Remus Thei Dame

Affiliations

Leiden Institute of Chemistry, Leiden University, 2333 CC Leiden, The Netherlands.
Centre for Microbial Cell Biology, Leiden University, 2333 CC Leiden, The Netherlands.

ORCID: 0000-0001-9863-1692

Publications (30)

Identification, characterization and classification of prokaryotic nucleoid-associated proteins.

Molecular microbiology

Avec: Samuel Schwab , Remus T Dame

Unravelling DNA Organization with Single-Molecule Force Spectroscopy Using Magnetic Tweezers.

Methods in molecular biology (Clifton, N.J.)

Avec: Thomas B Brouwer , Artur Kaczmarczyk , Ilias Zarguit , Chi Pham , Remus T Dame , John van Noort

Histones and histone variant families in prokaryotes.

Nature communications

Avec: Samuel Schwab , Yimin Hu , Bert van Erp , Marc K M Cajili , Marcus D Hartmann , Birte Hernandez Alvarez , Vikram Alva , Aimee L Boyle , Remus T Dame

Ruthenium-Locked Helical Chirality: A Barrier of Inversion and Formation of an Asymmetric Macrocycle.

Inorganic chemistry

Avec: Corjan van de Griend , Johannes J van de Vijver , Maxime A Siegler , Remus T Dame , Sylvestre Bonnet

2024: A "nucleoid space" odyssey featuring H-NS.

BioEssays : news and reviews in molecular, cellular and developmental biology

Avec: Fatema-Zahra M Rashid , Remus T Dame

Chromosome organization in bacteria: mechanistic insights into genome structure and function.

Nature reviews. Genetics

Avec: Remus T Dame , Fatema-Zahra M Rashid , David C Grainger

Effect of Different Crowding Agents on the Architectural Properties of the Bacterial Nucleoid-Associated Protein HU.

International journal of molecular sciences

Avec: Szu-Ning Lin , Gijs J L Wuite , Remus T Dame

Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.

Journal of molecular biology

Avec: Andrew I Jewett , David Stelter , Jason Lambert , Shyam M Saladi , Otello M Roscioni , Matteo Ricci , Ludovic Autin , Martina Maritan , Saeed M Bashusqeh , Tom Keyes , Remus T Dame , Joan-Emma Shea , Grant J Jensen , David S Goodsell

Direct visualization of the effect of DNA structure and ionic conditions on HU-DNA interactions.

Scientific reports

Avec: Szu-Ning Lin , Remus T Dame , Gijs J L Wuite

Special Issue: Role of Bacterial Chromatin in Environmental Sensing, Adaptation and Evolution.

Microorganisms

Avec: Remus T Dame

System-Wide Analysis of the GATC-Binding Nucleoid-Associated Protein Gbn and Its Impact on

mSystems

Avec: Chao Du , Joost Willemse , Amanda M Erkelens , Victor J Carrion , Remus T Dame , Gilles P van Wezel

Three-dimensional chromosome re-modelling: The integral mechanism of transcription regulation in bacteria.

Molecular microbiology

Avec: Fatema-Zahra M Rashid , Remus T Dame

MucR from

International journal of molecular sciences

Avec: Martina Slapakova , Domenico Sgambati , Luciano Pirone , Veronica Russo , Gianluca D'Abrosca , Mariangela Valletta , Rosita Russo , Angela Chambery , Gaetano Malgieri , Emilia Maria Pedone , Remus Thei Dame , Paolo Vincenzo Pedone , Ilaria Baglivo

Rok from B. subtilis: Bridging genome structure and transcription regulation.

Molecular microbiology

Avec: Amanda M Erkelens , Bert van Erp , Wilfried J J Meijer , Remus T Dame

Stress-induced adaptive morphogenesis in bacteria.

Advances in microbial physiology

Avec: Eveline Ultee , Karina Ramijan , Remus T Dame , Ariane Briegel , Dennis Claessen

The architects of bacterial DNA bridges: a structurally and functionally conserved family of proteins.

Open biology

Avec: L Qin , A M Erkelens , F Ben Bdira , R T Dame

HI-NESS: a family of genetically encoded DNA labels based on a bacterial nucleoid-associated protein.

Nucleic acids research

Avec: Fatema-Zahra M Rashid , Eike Mahlandt , Michiel van der Vaart , Daphne E C Boer , Monica Varela Alvarez , Bram Henneman , Daan J W Brocken , Patrick Voskamp , Anneloes J Blok , Thomas S Shimizu , Annemarie H Meijer , Martijn S Luijsterburg , Joachim Goedhart , Frédéric G E Crémazy , Remus T Dame

Mechanical and structural properties of archaeal hypernucleosomes.

Nucleic acids research

Avec: Bram Henneman , Thomas B Brouwer , Amanda M Erkelens , Gert-Jan Kuijntjes , Clara van Emmerik , Ramon A van der Valk , Monika Timmer , Nancy C S Kirolos , Hugo van Ingen , John van Noort , Remus T Dame

Specific DNA binding of archaeal histones HMfA and HMfB.

Frontiers in microbiology

Avec: Amanda M Erkelens , Bram Henneman , Ramon A van der Valk , Nancy C S Kirolos , Remus T Dame

Chromosome Conformation Capture in Bacteria and Archaea.

Methods in molecular biology (Clifton, N.J.)

Avec: Fatema-Zahra M Rashid , Laurien Detmar , Remus T Dame

Unravelling the Biophysical Properties of Chromatin Proteins and DNA Using Acoustic Force Spectroscopy.

Methods in molecular biology (Clifton, N.J.)

Avec: Szu-Ning Lin , Liang Qin , Kees-Karel H Taris , Gijs J L Wuite , Remus T Dame

Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins.

Nucleic acids research

Avec: Liang Qin , Fredj Ben Bdira , Yann G J Sterckx , Alexander N Volkov , Jocelyne Vreede , Gabriele Giachin , Peter van Schaik , Marcellus Ubbink , Remus T Dame

Novel anti-repression mechanism of H-NS proteins by a phage protein.

Nucleic acids research

Avec: Fredj Ben Bdira , Amanda M Erkelens , Liang Qin , Alexander N Volkov , Andrew M Lippa , Nicholas Bowring , Aimee L Boyle , Marcellus Ubbink , Simon L Dove , Remus T Dame

DNA-bridging by an archaeal histone variant via a unique tetramerisation interface.

Communications biology

Avec: Sapir Ofer , Fabian Blombach , Amanda M Erkelens , Declan Barker , Zoja Soloviev , Samuel Schwab , Katherine Smollett , Dorota Matelska , Thomas Fouqueau , Nico van der Vis , Nicholas A Kent , Konstantinos Thalassinos , Remus T Dame , Finn Werner

ChIP-qPCR of FLAG-Tagged Proteins in Bacteria.

Methods in molecular biology (Clifton, N.J.)

Avec: Pingzhuang Ge , Fatema-Zahra M Rashid , Frédéric G E Crémazy , Remus T Dame

Microscale Thermophoresis Analysis of Chromatin Interactions.

Methods in molecular biology (Clifton, N.J.)

Avec: Ivan Corbeski , Velten Horn , Ramon A van der Valk , Ulric le Paige , Remus T Dame , Hugo van Ingen

Quantitative Determination of DNA Bridging Efficiency of Chromatin Proteins.

Methods in molecular biology (Clifton, N.J.)

Avec: Ramon A van der Valk , Bert van Erp , Liang Qin , Geri F Moolenaar , Remus T Dame

The Bacterial Chromatin Protein HupA Can Remodel DNA and Associates with the Nucleoid in Clostridium difficile.

Journal of molecular biology

Avec: Ana M Oliveira Paiva , Annemieke H Friggen , Liang Qin , Roxanne Douwes , Remus T Dame , Wiep Klaas Smits

Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps.

Frontiers in molecular biosciences

Avec: Benjamin R Gilbert , Zane R Thornburg , Vinson Lam , Fatema-Zahra M Rashid , John I Glass , Elizabeth Villa , Remus T Dame , Zaida Luthey-Schulten

Xenogeneic silencing strategies in bacteria are dictated by RNA polymerase promiscuity.

Nature communications

Avec: David Forrest , Emily A Warman , Amanda M Erkelens , Remus T Dame , David C Grainger

Réseau de co-auteurs

Remus T Dame 28 collaborations

Fatema-Zahra M Rashid 7 collaborations

Amanda M Erkelens 7 collaborations

Liang Qin 5 collaborations

Ramon A van der Valk 4 collaborations

Samuel Schwab 3 collaborations

Bert van Erp 3 collaborations

Szu-Ning Lin 3 collaborations

Gijs J L Wuite 3 collaborations

Bram Henneman 3 collaborations

Thomas B Brouwer 2 collaborations

John van Noort 2 collaborations

Aimee L Boyle 2 collaborations

David C Grainger 2 collaborations

Frédéric G E Crémazy 2 collaborations

Nancy C S Kirolos 2 collaborations

Hugo van Ingen 2 collaborations

Fredj Ben Bdira 2 collaborations

Alexander N Volkov 2 collaborations

Marcellus Ubbink 2 collaborations

Artur Kaczmarczyk 1 collaboration

Ilias Zarguit 1 collaboration

Chi Pham 1 collaboration

Yimin Hu 1 collaboration

Marc K M Cajili 1 collaboration

Marcus D Hartmann 1 collaboration

Birte Hernandez Alvarez 1 collaboration

Vikram Alva 1 collaboration

Corjan van de Griend 1 collaboration

Johannes J van de Vijver 1 collaboration

Maxime A Siegler 1 collaboration

Sylvestre Bonnet 1 collaboration

Andrew I Jewett 1 collaboration

David Stelter 1 collaboration

Jason Lambert 1 collaboration

Shyam M Saladi 1 collaboration

Otello M Roscioni 1 collaboration

Matteo Ricci 1 collaboration

Ludovic Autin 1 collaboration

Martina Maritan 1 collaboration

Saeed M Bashusqeh 1 collaboration

Tom Keyes 1 collaboration

Joan-Emma Shea 1 collaboration

Grant J Jensen 1 collaboration

David S Goodsell 1 collaboration

Chao Du 1 collaboration

Joost Willemse 1 collaboration

Victor J Carrion 1 collaboration

Gilles P van Wezel 1 collaboration

Martina Slapakova 1 collaboration

Domenico Sgambati 1 collaboration

Luciano Pirone 1 collaboration

Veronica Russo 1 collaboration

Gianluca D'Abrosca 1 collaboration

Mariangela Valletta 1 collaboration

Rosita Russo 1 collaboration

Angela Chambery 1 collaboration

Gaetano Malgieri 1 collaboration

Emilia Maria Pedone 1 collaboration

Paolo Vincenzo Pedone 1 collaboration

Ilaria Baglivo 1 collaboration

Wilfried J J Meijer 1 collaboration

Eveline Ultee 1 collaboration

Karina Ramijan 1 collaboration

Ariane Briegel 1 collaboration

Dennis Claessen 1 collaboration

L Qin 1 collaboration

A M Erkelens 1 collaboration

F Ben Bdira 1 collaboration

R T Dame 1 collaboration

Eike Mahlandt 1 collaboration

Michiel van der Vaart 1 collaboration

Daphne E C Boer 1 collaboration

Monica Varela Alvarez 1 collaboration

Daan J W Brocken 1 collaboration

Patrick Voskamp 1 collaboration

Anneloes J Blok 1 collaboration

Thomas S Shimizu 1 collaboration

Annemarie H Meijer 1 collaboration

Martijn S Luijsterburg 1 collaboration

Joachim Goedhart 1 collaboration

Gert-Jan Kuijntjes 1 collaboration

Clara van Emmerik 1 collaboration

Monika Timmer 1 collaboration

Laurien Detmar 1 collaboration

Kees-Karel H Taris 1 collaboration

Yann G J Sterckx 1 collaboration

Jocelyne Vreede 1 collaboration

Gabriele Giachin 1 collaboration

Peter van Schaik 1 collaboration

Andrew M Lippa 1 collaboration

Nicholas Bowring 1 collaboration

Simon L Dove 1 collaboration

Sapir Ofer 1 collaboration

Fabian Blombach 1 collaboration

Declan Barker 1 collaboration

Zoja Soloviev 1 collaboration

Katherine Smollett 1 collaboration

Dorota Matelska 1 collaboration

Thomas Fouqueau 1 collaboration

Nico van der Vis 1 collaboration

Nicholas A Kent 1 collaboration

Konstantinos Thalassinos 1 collaboration

Finn Werner 1 collaboration

Pingzhuang Ge 1 collaboration

Ivan Corbeski 1 collaboration

Velten Horn 1 collaboration

Ulric le Paige 1 collaboration

Geri F Moolenaar 1 collaboration

Ana M Oliveira Paiva 1 collaboration

Annemieke H Friggen 1 collaboration

Roxanne Douwes 1 collaboration

Wiep Klaas Smits 1 collaboration

Benjamin R Gilbert 1 collaboration

Zane R Thornburg 1 collaboration

Vinson Lam 1 collaboration

John I Glass 1 collaboration

Elizabeth Villa 1 collaboration

Zaida Luthey-Schulten 1 collaboration

David Forrest 1 collaboration

Emily A Warman 1 collaboration