Piotr Bonarek

Affiliations

Department of Physical Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland. Electronic address: piotr.bonarek@uj.edu.pl.

Publications (19)

Probing the ligand-binding pocket of recombinant β-lactoglobulin: Calorimetric and spectroscopic studies.

Biophysical chemistry

Avec: Piotr Bonarek , Dorota Mularczyk , Joanna Loch , Marta Dziedzicka-Wasylewska

DNA aptamer-based affinity chromatography system for purification of recombinant proteins tagged with lysine tag.

Journal of chromatography. A

Avec: Klaudia Arciszewska , Ewa Kowalska , Filip Bartnicki , Piotr Bonarek , Agnieszka Katarzyna Banaś , Wojciech Strzałka

Conformational flexibility and ligand binding properties of ovine β-lactoglobulin.

Acta biochimica Polonica

Avec: Joanna Loch , Piotr Bonarek , Krzysztof Lewiński

Structural and biophysical studies of new L-asparaginase variants: lessons from random mutagenesis of the prototypic Escherichia coli Ntn-amidohydrolase.

Acta crystallographica. Section D, Structural biology

Avec: Joanna I Loch , Agnieszka Klonecka , Kinga Kądziołka , Piotr Bonarek , Jakub Barciszewski , Barbara Imiolczyk , Krzysztof Brzezinski , Mirosław Gilski , Mariusz Jaskolski

β-Lactoglobulin variants as potential carriers of pramoxine: Comprehensive structural and biophysical studies.

Journal of molecular recognition : JMR

Avec: Piotr Bonarek , Dorota Mularczyk , Joanna I Loch , Katarzyna Kurpiewska , Marta Dziedzicka-Wasylewska

Can di-4-ANEPPDHQ reveal the structural differences between nanodiscs and liposomes?

Biochimica et biophysica acta. Biomembranes

Avec: Anna Chmielińska , Piotr Stepien , Piotr Bonarek , Mykhailo Girych , Giray Enkavi , Tomasz Rog , Marta Dziedzicka-Wasylewska , Agnieszka Polit

Structure-based design approach to rational site-directed mutagenesis of β-lactoglobulin.

Journal of structural biology

Avec: Piotr Bonarek , Joanna I Loch , Magdalena Tworzydło , David R Cooper , Katažyna Milto , Paulina Wróbel , Katarzyna Kurpiewska , Krzysztof Lewiński

The Use of a Barley-Based Well to Define Cationic Betaglucan to Study Mammalian Cell Toxicity Associated with Interactions with Biological Structures.

Pharmaceutics

Avec: Malgorzata Tymecka , Katarzyna Hac-Wydro , Magdalena Obloza , Piotr Bonarek , Kamil Kaminski

Biological Properties of Heparins Modified with an Arylazopyrazole-Based Photoswitch.

Journal of medicinal chemistry

Avec: Marta Stolarek , Aleksandra Pycior , Piotr Bonarek , Małgorzata Opydo , Elzbieta Kolaczkowska , Kamil Kamiński , Andrzej Mogielnicki , Krzysztof Szczubiałka

pH-Induced Changes in Polypeptide Conformation: Force-Field Comparison with Experimental Validation.

The journal of physical chemistry. B

Avec: Piotr Batys , Maria Morga , Piotr Bonarek , Maria Sammalkorpi

Interactions of new lactoglobulin variants with tetracaine: crystallographic studies of ligand binding to lactoglobulin mutants possessing single substitution in the binding pocket.

Acta biochimica Polonica

Avec: Joanna Loch , Piotr Bonarek , Monika Siuda , Paulina Wróbel , Krzysztof Lewiński

Poly-L-Arginine Molecule Properties in Simple Electrolytes: Molecular Dynamic Modeling and Experiments.

International journal of environmental research and public health

Avec: Maria Morga , Piotr Batys , Dominik Kosior , Piotr Bonarek , Zbigniew Adamczyk

Synthesis, Biological Evaluation and Reversal of Sulfonated Di- and Triblock Copolymers as Novel Parenteral Anticoagulants.

Advanced healthcare materials

Avec: Justyna Swieton , Joanna Miklosz , Natalia Bielicka , Aleksandra Frackiewicz , Karol Depczynski , Marta Stolarek , Piotr Bonarek , Kamil Kaminski , Piotr Rozga , Shin-Ichi Yusa , Anna Gromotowicz-Poplawska , Krzysztof Szczubialka , Dariusz Pawlak , Andrzej Mogielnicki , Bartlomiej Kalaska

New ligand-binding sites identified in the crystal structures of β-lactoglobulin complexes with desipramine.

IUCrJ

Avec: Joanna I Loch , Jakub Barciszewski , Joanna Śliwiak , Piotr Bonarek , Paulina Wróbel , Kinga Pokrywka , Ivan G Shabalin , Wladek Minor , Mariusz Jaskolski , Krzysztof Lewiński

pH dependence of the assembly mechanism and properties of poly(L-lysine) and poly(L-glutamic acid) complexes.

Physical chemistry chemical physics : PCCP

Avec: Tuuva Kastinen , Dawid Lupa , Piotr Bonarek , Dmitrii Fedorov , Maria Morga , Markus B Linder , Jodie L Lutkenhaus , Piotr Batys , Maria Sammalkorpi

Zinc controls operator affinity of human transcription factor YY1 by mediating dimerization via its N-terminal region.

Biochimica et biophysica acta. Gene regulatory mechanisms

Avec: Małgorzata Figiel , Filip Szubert , Enrico Luchinat , Piotr Bonarek , Anna Baranowska , Katarzyna Wajda-Nikiel , Mateusz Wilamowski , Piotr Miłek , Marta Dziedzicka-Wasylewska , Lucia Banci , Andrzej Górecki

Poly(ethylene glycol)

ACS omega

Avec: Paweł Botwina , Magdalena Obłoza , Piotr Bonarek , Krzysztof Szczubiałka , Krzysztof Pyrć , Maria Nowakowska

Curcumin-Poly(sodium 4-styrenesulfonate) Conjugates as Potent Zika Virus Entry Inhibitors.

ACS applied materials & interfaces

Avec: Magdalena Obłoza , Aleksandra Milewska , Paweł Botwina , Artur Szczepański , Aneta Medaj , Piotr Bonarek , Krzysztof Szczubiałka , Krzysztof Pyrć , Maria Nowakowska

Light-Controlled Anticancer Activity and Cellular Uptake of a Photoswitchable Cisplatin Analogue.

Journal of medicinal chemistry

Avec: Marta Stolarek , Kamil Kaminski , Marta Kaczor-Kamińska , Magdalena Obłoza , Piotr Bonarek , Anna Czaja , Magdalena Datta , Wojciech Łach , Mateusz Brela , Artur Sikorski , Janusz Rak , Maria Nowakowska , Krzysztof Szczubiałka

Réseau de co-auteurs

Marta Dziedzicka-Wasylewska 4 collaborations

Krzysztof Lewiński 4 collaborations

Joanna I Loch 4 collaborations

Krzysztof Szczubiałka 4 collaborations

Joanna Loch 3 collaborations

Paulina Wróbel 3 collaborations

Kamil Kaminski 3 collaborations

Marta Stolarek 3 collaborations

Piotr Batys 3 collaborations

Maria Morga 3 collaborations

Magdalena Obłoza 3 collaborations

Maria Nowakowska 3 collaborations

Dorota Mularczyk 2 collaborations

Jakub Barciszewski 2 collaborations

Mariusz Jaskolski 2 collaborations

Katarzyna Kurpiewska 2 collaborations

Andrzej Mogielnicki 2 collaborations

Maria Sammalkorpi 2 collaborations

Paweł Botwina 2 collaborations

Krzysztof Pyrć 2 collaborations

Klaudia Arciszewska 1 collaboration

Ewa Kowalska 1 collaboration

Filip Bartnicki 1 collaboration

Agnieszka Katarzyna Banaś 1 collaboration

Wojciech Strzałka 1 collaboration

Agnieszka Klonecka 1 collaboration

Kinga Kądziołka 1 collaboration

Barbara Imiolczyk 1 collaboration

Krzysztof Brzezinski 1 collaboration

Mirosław Gilski 1 collaboration

Anna Chmielińska 1 collaboration

Piotr Stepien 1 collaboration

Mykhailo Girych 1 collaboration

Giray Enkavi 1 collaboration

Tomasz Rog 1 collaboration

Agnieszka Polit 1 collaboration

Magdalena Tworzydło 1 collaboration

David R Cooper 1 collaboration

Katažyna Milto 1 collaboration

Malgorzata Tymecka 1 collaboration

Katarzyna Hac-Wydro 1 collaboration

Magdalena Obloza 1 collaboration

Aleksandra Pycior 1 collaboration

Małgorzata Opydo 1 collaboration

Elzbieta Kolaczkowska 1 collaboration

Kamil Kamiński 1 collaboration

Monika Siuda 1 collaboration

Dominik Kosior 1 collaboration

Zbigniew Adamczyk 1 collaboration

Justyna Swieton 1 collaboration

Joanna Miklosz 1 collaboration

Natalia Bielicka 1 collaboration

Aleksandra Frackiewicz 1 collaboration

Karol Depczynski 1 collaboration

Piotr Rozga 1 collaboration

Shin-Ichi Yusa 1 collaboration

Anna Gromotowicz-Poplawska 1 collaboration

Krzysztof Szczubialka 1 collaboration

Dariusz Pawlak 1 collaboration

Bartlomiej Kalaska 1 collaboration

Joanna Śliwiak 1 collaboration

Kinga Pokrywka 1 collaboration

Ivan G Shabalin 1 collaboration

Wladek Minor 1 collaboration

Tuuva Kastinen 1 collaboration

Dawid Lupa 1 collaboration

Dmitrii Fedorov 1 collaboration

Markus B Linder 1 collaboration

Jodie L Lutkenhaus 1 collaboration

Małgorzata Figiel 1 collaboration

Filip Szubert 1 collaboration

Enrico Luchinat 1 collaboration

Anna Baranowska 1 collaboration

Katarzyna Wajda-Nikiel 1 collaboration

Mateusz Wilamowski 1 collaboration

Piotr Miłek 1 collaboration

Lucia Banci 1 collaboration

Andrzej Górecki 1 collaboration

Aleksandra Milewska 1 collaboration

Artur Szczepański 1 collaboration

Aneta Medaj 1 collaboration

Marta Kaczor-Kamińska 1 collaboration

Anna Czaja 1 collaboration

Magdalena Datta 1 collaboration

Wojciech Łach 1 collaboration

Mateusz Brela 1 collaboration

Artur Sikorski 1 collaboration

Janusz Rak 1 collaboration