

Emotions and Topics Expressed on Twitter During the COVID-19 Pandemic in the United Kingdom: Comparative Geolocation and Text Mining Analysis.

Journal of medical Internet research

Avec: Hassan Alhuzali , Tianlin Zhang , Sophia Ananiadou

Improving clinical named entity recognition in Chinese using the graphical and phonetic feature.

BMC medical informatics and decision making

Avec: Yifei Wang , Sophia Ananiadou , Jun'ichi Tsujii

Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries.

BMC bioinformatics

Avec: Yipei Wang , Xingyu Fan , Luoxin Chen , Eric I-Chao Chang , Sophia Ananiadou , Junichi Tsujii , Yan Xu

An ensemble of neural models for nested adverse drug events and medication extraction with subwords.

Journal of the American Medical Informatics Association : JAMIA

Avec: Meizhi Ju , Nhung T H Nguyen , Makoto Miwa , Sophia Ananiadou

Women's health in

BMJ open

Avec: Eva N Hamulyák , Austin J Brockmeier , Johanna D Killas , Sophia Ananiadou , Saskia Middeldorp , Armand M Leroi

Non-invAsive VentIlation for early General wArd respiraTory failurE (NAVIGATE): A multicenter randomized controlled study. Protocol and statistical analysis plan.

Contemporary clinical trials

Avec: Luca Cabrini , Claudia Brusasco , Agostino Roasio , Francesco Corradi , Pasquale Nardelli , Matteo Filippini , Virginia Cotticelli , Alessandro Belletti , Lorenzo Ferrera , Elio Antonucci , Martina Baiardo Redaelli , Marco Lattuada , Sergio Colombo , Luigi Olper , Giuseppe Ponzetta , Sofia Ananiadou , Giacomo Monti , Luca Severi , Giulia Maj , Giuseppe Giardina , Giuseppe Biondi-Zoccai , Umberto Benedetto , Marco Gemma , Sarah Sophia Michelle Cavallero , Ludhmila Abrahao Hajjar , Alberto Zangrillo , Rinaldo Bellomo , Giovanni Landoni

A Text Mining Pipeline Using Active and Deep Learning Aimed at Curating Information in Computational Neuroscience.

Neuroinformatics

Avec: Matthew Shardlow , Meizhi Ju , Maolin Li , Christian O'Reilly , Elisabetta Iavarone , John McNaught , Sophia Ananiadou

Improving reference prioritisation with PICO recognition.

BMC medical informatics and decision making

Avec: Austin J Brockmeier , Meizhi Ju , Piotr Przybyła , Sophia Ananiadou

Contextualized medication event extraction with levitated markers.

Journal of biomedical informatics

Avec: Jake Vasilakes , Panagiotis Georgiadis , Nhung T H Nguyen , Makoto Miwa , Sophia Ananiadou

Continuous vs Intermittent Meropenem Administration in Critically Ill Patients With Sepsis: The MERCY Randomized Clinical Trial.

JAMA

Avec: Giacomo Monti , Nikola Bradic , Matteo Marzaroli , Aidos Konkayev , Evgeny Fominskiy , Yuki Kotani , Valery V Likhvantsev , Elena Momesso , Pavel Nogtev , Rosetta Lobreglio , Ivan Redkin , Fabio Toffoletto , Andrea Bruni , Martina Baiardo Redaelli , Natascia D'Andrea , Gianluca Paternoster , Anna Mara Scandroglio , Francesca Gallicchio , Mariano Ballestra , Maria Grazia Calabrò , Antonella Cotoia , Romina Perone , Raffaele Cuffaro , Giorgia Montrucchio , Vincenzo Pota , Sofia Ananiadou , Rosalba Lembo , Mario Musu , Simon Rauch , Carola Galbiati , Fulvio Pinelli , Laura Pasin , Fabio Guarracino , Giuseppe Santarpino , Felice Eugenio Agrò , Tiziana Bove , Francesco Corradi , Francesco Forfori , Federico Longhini , Maurizio Cecconi , Giovanni Landoni , Rinaldo Bellomo , Alberto Zangrillo , Auteur inconnu

Supporting the working life exposome: Annotating occupational exposure for enhanced literature search.

PloS one

Avec: Paul Thompson , Sophia Ananiadou , Ioannis Basinas , Bendik C Brinchmann , Christine Cramer , Karen S Galea , Calvin Ge , Panagiotis Georgiadis , Jorunn Kirkeleit , Eelco Kuijpers , Nhung Nguyen , Roberto Nuñez , Vivi Schlünssen , Zara Ann Stokholm , Evana Amir Taher , Håkan Tinnerberg , Martie Van Tongeren , Qianqian Xie

Syntactically-informed word representations from graph neural network.

Neurocomputing

Avec: Thy Thy Tran , Makoto Miwa , Sophia Ananiadou

Quantifying risk factors in medical reports with a context-aware linear model.

Journal of the American Medical Informatics Association : JAMIA

Avec: Piotr Przybyła , Austin J Brockmeier , Sophia Ananiadou

Thalia: semantic search engine for biomedical abstracts.

Bioinformatics (Oxford, England)

Avec: Axel J Soto , Piotr Przybyła , Sophia Ananiadou

BioVAE: a pre-trained latent variable language model for biomedical text mining.

Bioinformatics (Oxford, England)

Avec: Hai-Long Trieu , Makoto Miwa , Sophia Ananiadou

Natural language processing applied to mental illness detection: a narrative review.

NPJ digital medicine

Avec: Tianlin Zhang , Annika M Schoene , Shaoxiong Ji , Sophia Ananiadou

Youth Culturally adapted Manual Assisted Problem Solving Training (YCMAP) in Pakistani adolescent with a history of self-harm: protocol for multicentre clinical and cost-effectiveness randomised controlled trial.

BMJ open

Avec: Nusrat Husain , Sehrish Tofique , Imran B Chaudhry , Tayyeba Kiran , Peter Taylor , Christopher Williams , Rakhshi Memon , Shilpa Aggarwal , Mohsin Hassan Alvi , S Ananiadou , Moin Ahmad Ansari , Saadia Aseem , Andrew Beck , Sumira Alam , Erminia Colucci , Kate Davidson , Sarah Edwards , Richard Emsley , Jonathan Green , Anil Gumber , Keith Hawton , Farhat Jafri , Ayesha Khaliq , Thomas Mason , Ann Mcreath , Ayesha Minhas , Farooq Naeem , Haider Ali Naqvi , Amna Noureen , Maria Panagioti , Anita Patel , Aaron Poppleton , Tinevimbo Shiri , Mima Simic , Sarwat Sultan , Asad Tamizuddin Nizami , Zainab Zadeh , Shehla Naeem Zafar , Nasim Chaudhry

A term-based and citation network-based search system for COVID-19.

JAMIA open

Avec: Chrysoula Zerva , Samuel Taylor , Axel J Soto , Nhung T H Nguyen , Sophia Ananiadou

A Narrative Literature Review of Natural Language Processing Applied to the Occupational Exposome.

International journal of environmental research and public health

Avec: Annika M Schoene , Ioannis Basinas , Martie van Tongeren , Sophia Ananiadou

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods.

Journal of the American Medical Informatics Association : JAMIA

Avec: Fenia Christopoulou , Thy Thy Tran , Sunil Kumar Sahu , Makoto Miwa , Sophia Ananiadou

Hypothesis, analysis and synthesis, it's all Greek to me.

eLife

Avec: Ioannis Iliopoulos , Sophia Ananiadou , Antoine Danchin , John Pa Ioannidis , Peter D Katsikis , Christos A Ouzounis , Vasilis J Promponas

Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error.

Systematic reviews

Avec: Alexandra Bannach-Brown , Piotr Przybyła , James Thomas , Andrew S C Rice , Sophia Ananiadou , Jing Liao , Malcolm Robert Macleod

The pace of modern culture.

Nature human behaviour

Avec: Ben Lambert , Georgios Kontonatsios , Matthias Mauch , Theodore Kokkoris , Matthew Jockers , Sophia Ananiadou , Armand M Leroi

Automatic identification of suicide notes with a transformer-based deep learning model.

Internet interventions

Avec: Tianlin Zhang , Annika M Schoene , Sophia Ananiadou

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding.

NPJ systems biology and applications

Avec: Kanix Wang , Robert Stevens , Halima Alachram , Yu Li , Larisa Soldatova , Ross King , Sophia Ananiadou , Annika M Schoene , Maolin Li , Fenia Christopoulou , José Luis Ambite , Joel Matthew , Sahil Garg , Ulf Hermjakob , Daniel Marcu , Emily Sheng , Tim Beißbarth , Edgar Wingender , Aram Galstyan , Xin Gao , Brendan Chambers , Weidi Pan , Bohdan B Khomtchouk , James A Evans , Andrey Rzhetsky

A Deep Learning Approach to Refine the Identification of High-Quality Clinical Research Articles From the Biomedical Literature: Protocol for Algorithm Development and Validation.

JMIR research protocols

Avec: Wael Abdelkader , Tamara Navarro , Rick Parrish , Chris Cotoi , Federico Germini , Lori-Ann Linkins , Alfonso Iorio , R Brian Haynes , Sophia Ananiadou , Lingyang Chu , Cynthia Lokker

DeepEventMine: end-to-end neural nested event extraction from biomedical texts.

Bioinformatics (Oxford, England)

Avec: Hai-Long Trieu , Thy Thy Tran , Khoa N A Duong , Anh Nguyen , Makoto Miwa , Sophia Ananiadou

Continuous infusion versus intermittent administration of meropenem in critically ill patients (MERCY): A multicenter randomized double-blind trial. Rationale and design.

Contemporary clinical trials

Avec: Giacomo Monti , Carola Galbiati , Fabio Toffoletto , Maria Grazia Calabrò , Sergio Colombo , Barbara Ferrara , Giuseppe Giardina , Rosalba Lembo , Matteo Marzaroli , Elena Moizo , Milena Mucci , Nicola Pasculli , Valentina Paola Plumari , Anna Mara Scandroglio , Margherita Tozzi , Elena Momesso , Nicoletta Boffa , Rosetta Lobreglio , Giorgia Montrucchio , Fabio Guarracino , Umberto Benedetto , Giuseppe Biondi-Zoccai , Fabrizio D'Ascenzo , Natascia D'Andrea , Gianluca Paternoster , Sofia Ananiadou , Mariano Ballestra , Antonio De Sio , Vincenzo Pota , Antonella Cotoia , Andrea Della Selva , Andrea Bruni , Giacomo Iapichino , Nikola Bradić , Francesco Corradi , Marco Gemma , Pavel Nogtev , Marina Petrova , Felice Eugenio Agrò , Luca Cabrini , Francesco Forfori , Valery Likhvantsev , Tiziana Bove , Gabriele Finco , Giovanni Landoni , Alberto Zangrillo , Auteur inconnu

A Novel Automated Approach to Mutation-Cancer Relation Extraction by Incorporating Heterogeneous Knowledge.

IEEE journal of biomedical and health informatics

Avec: Jiarun Cao , Elke M van Veen , Niels Peek , Andrew G Renehan , Sophia Ananiadou

Knowledge-enhanced Graph Topic Transformer for Explainable Biomedical Text Summarization.

IEEE journal of biomedical and health informatics

Avec: Qianqian Xie , Prayag Tiwari , Sophia Ananiadou

Réseau de co-auteurs

Sophia Ananiadou 28 collaborations

Makoto Miwa 7 collaborations

Meizhi Ju 5 collaborations

Piotr Przybyła 4 collaborations

Annika M Schoene 4 collaborations

Panagiotis Georgiadis 3 collaborations

Fenia Christopoulou 3 collaborations

Tianlin Zhang 3 collaborations

Nhung T H Nguyen 3 collaborations

Austin J Brockmeier 3 collaborations

Francesco Corradi 3 collaborations

Giacomo Monti 3 collaborations

Alberto Zangrillo 3 collaborations

Giovanni Landoni 3 collaborations

Thy Thy Tran 3 collaborations

Paul Thompson 2 collaborations

Armand M Leroi 2 collaborations

Luca Cabrini 2 collaborations

Martina Baiardo Redaelli 2 collaborations

Sergio Colombo 2 collaborations

Giuseppe Giardina 2 collaborations

Giuseppe Biondi-Zoccai 2 collaborations

Umberto Benedetto 2 collaborations

Marco Gemma 2 collaborations

Rinaldo Bellomo 2 collaborations

Maolin Li 2 collaborations

Matteo Marzaroli 2 collaborations

Elena Momesso 2 collaborations

Pavel Nogtev 2 collaborations

Rosetta Lobreglio 2 collaborations

Fabio Toffoletto 2 collaborations

Andrea Bruni 2 collaborations

Natascia D'Andrea 2 collaborations

Gianluca Paternoster 2 collaborations

Anna Mara Scandroglio 2 collaborations

Mariano Ballestra 2 collaborations

Maria Grazia Calabrò 2 collaborations

Antonella Cotoia 2 collaborations

Giorgia Montrucchio 2 collaborations

Vincenzo Pota 2 collaborations

Rosalba Lembo 2 collaborations

Carola Galbiati 2 collaborations

Fabio Guarracino 2 collaborations

Felice Eugenio Agrò 2 collaborations

Tiziana Bove 2 collaborations

Francesco Forfori 2 collaborations

None None 2 collaborations

Ioannis Basinas 2 collaborations

Qianqian Xie 2 collaborations

Axel J Soto 2 collaborations

Hai-Long Trieu 2 collaborations

Andrea D Short 1 collaboration

Nawar Diar Bakerly 1 collaboration

Georgios V Gkoutos 1 collaboration

Loukia Tsaprouni 1 collaboration

Kurt Espinosa 1 collaboration

Hassan Alhuzali 1 collaboration

Yifei Wang 1 collaboration

Jun'ichi Tsujii 1 collaboration

Yipei Wang 1 collaboration

Xingyu Fan 1 collaboration

Luoxin Chen 1 collaboration

Eric I-Chao Chang 1 collaboration

Junichi Tsujii 1 collaboration

Yan Xu 1 collaboration

Eva N Hamulyák 1 collaboration

Johanna D Killas 1 collaboration

Saskia Middeldorp 1 collaboration

Claudia Brusasco 1 collaboration

Agostino Roasio 1 collaboration

Pasquale Nardelli 1 collaboration

Matteo Filippini 1 collaboration

Virginia Cotticelli 1 collaboration

Alessandro Belletti 1 collaboration

Lorenzo Ferrera 1 collaboration

Elio Antonucci 1 collaboration

Marco Lattuada 1 collaboration

Luigi Olper 1 collaboration

Giuseppe Ponzetta 1 collaboration

Luca Severi 1 collaboration

Giulia Maj 1 collaboration

Sarah Sophia Michelle Cavallero 1 collaboration

Ludhmila Abrahao Hajjar 1 collaboration

Matthew Shardlow 1 collaboration

Christian O'Reilly 1 collaboration

Elisabetta Iavarone 1 collaboration

John McNaught 1 collaboration

Jake Vasilakes 1 collaboration

Nikola Bradic 1 collaboration

Aidos Konkayev 1 collaboration

Evgeny Fominskiy 1 collaboration

Yuki Kotani 1 collaboration

Valery V Likhvantsev 1 collaboration

Ivan Redkin 1 collaboration

Francesca Gallicchio 1 collaboration

Romina Perone 1 collaboration

Raffaele Cuffaro 1 collaboration

Mario Musu 1 collaboration

Simon Rauch 1 collaboration

Fulvio Pinelli 1 collaboration

Laura Pasin 1 collaboration

Giuseppe Santarpino 1 collaboration

Federico Longhini 1 collaboration

Maurizio Cecconi 1 collaboration

Bendik C Brinchmann 1 collaboration

Christine Cramer 1 collaboration

Karen S Galea 1 collaboration

Calvin Ge 1 collaboration

Jorunn Kirkeleit 1 collaboration

Eelco Kuijpers 1 collaboration

Nhung Nguyen 1 collaboration

Roberto Nuñez 1 collaboration

Vivi Schlünssen 1 collaboration

Zara Ann Stokholm 1 collaboration

Evana Amir Taher 1 collaboration

Håkan Tinnerberg 1 collaboration

Martie Van Tongeren 1 collaboration

Shaoxiong Ji 1 collaboration

Nusrat Husain 1 collaboration

Sehrish Tofique 1 collaboration

Imran B Chaudhry 1 collaboration

Tayyeba Kiran 1 collaboration

Peter Taylor 1 collaboration

Christopher Williams 1 collaboration

Rakhshi Memon 1 collaboration

Shilpa Aggarwal 1 collaboration

Mohsin Hassan Alvi 1 collaboration

S Ananiadou 1 collaboration

Moin Ahmad Ansari 1 collaboration

Saadia Aseem 1 collaboration

Andrew Beck 1 collaboration

Sumira Alam 1 collaboration

Erminia Colucci 1 collaboration

Kate Davidson 1 collaboration

Sarah Edwards 1 collaboration

Richard Emsley 1 collaboration

Jonathan Green 1 collaboration

Anil Gumber 1 collaboration

Keith Hawton 1 collaboration

Farhat Jafri 1 collaboration

Ayesha Khaliq 1 collaboration

Thomas Mason 1 collaboration

Ann Mcreath 1 collaboration

Ayesha Minhas 1 collaboration

Farooq Naeem 1 collaboration

Haider Ali Naqvi 1 collaboration

Amna Noureen 1 collaboration

Maria Panagioti 1 collaboration

Anita Patel 1 collaboration

Aaron Poppleton 1 collaboration

Tinevimbo Shiri 1 collaboration

Mima Simic 1 collaboration

Sarwat Sultan 1 collaboration

Asad Tamizuddin Nizami 1 collaboration

Zainab Zadeh 1 collaboration

Shehla Naeem Zafar 1 collaboration

Nasim Chaudhry 1 collaboration

Chrysoula Zerva 1 collaboration

Samuel Taylor 1 collaboration

Martie van Tongeren 1 collaboration

Sunil Kumar Sahu 1 collaboration

Ioannis Iliopoulos 1 collaboration

Antoine Danchin 1 collaboration

John Pa Ioannidis 1 collaboration

Peter D Katsikis 1 collaboration

Christos A Ouzounis 1 collaboration

Vasilis J Promponas 1 collaboration

Alexandra Bannach-Brown 1 collaboration

James Thomas 1 collaboration

Andrew S C Rice 1 collaboration

Jing Liao 1 collaboration

Malcolm Robert Macleod 1 collaboration

Ben Lambert 1 collaboration

Georgios Kontonatsios 1 collaboration

Matthias Mauch 1 collaboration

Theodore Kokkoris 1 collaboration

Matthew Jockers 1 collaboration

Kanix Wang 1 collaboration

Robert Stevens 1 collaboration

Halima Alachram 1 collaboration

Yu Li 1 collaboration

Larisa Soldatova 1 collaboration

Ross King 1 collaboration

José Luis Ambite 1 collaboration

Joel Matthew 1 collaboration

Sahil Garg 1 collaboration

Ulf Hermjakob 1 collaboration

Daniel Marcu 1 collaboration

Emily Sheng 1 collaboration

Tim Beißbarth 1 collaboration

Edgar Wingender 1 collaboration

Aram Galstyan 1 collaboration

Xin Gao 1 collaboration

Brendan Chambers 1 collaboration

Weidi Pan 1 collaboration

Bohdan B Khomtchouk 1 collaboration

James A Evans 1 collaboration

Andrey Rzhetsky 1 collaboration

Wael Abdelkader 1 collaboration

Tamara Navarro 1 collaboration

Rick Parrish 1 collaboration

Chris Cotoi 1 collaboration

Federico Germini 1 collaboration

Lori-Ann Linkins 1 collaboration

Alfonso Iorio 1 collaboration

R Brian Haynes 1 collaboration

Lingyang Chu 1 collaboration

Cynthia Lokker 1 collaboration

Khoa N A Duong 1 collaboration

Anh Nguyen 1 collaboration

Barbara Ferrara 1 collaboration

Elena Moizo 1 collaboration

Milena Mucci 1 collaboration

Nicola Pasculli 1 collaboration

Valentina Paola Plumari 1 collaboration

Margherita Tozzi 1 collaboration

Nicoletta Boffa 1 collaboration

Fabrizio D'Ascenzo 1 collaboration

Antonio De Sio 1 collaboration

Andrea Della Selva 1 collaboration

Giacomo Iapichino 1 collaboration

Nikola Bradić 1 collaboration

Marina Petrova 1 collaboration

Valery Likhvantsev 1 collaboration

Gabriele Finco 1 collaboration

Jiarun Cao 1 collaboration

Elke M van Veen 1 collaboration

Niels Peek 1 collaboration

Andrew G Renehan 1 collaboration

Prayag Tiwari 1 collaboration