Sergey Knyazev

Affiliations

Department of Computer Science and Georgia State University, Atlanta, Georgia, USA.

Publications (12)

Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations.

Journal of computational biology : a journal of computational molecular cell biology

Avec: Daniel Novikov , Sergey Knyazev , Mark Grinshpon , Pelin Icer , Pavel Skums , Alex Zelikovsky

Electronic health record signatures identify undiagnosed patients with common variable immunodeficiency disease.

Science translational medicine

Avec: Ruth Johnson , Alexis V Stephens , Rachel Mester , Sergey Knyazev , Lisa A Kohn , Malika K Freund , Leroy Bondhus , Brian L Hill , Tommer Schwarz , Noah Zaitlen , Valerie A Arboleda , Lisa A Bastarache , Bogdan Pasaniuc , Manish J Butte

From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering.

Journal of computational biology : a journal of computational molecular cell biology

Avec: Andrew Melnyk , Fatemeh Mohebbi , Sergey Knyazev , Bikram Sahoo , Roya Hosseini , Pavel Skums , Alex Zelikovsky , Murray Patterson

Using earth mover's distance for viral outbreak investigations.

BMC genomics

Avec: Andrew Melnyk , Sergey Knyazev , Fredrik Vannberg , Leonid Bunimovich , Pavel Skums , Alex Zelikovsky

Technology dictates algorithms: recent developments in read alignment.

Genome biology

Avec: Mohammed Alser , Jeremy Rotman , Dhrithi Deshpande , Kodi Taraszka , Huwenbo Shi , Pelin Icer Baykal , Harry Taegyun Yang , Victor Xue , Sergey Knyazev , Benjamin D Singer , Brunilda Balliu , David Koslicki , Pavel Skums , Alex Zelikovsky , Can Alkan , Onur Mutlu , Serghei Mangul

Creation and Use of Highly Adaptive Productive and Technological Red Currant Genotypes to Improve the Assortment and Introduction into Different Ecological and Geographical Zones.

Plants (Basel, Switzerland)

Avec: Olga Panfilova , Ibrahim Kahramanoğlu , Gabrijel Ondrasek , Volkan Okatan , Nelly Ryago , Mikhail Tsoy , Olga Golyaeva , Sergey Knyazev

The UCLA ATLAS Community Health Initiative: Promoting precision health research in a diverse biobank.

Cell genomics

Avec: Ruth Johnson , Yi Ding , Arjun Bhattacharya , Sergey Knyazev , Alec Chiu , Clara Lajonchere , Daniel H Geschwind , Bogdan Pasaniuc

Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria.

Viruses

Avec: Ivailo Alexiev , Ellsworth M Campbell , Sergey Knyazev , Yi Pan , Lyubomira Grigorova , Reneta Dimitrova , Aleksandra Partsuneva , Anna Gancheva , Asya Kostadinova , Carole Seguin-Devaux , William M Switzer

Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.

Briefings in bioinformatics

Avec: Sergey Knyazev , Lauren Hughes , Pavel Skums , Alexander Zelikovsky

Molecular Epidemiological Analysis of the Origin and Transmission Dynamics of the HIV-1 CRF01_AE Sub-Epidemic in Bulgaria.

Viruses

Avec: Ivailo Alexiev , Ellsworth M Campbell , Sergey Knyazev , Yi Pan , Lyubomira Grigorova , Reneta Dimitrova , Aleksandra Partsuneva , Anna Gancheva , Asya Kostadinova , Carole Seguin-Devaux , Ivaylo Elenkov , Nina Yancheva , William M Switzer

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.

Genome biology

Avec: Anthony Sonrel , Almut Luetge , Charlotte Soneson , Izaskun Mallona , Pierre-Luc Germain , Sergey Knyazev , Jeroen Gilis , Reto Gerber , Ruth Seurinck , Dominique Paul , Emanuel Sonder , Helena L Crowell , Imran Fanaswala , Ahmad Al-Ajami , Elyas Heidari , Stephan Schmeing , Stefan Milosavljevic , Yvan Saeys , Serghei Mangul , Mark D Robinson

Unlocking capacities of viral genomics for the COVID-19 pandemic response.

ArXiv

Avec: Sergey Knyazev , Karishma Chhugani , Varuni Sarwal , Ram Ayyala , Harman Singh , Smruthi Karthikeyan , Dhrithi Deshpande , Zoia Comarova , Angela Lu , Yuri Porozov , Aiping Wu , Malak S Abedalthagafi , Shivashankar H Nagaraj , Adam L Smith , Pavel Skums , Jason Ladner , Tommy Tsan-Yuk Lam , Nicholas C Wu , Alex Zelikovsky , Rob Knight , Keith A Crandall , Serghei Mangul

Réseau de co-auteurs

Pavel Skums 6 collaborations

Alex Zelikovsky 5 collaborations

Serghei Mangul 3 collaborations

Ruth Johnson 2 collaborations

Bogdan Pasaniuc 2 collaborations

Andrew Melnyk 2 collaborations

Dhrithi Deshpande 2 collaborations

Ivailo Alexiev 2 collaborations

Ellsworth M Campbell 2 collaborations

Yi Pan 2 collaborations

Lyubomira Grigorova 2 collaborations

Reneta Dimitrova 2 collaborations

Aleksandra Partsuneva 2 collaborations

Anna Gancheva 2 collaborations

Asya Kostadinova 2 collaborations

Carole Seguin-Devaux 2 collaborations

William M Switzer 2 collaborations

Daniel Novikov 1 collaboration

Mark Grinshpon 1 collaboration

Pelin Icer 1 collaboration

Alexis V Stephens 1 collaboration

Rachel Mester 1 collaboration

Lisa A Kohn 1 collaboration

Malika K Freund 1 collaboration

Leroy Bondhus 1 collaboration

Brian L Hill 1 collaboration

Tommer Schwarz 1 collaboration

Noah Zaitlen 1 collaboration

Valerie A Arboleda 1 collaboration

Lisa A Bastarache 1 collaboration

Manish J Butte 1 collaboration

Fatemeh Mohebbi 1 collaboration

Bikram Sahoo 1 collaboration

Roya Hosseini 1 collaboration

Murray Patterson 1 collaboration

Fredrik Vannberg 1 collaboration

Leonid Bunimovich 1 collaboration

Mohammed Alser 1 collaboration

Jeremy Rotman 1 collaboration

Kodi Taraszka 1 collaboration

Huwenbo Shi 1 collaboration

Pelin Icer Baykal 1 collaboration

Harry Taegyun Yang 1 collaboration

Victor Xue 1 collaboration

Benjamin D Singer 1 collaboration

Brunilda Balliu 1 collaboration

David Koslicki 1 collaboration

Can Alkan 1 collaboration

Onur Mutlu 1 collaboration

Olga Panfilova 1 collaboration

Ibrahim Kahramanoğlu 1 collaboration

Gabrijel Ondrasek 1 collaboration

Volkan Okatan 1 collaboration

Nelly Ryago 1 collaboration

Mikhail Tsoy 1 collaboration

Olga Golyaeva 1 collaboration

Yi Ding 1 collaboration

Arjun Bhattacharya 1 collaboration

Alec Chiu 1 collaboration

Clara Lajonchere 1 collaboration

Daniel H Geschwind 1 collaboration

Lauren Hughes 1 collaboration

Alexander Zelikovsky 1 collaboration

Ivaylo Elenkov 1 collaboration

Nina Yancheva 1 collaboration

Anthony Sonrel 1 collaboration

Almut Luetge 1 collaboration

Charlotte Soneson 1 collaboration

Izaskun Mallona 1 collaboration

Pierre-Luc Germain 1 collaboration

Jeroen Gilis 1 collaboration

Reto Gerber 1 collaboration

Ruth Seurinck 1 collaboration

Dominique Paul 1 collaboration

Emanuel Sonder 1 collaboration

Helena L Crowell 1 collaboration

Imran Fanaswala 1 collaboration

Ahmad Al-Ajami 1 collaboration

Elyas Heidari 1 collaboration

Stephan Schmeing 1 collaboration

Stefan Milosavljevic 1 collaboration

Yvan Saeys 1 collaboration

Mark D Robinson 1 collaboration

Karishma Chhugani 1 collaboration

Varuni Sarwal 1 collaboration

Ram Ayyala 1 collaboration

Harman Singh 1 collaboration

Smruthi Karthikeyan 1 collaboration

Zoia Comarova 1 collaboration

Angela Lu 1 collaboration

Yuri Porozov 1 collaboration

Aiping Wu 1 collaboration

Malak S Abedalthagafi 1 collaboration

Shivashankar H Nagaraj 1 collaboration

Adam L Smith 1 collaboration

Jason Ladner 1 collaboration

Tommy Tsan-Yuk Lam 1 collaboration

Nicholas C Wu 1 collaboration

Rob Knight 1 collaboration

Keith A Crandall 1 collaboration