P Andrew Futreal

Affiliations
  • Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.

Publications (46)

Molecular Analysis of Clinically Defined Subsets of High-Grade Serous Ovarian Cancer.

Cell reports
Avec: Sanghoon Lee , Li Zhao , Christine Rojas , Nicholas W Bateman , Hui Yao , Olivia D Lara , Joseph Celestino , Margaret B Morgan , Tri V Nguyen , Kelly A Conrads , Kelly M Rangel , Robert L Dood , Richard A Hajek , Gloria L Fawcett , Randy A Chu , Katlin Wilson , Jeremy L Loffredo , Coralie Viollet , Amir A Jazaeri , Clifton L Dalgard , Xizeng Mao , Xingzhi Song , Ming Zhou , Brian L Hood , Nirad Banskota , Matthew D Wilkerson , Jerez Te , Anthony R Soltis , Kristin Roman , Andrew Dunn , David Cordover , Agda Karina Eterovic , Jinsong Liu , Jared K Burks , Keith A Baggerly , Nicole D Fleming , Karen H Lu , Shannon N Westin , Robert L Coleman , Gordon B Mills , Yovanni Casablanca , Jianhua Zhang , Thomas P Conrads , George L Maxwell , P Andrew Futreal , Anil K Sood

Deep sequencing of circulating tumor DNA detects molecular residual disease and predicts recurrence in gastric cancer.

Cell death & disease
Avec: Jian Yang , Yuhua Gong , Vincent K Lam , Yan Shi , Yanfang Guan , Yanyan Zhang , Liyan Ji , Yongsheng Chen , Yongliang Zhao , Feng Qian , Jun Chen , Pingang Li , Fan Zhang , Jiayin Wang , Xuanping Zhang , Ling Yang , Scott Kopetz , P Andrew Futreal , Jianjun Zhang , Xin Yi , Xuefeng Xia , Peiwu Yu

Distinct co-acquired alterations and genomic evolution during TKI treatment in non-small-cell lung cancer patients with or without acquired T790M mutation.

Oncogene
Avec: Ying Jin , Hua Bao , Xiuning Le , Xiaojun Fan , Ming Tang , Xun Shi , Jun Zhao , Junrong Yan , Yang Xu , Kelly Quek , Yasir Y Elamin , Jianhua Zhang , P Andrew Futreal , Ignacio I Wistuba , John V Heymach , Guangyuan Lou , Lan Shao , Qiong He , Chen Lin , Xue Wu , Yang W Shao , Xiaonan Wang , Jiachen He , Yamei Chen , Justin Stebbing , Ming Chen , Jianjun Zhang , Xinmin Yu

Features of non-activation dendritic state and immune deficiency in blastic plasmacytoid dendritic cell neoplasm (BPDCN).

Blood cancer journal
Avec: Hannah C Beird , Maliha Khan , Feng Wang , Mansour Alfayez , Tianyu Cai , Li Zhao , Joseph Khoury , P Andrew Futreal , Marina Konopleva , Naveen Pemmaraju

Molecular Profiling Reveals Unique Immune and Metabolic Features of Melanoma Brain Metastases.

Cancer discovery
Avec: Grant M Fischer , Ali Jalali , David A Kircher , Won-Chul Lee , Jennifer L McQuade , Lauren E Haydu , Aron Y Joon , Alexandre Reuben , Mariana P de Macedo , Fernando C L Carapeto , Chendong Yang , Anuj Srivastava , Chandrashekar R Ambati , Arun Sreekumar , Courtney W Hudgens , Barbara Knighton , Wanleng Deng , Sherise D Ferguson , Hussein A Tawbi , Isabella C Glitza , Jeffrey E Gershenwald , Y N Vashisht Gopal , Patrick Hwu , Jason T Huse , Jennifer A Wargo , P Andrew Futreal , Nagireddy Putluri , Alexander J Lazar , Ralph J DeBerardinis , Joseph R Marszalek , Jianjun Zhang , Sheri L Holmen , Michael T Tetzlaff , Michael A Davies

Multiomics profiling of primary lung cancers and distant metastases reveals immunosuppression as a common characteristic of tumor cells with metastatic plasticity.

Genome biology
Avec: Won-Chul Lee , Alexandre Reuben , Xin Hu , Nicholas McGranahan , Runzhe Chen , Ali Jalali , Marcelo V Negrao , Shawna M Hubert , Chad Tang , Chia-Chin Wu , Anthony San Lucas , Whijae Roh , Kenichi Suda , Jihye Kim , Aik-Choon Tan , David H Peng , Wei Lu , Ximing Tang , Chi-Wan Chow , Junya Fujimoto , Carmen Behrens , Neda Kalhor , Kazutaka Fukumura , Marcus Coyle , Rebecca Thornton , Curtis Gumbs , Jun Li , Chang-Jiun Wu , Latasha Little , Emily Roarty , Xingzhi Song , J Jack Lee , Erik P Sulman , Ganesh Rao , Stephen Swisher , Lixia Diao , Jing Wang , John V Heymach , Jason T Huse , Paul Scheet , Ignacio I Wistuba , Don L Gibbons , P Andrew Futreal , Jianhua Zhang , Daniel Gomez , Jianjun Zhang

Publisher Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.

Nature communications
Avec: Kiyomi Morita , Feng Wang , Katharina Jahn , Tianyuan Hu , Tomoyuki Tanaka , Yuya Sasaki , Jack Kuipers , Sanam Loghavi , Sa A Wang , Yuanqing Yan , Ken Furudate , Jairo Matthews , Latasha Little , Curtis Gumbs , Jianhua Zhang , Xingzhi Song , Erika Thompson , Keyur P Patel , Carlos E Bueso-Ramos , Courtney D DiNardo , Farhad Ravandi , Elias Jabbour , Michael Andreeff , Jorge Cortes , Kapil Bhalla , Guillermo Garcia-Manero , Hagop Kantarjian , Marina Konopleva , Daisuke Nakada , Nicholas Navin , Niko Beerenwinkel , P Andrew Futreal , Koichi Takahashi

Neoadjuvant Chemotherapy Increases Cytotoxic T Cell, Tissue Resident Memory T Cell, and B Cell Infiltration in Resectable NSCLC.

Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer
Avec: Pierre-Olivier Gaudreau , Marcelo V Negrao , Kyle G Mitchell , Alexandre Reuben , Erin M Corsini , Jun Li , Tatiana V Karpinets , Qi Wang , Lixia Diao , Jing Wang , Lorenzo Federico , Edwin R Parra-Cuentas , Roohussaba Khairullah , Carmen Behrens , Arlene M Correa , Daniel Gomez , Latasha Little , Curtis Gumbs , Humam N Kadara , Junya Fujimoto , Daniel J McGrail , Ara A Vaporciyan , Stephen G Swisher , Garrett Walsh , Mara B Antonoff , Annikka Weissferdt , Hai Tran , Emily Roarty , Cara Haymaker , Chantale Bernatchez , Jianhua Zhang , P Andrew Futreal , Ignacio I Wistuba , Tina Cascone , John V Heymach , Boris Sepesi , Jianjun Zhang , Don L Gibbons

Distinct T cell receptor repertoire diversity of clinically defined high-grade serous ovarian cancer treatment subgroups.

iScience
Avec: Sanghoon Lee , Li Zhao , Latasha D Little , Shannon N Westin , Amir A Jazarei , Nicole D Fleming , Jianhua Zhang , P Andrew Futreal , Anil K Sood

Proteogenomic Analysis of Salivary Adenoid Cystic Carcinomas Defines Molecular Subtypes and Identifies Therapeutic Targets.

Clinical cancer research : an official journal of the American Association for Cancer Research
Avec: Renata Ferrarotto , Yoshitsugu Mitani , Daniel J McGrail , Kaiyi Li , Tatiana V Karpinets , Diana Bell , Steven J Frank , Xingzhi Song , Michael E Kupferman , Bin Liu , J Jack Lee , Bonnie S Glisson , Jianhua Zhang , Jon C Aster , Shiaw-Yih Lin , P Andrew Futreal , John V Heymach , Adel K El-Naggar

Clonal dynamics and clinical implications of postremission clonal hematopoiesis in acute myeloid leukemia.

Blood
Avec: Tomoyuki Tanaka , Kiyomi Morita , Sanam Loghavi , Feng Wang , Ken Furudate , Yuya Sasaki , Latasha Little , Curtis Gumbs , Jairo Matthews , Naval Daver , Naveen Pemmaraju , Courtney D DiNardo , Koji Sasaki , Musa Yilmaz , Tapan M Kadia , Farhad Ravandi , Marina Y Konopleva , Hagop M Kantarjian , Richard E Champlin , Gheath Al-Atrash , Guillermo Garcia-Manero , Sa A Wang , P Andrew Futreal , Koichi Takahashi

Evolution of DNA methylome from precancerous lesions to invasive lung adenocarcinomas.

Nature communications
Avec: Xin Hu , Marcos R Estecio , Runzhe Chen , Alexandre Reuben , Linghua Wang , Junya Fujimoto , Jian Carrot-Zhang , Nicholas McGranahan , Lisha Ying , Junya Fukuoka , Chi-Wan Chow , Hoa H N Pham , Myrna C B Godoy , Brett W Carter , Carmen Behrens , Jianhua Zhang , Mara B Antonoff , Boris Sepesi , Yue Lu , Harvey I Pass , Humam Kadara , Paul Scheet , Ara A Vaporciyan , John V Heymach , Ignacio I Wistuba , J Jack Lee , P Andrew Futreal , Dan Su , Jean-Pierre J Issa , Jianjun Zhang

Assessment of Clinical Response Following Atezolizumab and Bevacizumab Treatment in Patients With Neuroendocrine Tumors: A Nonrandomized Clinical Trial.

JAMA oncology
Avec: Daniel M Halperin , Suyu Liu , Arvind Dasari , David Fogelman , Priya Bhosale , Armeen Mahvash , Jeannelyn S Estrella , Laura Rubin , Ajaykumar C Morani , Mark Knafl , Tim A Overeem , Szu-Chin Fu , Luisa M Solis , Edwin Parra Cuentas , Anuj Verma , Hong-Lei Chen , Swati Gite , Priya Subashchandrabose , Shannon Dervin , Katja Schulze , Walter C Darbonne , Cindy Yun , Ignacio I Wistuba , P Andrew Futreal , Scott E Woodman , James C Yao

Androgen receptor blockade promotes response to BRAF/MEK-targeted therapy.

Nature
Avec: Christopher P Vellano , Michael G White , Miles C Andrews , Manoj Chelvanambi , Russell G Witt , Joseph R Daniele , Mark Titus , Jennifer L McQuade , Fabio Conforti , Elizabeth M Burton , Matthew J Lastrapes , Gabriel Ologun , Alexandria P Cogdill , Golnaz Morad , Peter Prieto , Alexander J Lazar , Yanshuo Chu , Guangchun Han , M A Wadud Khan , Beth Helmink , Michael A Davies , Rodabe N Amaria , Jeffrey J Kovacs , Scott E Woodman , Sapna Patel , Patrick Hwu , Michael Peoples , Jeffrey E Lee , Zachary A Cooper , Haifeng Zhu , Guang Gao , Hiya Banerjee , Mike Lau , Jeffrey E Gershenwald , Anthony Lucci , Emily Z Keung , Merrick I Ross , Laura Pala , Eleonora Pagan , Rossana Lazcano Segura , Qian Liu , Mikayla S Borthwick , Eric Lau , Melinda S Yates , Shannon N Westin , Khalida Wani , Michael T Tetzlaff , Lauren E Haydu , Mikhila Mahendra , XiaoYan Ma , Christopher Logothetis , Zachary Kulstad , Sarah Johnson , Courtney W Hudgens , Ningping Feng , Lorenzo Federico , Georgina V Long , P Andrew Futreal , Swathi Arur , Hussein A Tawbi , Amy E Moran , Linghua Wang , Timothy P Heffernan , Joseph R Marszalek , Jennifer A Wargo

Lenalidomide promotes the development of TP53-mutated therapy-related myeloid neoplasms.

Blood
Avec: Adam S Sperling , Veronica A Guerra , James A Kennedy , Yuanqing Yan , Joanne I Hsu , Feng Wang , Andrew T Nguyen , Peter G Miller , Marie E McConkey , Vanessa A Quevedo Barrios , Ken Furudate , Linda Zhang , Rashmi Kanagal-Shamanna , Jianhua Zhang , Latasha Little , Curtis Gumbs , Naval Daver , Courtney D DiNardo , Tapan Kadia , Farhad Ravandi , Hagop Kantarjian , Guillermo Garcia-Manero , P Andrew Futreal , Benjamin L Ebert , Koichi Takahashi

Classification of High-Grade Serous Ovarian Cancer Using Tumor Morphologic Characteristics.

JAMA network open
Avec: Katelyn F Handley , Travis T Sims , Nicholas W Bateman , Deanna Glassman , Katherine I Foster , Sanghoon Lee , Jun Yao , Hui Yao , Bryan M Fellman , Jinsong Liu , Zhen Lu , Kelly A Conrads , Brian L Hood , Waleed Barakat , Li Zhao , Jianhua Zhang , Shannon N Westin , Joseph Celestino , Kelly M Rangel , Sunil Badal , Igor Pereira , Prahlad T Ram , George L Maxwell , Livia S Eberlin , P Andrew Futreal , Robert C Bast , Nicole D Fleming , Thomas P Conrads , Anil K Sood

Analysis of genomic and immune intratumor heterogeneity in linitis plastica via multiregional exome and T-cell receptor sequencing.

Molecular oncology
Avec: Jin Huang , Guofeng Zhao , Qiu Peng , Xin Yi , Liyan Ji , Jing Li , Pansong Li , Yanfang Guan , Jie Ge , Ling Chen , Runzhe Chen , Xin Hu , Won-Chul Lee , Alexandre Reuben , P Andrew Futreal , Xuefeng Xia , Jian Ma , Jianjun Zhang , Zihua Chen

Comparative Tumor Microenvironment Analysis of Primary and Recurrent Ovarian Granulosa Cell Tumors.

Molecular cancer research : MCR
Avec: Eleonora Khlebus , Veena K Vuttaradhi , Thomas Welte , Namrata Khurana , Joseph Celestino , Hannah C Beird , Curtis Gumbs , Latasha Little , Alejandra Flores Legarreta , Bryan M Fellman , Tri Nguyen , Barrett Lawson , Sammy Ferri-Borgogno , Samuel C Mok , Russell R Broaddus , David M Gershenson , P Andrew Futreal , R Tyler Hillman

Comprehensive T cell repertoire characterization of non-small cell lung cancer.

Nature communications
Avec: Alexandre Reuben , Jiexin Zhang , Shin-Heng Chiou , Rachel M Gittelman , Jun Li , Won-Chul Lee , Junya Fujimoto , Carmen Behrens , Xiaoke Liu , Feng Wang , Kelly Quek , Chunlin Wang , Farrah Kheradmand , Runzhe Chen , Chi-Wan Chow , Heather Lin , Chantale Bernatchez , Ali Jalali , Xin Hu , Chang-Jiun Wu , Agda Karina Eterovic , Edwin Roger Parra , Erik Yusko , Ryan Emerson , Sharon Benzeno , Marissa Vignali , Xifeng Wu , Yuanqing Ye , Latasha D Little , Curtis Gumbs , Xizeng Mao , Xingzhi Song , Samantha Tippen , Rebecca L Thornton , Tina Cascone , Alexandra Snyder , Jennifer A Wargo , Roy Herbst , Stephen Swisher , Humam Kadara , Cesar Moran , Neda Kalhor , Jianhua Zhang , Paul Scheet , Ara A Vaporciyan , Boris Sepesi , Don L Gibbons , Harlan Robins , Patrick Hwu , John V Heymach , Padmanee Sharma , James P Allison , Veera Baladandayuthapani , Jack J Lee , Mark M Davis , Ignacio I Wistuba , P Andrew Futreal , Jianjun Zhang

Multi-region exome sequencing reveals genomic evolution from preneoplasia to lung adenocarcinoma.

Nature communications
Avec: Xin Hu , Junya Fujimoto , Lisha Ying , Junya Fukuoka , Kazuto Ashizawa , Wenyong Sun , Alexandre Reuben , Chi-Wan Chow , Nicholas McGranahan , Runzhe Chen , Jinlin Hu , Myrna C Godoy , Kazuhiro Tabata , Kishio Kuroda , Lei Shi , Jun Li , Carmen Behrens , Edwin Roger Parra , Latasha D Little , Curtis Gumbs , Xizeng Mao , Xingzhi Song , Samantha Tippen , Rebecca L Thornton , Humam Kadara , Paul Scheet , Emily Roarty , Edwin Justin Ostrin , Xu Wang , Brett W Carter , Mara B Antonoff , Jianhua Zhang , Ara A Vaporciyan , Harvey Pass , Stephen G Swisher , John V Heymach , J Jack Lee , Ignacio I Wistuba , Waun Ki Hong , P Andrew Futreal , Dan Su , Jianjun Zhang

Statistical tests for intra-tumour clonal co-occurrence and exclusivity.

PLoS computational biology
Avec: Jack Kuipers , Ariane L Moore , Katharina Jahn , Peter Schraml , Feng Wang , Kiyomi Morita , P Andrew Futreal , Koichi Takahashi , Christian Beisel , Holger Moch , Niko Beerenwinkel

Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.

Nature communications
Avec: Kiyomi Morita , Feng Wang , Katharina Jahn , Tianyuan Hu , Tomoyuki Tanaka , Yuya Sasaki , Jack Kuipers , Sanam Loghavi , Sa A Wang , Yuanqing Yan , Ken Furudate , Jairo Matthews , Latasha Little , Curtis Gumbs , Jianhua Zhang , Xingzhi Song , Erika Thompson , Keyur P Patel , Carlos E Bueso-Ramos , Courtney D DiNardo , Farhad Ravandi , Elias Jabbour , Michael Andreeff , Jorge Cortes , Kapil Bhalla , Guillermo Garcia-Manero , Hagop Kantarjian , Marina Konopleva , Daisuke Nakada , Nicholas Navin , Niko Beerenwinkel , P Andrew Futreal , Koichi Takahashi

Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade.

Nature medicine
Avec: Miles C Andrews , Connie P M Duong , Vancheswaran Gopalakrishnan , Valerio Iebba , Wei-Shen Chen , Lisa Derosa , Md Abdul Wadud Khan , Alexandria P Cogdill , Michael G White , Matthew C Wong , Gladys Ferrere , Aurélie Fluckiger , Maria P Roberti , Paule Opolon , Maryam Tidjani Alou , Satoru Yonekura , Whijae Roh , Christine N Spencer , Irina Fernandez Curbelo , Luis Vence , Alexandre Reuben , Sarah Johnson , Reetakshi Arora , Golnaz Morad , Matthew Lastrapes , Erez N Baruch , Latasha Little , Curtis Gumbs , Zachary A Cooper , Peter A Prieto , Khalida Wani , Alexander J Lazar , Michael T Tetzlaff , Courtney W Hudgens , Margaret K Callahan , Matthew Adamow , Michael A Postow , Charlotte E Ariyan , Pierre-Olivier Gaudreau , Luigi Nezi , Didier Raoult , Catalin Mihalcioiu , Arielle Elkrief , Rossanna C Pezo , Lauren E Haydu , Julie M Simon , Hussein A Tawbi , Jennifer McQuade , Patrick Hwu , Wen-Jen Hwu , Rodabe N Amaria , Elizabeth M Burton , Scott E Woodman , Stephanie Watowich , Adi Diab , Sapna P Patel , Isabella C Glitza , Michael K Wong , Li Zhao , Jianhua Zhang , Nadim J Ajami , Joseph Petrosino , Robert R Jenq , Michael A Davies , Jeffrey E Gershenwald , P Andrew Futreal , Padmanee Sharma , James P Allison , Bertrand Routy , Laurence Zitvogel , Jennifer A Wargo

Multi-site desmoplastic small round cell tumors are genetically related and immune-cold.

NPJ precision oncology
Avec: Chia-Chin Wu , Hannah C Beird , Salah-Eddine Lamhamedi-Cherradi , Melinda Soeung , Davis Ingram , Danh D Truong , Robert W Porter , Sandhya Krishnan , Latasha Little , Curtis Gumbs , Jianhua Zhang , Mark Titus , Giannicola Genovese , Joseph A Ludwig , Alexander J Lazar , Andrea Hayes-Jordan , P Andrew Futreal

Genetic correlates in patients with Philadelphia chromosome-positive acute lymphoblastic leukemia treated with Hyper-CVAD plus dasatinib or ponatinib.

Leukemia
Avec: Yuya Sasaki , Hagop M Kantarjian , Nicholas J Short , Feng Wang , Ken Furudate , Hidetaka Uryu , Rebecca Garris , Nitin Jain , Koji Sasaki , Farhad Ravandi , Marina Konopleva , Guillermo Garcia-Manero , Latasha Little , Curtis Gumbs , Li Zhao , P Andrew Futreal , Koichi Takahashi , Elias Jabbour

Molecular Profiles of Serum-Derived Extracellular Vesicles in High-Grade Serous Ovarian Cancer.

Cancers
Avec: Li Zhao , Sara Corvigno , Shaolin Ma , Joseph Celestino , Nicole D Fleming , Richard A Hajek , Adrian Lankenau Ahumada , Nicholas B Jennings , Erika J Thompson , Hongli Tang , Shannon N Westin , Amir A Jazaeri , Jianhua Zhang , P Andrew Futreal , Anil K Sood , Sanghoon Lee

Multi-modal molecular programs regulate melanoma cell state.

Nature communications
Avec: Miles C Andrews , Junna Oba , Chang-Jiun Wu , Haifeng Zhu , Tatiana Karpinets , Caitlin A Creasy , Marie-Andrée Forget , Xiaoxing Yu , Xingzhi Song , Xizeng Mao , A Gordon Robertson , Gabriele Romano , Peng Li , Elizabeth M Burton , Yiling Lu , Robert Szczepaniak Sloane , Khalida M Wani , Kunal Rai , Alexander J Lazar , Lauren E Haydu , Matias A Bustos , Jianjun Shen , Yueping Chen , Margaret B Morgan , Jennifer A Wargo , Lawrence N Kwong , Cara L Haymaker , Elizabeth A Grimm , Patrick Hwu , Dave S B Hoon , Jianhua Zhang , Jeffrey E Gershenwald , Michael A Davies , P Andrew Futreal , Chantale Bernatchez , Scott E Woodman

Analysis of Immune Intratumor Heterogeneity Highlights Immunoregulatory and Coinhibitory Lymphocytes as Hallmarks of Recurrence in Stage I Non-Small Cell Lung Cancer.

Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc
Avec: Alejandro Francisco-Cruz , Pedro Rocha , Alexandre Reuben , Santhoshi N Krishnan , Priyam Das , Runzhe Chen , Kelly Quek , Jun Li , Edwin R Parra , Luisa M Solis , Souptik Barua , Mei Jiang , Rossana Lazcano , Chi-Wan Chow , Carmen Behrens , Curtis Gumb , Latasha Little , Junya Fukuoka , Neda Kalhor , Annikka Weissferdt , Humam Kadara , John V Heymach , Stephen Swisher , Boris Sepesi , Arvind Rao , Cesar Moran , Jianhua Zhang , J Jack Lee , Junya Fujimoto , P Andrew Futreal , Ignacio I Wistuba , Christine B Peterson , Jianjun Zhang

Complete loss of

HGG advances
Avec: Hannah C Beird , Chia-Chin Wu , Michael Nakazawa , Davis Ingram , Joseph R Daniele , Rossana Lazcano , Latasha Little , Christopher Davies , Najat C Daw , Khalida Wani , Wei-Lien Wang , Xingzhi Song , Curtis Gumbs , Jianhua Zhang , Brian Rubin , Anthony Conley , Adrienne M Flanagan , Alexander J Lazar , P Andrew Futreal

Efficacy and predictors of response of lenalidomide and rituximab in patients with treatment-naive and relapsed CLL.

Blood advances
Avec: Paolo Strati , Koichi Takahashi , Christine B Peterson , Michael J Keating , Philip A Thompson , Naval G Daver , Nitin Jain , Jan A Burger , Zeev Estrov , Susan M O'Brien , Hagop M Kantarjian , William G Wierda , P Andrew Futreal , Alessandra Ferrajoli

Author Correction: Circulating tumor DNA analysis depicts subclonal architecture and genomic evolution of small cell lung cancer.

Nature communications
Avec: Jingying Nong , Yuhua Gong , Yanfang Guan , Xin Yi , Yuting Yi , Lianpeng Chang , Ling Yang , Jialin Lv , Zhirong Guo , Hongyan Jia , Yuxing Chu , Tao Liu , Ming Chen , Lauren Byers , Emily Roarty , Vincent K Lam , Vassiliki A Papadimitrakopoulou , Ignacio Wistuba , John V Heymach , Bonnie Glisson , Zhongxing Liao , J Jack Lee , P Andrew Futreal , Shucai Zhang , Xuefeng Xia , Jianjun Zhang , Jinghui Wang

Author Correction: Landscape of somatic mutations in 560 breast cancer whole-genome sequences.

Nature
Avec: Serena Nik-Zainal , Helen Davies , Johan Staaf , Manasa Ramakrishna , Dominik Glodzik , Xueqing Zou , Inigo Martincorena , Ludmil B Alexandrov , Sancha Martin , David C Wedge , Peter Van Loo , Young Seok Ju , Marcel Smid , Arie B Brinkman , Sandro Morganella , Miriam R Aure , Ole Christian Lingjærde , Anita Langerød , Markus Ringnér , Sung-Min Ahn , Sandrine Boyault , Jane E Brock , Annegien Broeks , Adam Butler , Christine Desmedt , Luc Dirix , Serge Dronov , Aquila Fatima , John A Foekens , Moritz Gerstung , Gerrit K J Hooijer , Se Jin Jang , David R Jones , Hyung-Yong Kim , Tari A King , Savitri Krishnamurthy , Hee Jin Lee , Jeong-Yeon Lee , Yilong Li , Stuart McLaren , Andrew Menzies , Ville Mustonen , Sarah O'Meara , Iris Pauporté , Xavier Pivot , Colin A Purdie , Keiran Raine , Kamna Ramakrishnan , F Germán Rodríguez-González , Gilles Romieu , Anieta M Sieuwerts , Peter T Simpson , Rebecca Shepherd , Lucy Stebbings , Olafur A Stefansson , Jon Teague , Stefania Tommasi , Isabelle Treilleux , Gert G Van den Eynden , Peter Vermeulen , Anne Vincent-Salomon , Lucy Yates , Carlos Caldas , Laura Van't Veer , Andrew Tutt , Stian Knappskog , Benita Kiat Tee Tan , Jos Jonkers , Åke Borg , Naoto T Ueno , Christos Sotiriou , Alain Viari , P Andrew Futreal , Peter J Campbell , Paul N Span , Steven Van Laere , Sunil R Lakhani , Jorunn E Eyfjord , Alastair M Thompson , Ewan Birney , Hendrik G Stunnenberg , Marc J van de Vijver , John W M Martens , Anne-Lise Børresen-Dale , Andrea L Richardson , Gu Kong , Gilles Thomas , Michael R Stratton

Evolution of Genomic and T-cell Repertoire Heterogeneity of Malignant Pleural Mesothelioma Under Dasatinib Treatment.

Clinical cancer research : an official journal of the American Association for Cancer Research
Avec: Runzhe Chen , Won-Chul Lee , Junya Fujimoto , Jun Li , Xin Hu , Reza Mehran , David Rice , Stephen G Swisher , Boris Sepesi , Hai T Tran , Chi-Wan Chow , Latasha D Little , Curtis Gumbs , Cara Haymaker , John V Heymach , Ignacio I Wistuba , J Jack Lee , P Andrew Futreal , Jianhua Zhang , Alexandre Reuben , Anne S Tsao , Jianjun Zhang

Comparative genomics of high grade neuroendocrine carcinoma of the cervix.

PloS one
Avec: R Tyler Hillman , Robert Cardnell , Junya Fujimoto , Won-Chul Lee , Jianjun Zhang , Lauren A Byers , Preetha Ramalingam , Mario Leitao , Elizabeth Swisher , P Andrew Futreal , Michael Frumovitz

Immuno-genomic landscape of osteosarcoma.

Nature communications
Avec: Chia-Chin Wu , Hannah C Beird , J Andrew Livingston , Shailesh Advani , Akash Mitra , Shaolong Cao , Alexandre Reuben , Davis Ingram , Wei-Lien Wang , Zhenlin Ju , Cheuk Hong Leung , Heather Lin , Youyun Zheng , Jason Roszik , Wenyi Wang , Shreyaskumar Patel , Robert S Benjamin , Neeta Somaiah , Anthony P Conley , Gordon B Mills , Patrick Hwu , Richard Gorlick , Alexander Lazar , Najat C Daw , Valerae Lewis , P Andrew Futreal

Gut microbiome features associated with liver fibrosis in Hispanics, a population at high risk for fatty liver disease.

Hepatology (Baltimore, Md.)
Avec: Suet-Ying Kwan , Jingjing Jiao , Aron Joon , Peng Wei , Lauren E Petty , Jennifer E Below , Carrie R Daniel , Xiaogang Wu , Jianhua Zhang , Robert R Jenq , P Andrew Futreal , Ernest T Hawk , Joseph B McCormick , Susan P Fisher-Hoch , Laura Beretta

The histologic phenotype of lung cancers is associated with transcriptomic features rather than genomic characteristics.

Nature communications
Avec: Ming Tang , Hussein A Abbas , Marcelo V Negrao , Maheshwari Ramineni , Xin Hu , Shawna Marie Hubert , Junya Fujimoto , Alexandre Reuben , Susan Varghese , Jianhua Zhang , Jun Li , Chi-Wan Chow , Xizeng Mao , Xingzhi Song , Won-Chul Lee , Jia Wu , Latasha Little , Curtis Gumbs , Carmen Behrens , Cesar Moran , Annikka Weissferdt , J Jack Lee , Boris Sepesi , Stephen Swisher , Chao Cheng , Jonathan Kurie , Don Gibbons , John V Heymach , Ignacio I Wistuba , P Andrew Futreal , Neda Kalhor , Jianjun Zhang

Prediction of biomarkers and therapeutic combinations for anti-PD-1 immunotherapy using the global gene network association.

Nature communications
Avec: Chia-Chin Wu , Y Alan Wang , J Andrew Livingston , Jianhua Zhang , P Andrew Futreal

Clinical activity of checkpoint inhibitors in angiosarcoma: A retrospective cohort study.

Cancer
Avec: Vinod Ravi , Aparna Subramaniam , Jing Zheng , Behrang Amini , Van A Trinh , Jocelyn Joseph , Robert G Mennel , Andrew J Bishop , Erich M Sturgis , Ryan P Goepfert , Sudha Yalamanchili , Gilberto Botello , Bettzy Stephen , Sarina A Piha-Paul , Anisha B Patel , Alexander J Lazar , Anthony P Conley , Robert S Benjamin , Shreyaskumar R Patel , Phillip A Futreal , Neeta Somaiah , Aung Naing

Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression.

Nature biotechnology
Avec: Shaolong Cao , Jennifer R Wang , Shuangxi Ji , Peng Yang , Yaoyi Dai , Shuai Guo , Matthew D Montierth , John Paul Shen , Xiao Zhao , Jingxiao Chen , Jaewon James Lee , Paola A Guerrero , Nicholas Spetsieris , Nikolai Engedal , Sinja Taavitsainen , Kaixian Yu , Julie Livingstone , Vinayak Bhandari , Shawna M Hubert , Najat C Daw , P Andrew Futreal , Eleni Efstathiou , Bora Lim , Andrea Viale , Jianjun Zhang , Matti Nykter , Bogdan A Czerniak , Powel H Brown , Charles Swanton , Pavlos Msaouel , Anirban Maitra , Scott Kopetz , Peter Campbell , Terence P Speed , Paul C Boutros , Hongtu Zhu , Alfonso Urbanucci , Jonas Demeulemeester , Peter Van Loo , Wenyi Wang

A novel Bayesian model for assessing intratumor heterogeneity of tumor infiltrating leukocytes with multi-region gene expression sequencing.

bioRxiv : the preprint server for biology
Avec: Peng Yang , Shawna M Hubert , P Andrew Futreal , Xingzhi Song , Jianhua Zhang , J Jack Lee , Ignacio Wistuba , Ying Yuan , Jianjun Zhang , Ziyi Li

Whole genome and reverse protein phase array landscapes of patient derived osteosarcoma xenograft models.

Scientific reports
Avec: Chia-Chin Wu , Licai Huang , Zhongting Zhang , Zhenlin Ju , Xingzhi Song , E Anders Kolb , Wendong Zhang , Jonathan Gill , Min Ha , Malcolm A Smith , Peter Houghton , Christopher L Morton , Raushan Kurmasheva , John Maris , Yael Mosse , Yiling Lu , Richard Gorlick , P Andrew Futreal , Hannah C Beird

Targeting IL-11R/EZH2 signaling axis as a therapeutic strategy for osteosarcoma lung metastases.

Discover oncology
Avec: Eswaran Devarajan , R Eric Davis , Hannah C Beird , Wei-Lien Wang , V Behrana Jensen , Arumugam Jayakumar , Cheuk Hong Leung , Heather Y Lin , Chia-Chin Wu , Stephanie A Ihezie , Jen-Wei Tsai , P Andrew Futreal , Valerae O Lewis

Multifactorial Deep Learning Reveals Pan-Cancer Genomic Tumor Clusters with Distinct Immunogenomic Landscape and Response to Immunotherapy.

Clinical cancer research : an official journal of the American Association for Cancer Research
Avec: Feng Xie , Jianjun Zhang , Jiayin Wang , Alexandre Reuben , Wei Xu , Xin Yi , Frederick S Varn , Yongsheng Ye , Junwen Cheng , Miao Yu , Yue Wang , Yufeng Liu , Mingchao Xie , Peng Du , Ke Ma , Xin Ma , Penghui Zhou , Shengli Yang , Yaobing Chen , Guoping Wang , Xuefeng Xia , Zhongxing Liao , John V Heymach , Ignacio I Wistuba , P Andrew Futreal , Kai Ye , Chao Cheng , Tian Xia

The Prognostic and Therapeutic Role of Genomic Subtyping by Sequencing Tumor or Cell-Free DNA in Pulmonary Large-Cell Neuroendocrine Carcinoma.

Clinical cancer research : an official journal of the American Association for Cancer Research
Avec: Minglei Zhuo , Yanfang Guan , Xue Yang , Lingzhi Hong , Yuqi Wang , Zhongwu Li , Runzhe Chen , Hussein A Abbas , Lianpeng Chang , Yuhua Gong , Nan Wu , Jia Zhong , Wenting Chen , Hanxiao Chen , Zhi Dong , Xiang Zhu , Jianjie Li , Yuyan Wang , Tongtong An , Meina Wu , Ziping Wang , Jiayin Wang , Emily B Roarty , Waree Rinsurongkawong , Jeff Lewis , Jack A Roth , Stephen G Swisher , J Jack Lee , John V Heymach , Ignacio I Wistuba , Neda Kalhor , Ling Yang , Xin Yi , P Andrew Futreal , Bonnie S Glisson , Xuefeng Xia , Jianjun Zhang , Jun Zhao

Genetic hallmarks of recurrent/metastatic adenoid cystic carcinoma.

The Journal of clinical investigation
Avec: Allen S Ho , Angelica Ochoa , Gowtham Jayakumaran , Ahmet Zehir , Cristina Valero Mayor , Justin Tepe , Vladimir Makarov , Martin G Dalin , Jie He , Mark Bailey , Meagan Montesion , Jeffrey S Ross , Vincent A Miller , Lindsay Chan , Ian Ganly , Snjezana Dogan , Nora Katabi , Petros Tsipouras , Patrick Ha , Nishant Agrawal , David B Solit , P Andrew Futreal , Adel K El Naggar , Jorge S Reis-Filho , Britta Weigelt , Alan L Ho , Nikolaus Schultz , Timothy A Chan , Luc Gt Morris

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Jianhua Zhang 24 collaborations
Jianjun Zhang 18 collaborations
Curtis Gumbs 15 collaborations
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Latasha Little 13 collaborations
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