Oliver Rübel

Affiliations

Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Publications (7)

HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards.

Proceedings : ... IEEE International Conference on Big Data. IEEE International Conference on Big Data

Avec: Andrew J Tritt , Oliver Rübel , Benjamin Dichter , Ryan Ly , Donghe Kang , Edward F Chang , Loren M Frank , Kristofer Bouchard

MAGI: A Method for Metabolite Annotation and Gene Integration.

ACS chemical biology

Avec: Onur Erbilgin , Oliver Rübel , Katherine B Louie , Matthew Trinh , Markus de Raad , Tony Wildish , Daniel Udwary , Cindi Hoover , Samuel Deutsch , Trent R Northen , Benjamin P Bowen

Structured behavioral data format: An NWB extension standard for task-based behavioral neuroscience experiments.

bioRxiv : the preprint server for biology

Avec: Ryan Ly , Matthew Avaylon , Michael Wulf , Adam Kepecs , Oliver Rübel

Rotational dynamics and transition mechanisms of surface-adsorbed proteins.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Shuai Zhang , Robbie Sadre , Benjamin A Legg , Harley Pyles , Talita Perciano , E Wes Bethel , David Baker , Oliver Rübel , James J De Yoreo

Spyglass: a data analysis framework for reproducible and shareable neuroscience research.

bioRxiv : the preprint server for biology

Avec: Kyu Hyun Lee , Eric Denovellis , Ryan Ly , Jeremy Magland , Jeff Soules , Alison E Comrie , Daniel P Gramling , Jennifer A Guidera , Rhino Nevers , Philip Adenekan , Chris Brozdowski , Sam Bray , Emily Monroe , Ji Hyun Bak , Michael Coulter , Xulu Sun , Andrew Tritt , Oliver Rübel , Thinh Nguyen , Dimitri Yatsenko , Joshua Chu , Caleb Kemere , Samuel Garcia , Alessio Buccino , Loren M Frank

Predicting and Comparing the Performance of Array Management Libraries.

Proceedings. IPDPS (Conference)

Avec: Donghe Kang , Oliver Rübel , Suren Byna , Spyros Blanas

The Neurodata Without Borders ecosystem for neurophysiological data science.

eLife

Avec: Oliver Rübel , Andrew Tritt , Ryan Ly , Benjamin K Dichter , Satrajit Ghosh , Lawrence Niu , Pamela Baker , Ivan Soltesz , Lydia Ng , Karel Svoboda , Loren Frank , Kristofer E Bouchard

Réseau de co-auteurs

Ryan Ly 4 collaborations

Donghe Kang 2 collaborations

Loren M Frank 2 collaborations

Andrew Tritt 2 collaborations

Andrew J Tritt 1 collaboration

Benjamin Dichter 1 collaboration

Edward F Chang 1 collaboration

Kristofer Bouchard 1 collaboration

Onur Erbilgin 1 collaboration

Katherine B Louie 1 collaboration

Matthew Trinh 1 collaboration

Markus de Raad 1 collaboration

Tony Wildish 1 collaboration

Daniel Udwary 1 collaboration

Cindi Hoover 1 collaboration

Samuel Deutsch 1 collaboration

Trent R Northen 1 collaboration

Benjamin P Bowen 1 collaboration

Matthew Avaylon 1 collaboration

Michael Wulf 1 collaboration

Adam Kepecs 1 collaboration

Shuai Zhang 1 collaboration

Robbie Sadre 1 collaboration

Benjamin A Legg 1 collaboration

Harley Pyles 1 collaboration

Talita Perciano 1 collaboration

E Wes Bethel 1 collaboration

David Baker 1 collaboration

James J De Yoreo 1 collaboration

Kyu Hyun Lee 1 collaboration

Eric Denovellis 1 collaboration

Jeremy Magland 1 collaboration

Jeff Soules 1 collaboration

Alison E Comrie 1 collaboration

Daniel P Gramling 1 collaboration

Jennifer A Guidera 1 collaboration

Rhino Nevers 1 collaboration

Philip Adenekan 1 collaboration

Chris Brozdowski 1 collaboration

Sam Bray 1 collaboration

Emily Monroe 1 collaboration

Ji Hyun Bak 1 collaboration

Michael Coulter 1 collaboration

Xulu Sun 1 collaboration

Thinh Nguyen 1 collaboration

Dimitri Yatsenko 1 collaboration

Joshua Chu 1 collaboration

Caleb Kemere 1 collaboration

Samuel Garcia 1 collaboration

Alessio Buccino 1 collaboration

Suren Byna 1 collaboration

Spyros Blanas 1 collaboration

Benjamin K Dichter 1 collaboration

Satrajit Ghosh 1 collaboration

Lawrence Niu 1 collaboration

Pamela Baker 1 collaboration

Ivan Soltesz 1 collaboration

Lydia Ng 1 collaboration

Karel Svoboda 1 collaboration

Loren Frank 1 collaboration

Kristofer E Bouchard 1 collaboration