Nitin S Baliga

Affiliations

Institute for Systems Biology, Seattle, WA 98109, USA; Molecular and Cellular Biology Program, Departments of Microbiology and Biology, University of Washington, Seattle, WA; Lawrence Berkeley National Laboratories, Berkeley, CA. Electronic address: nitin.baliga@isbscience.org.

Publications (16)

Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis.

Cell reports

Avec: Eliza J R Peterson , Abrar A Abidi , Mario L Arrieta-Ortiz , Boris Aguilar , James T Yurkovich , Amardeep Kaur , Min Pan , Vivek Srinivas , Ilya Shmulevich , Nitin S Baliga

Inference of Bacterial Small RNA Regulatory Networks and Integration with Transcription Factor-Driven Regulatory Networks.

mSystems

Avec: Mario L Arrieta-Ortiz , Christoph Hafemeister , Bentley Shuster , Nitin S Baliga , Richard Bonneau , Patrick Eichenberger

Path-seq identifies an essential mycolate remodeling program for mycobacterial host adaptation.

Molecular systems biology

Avec: Eliza Jr Peterson , Rebeca Bailo , Alissa C Rothchild , Mario L Arrieta-Ortiz , Amardeep Kaur , Min Pan , Dat Mai , Abrar A Abidi , Charlotte Cooper , Alan Aderem , Apoorva Bhatt , Nitin S Baliga

Gene regulatory network topology governs resistance and treatment escape in glioma stem-like cells.

Science advances

Avec: James H Park , Parvinder Hothi , Adrian Lopez Garcia de Lomana , Min Pan , Rachel Calder , Serdar Turkarslan , Wei-Ju Wu , Hwahyung Lee , Anoop P Patel , Charles Cobbs , Sui Huang , Nitin S Baliga

Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions.

The ISME journal

Avec: Serdar Turkarslan , Nejc Stopnisek , Anne W Thompson , Christina E Arens , Jacob J Valenzuela , James Wilson , Kristopher A Hunt , Jessica Hardwicke , Adrián López García de Lomana , Sujung Lim , Yee Mey Seah , Ying Fu , Liyou Wu , Jizhong Zhou , Kristina L Hillesland , David A Stahl , Nitin S Baliga

A Systems Approach to Brain Tumor Treatment.

Cancers

Avec: James H Park , Adrian Lopez Garcia de Lomana , Diego M Marzese , Tiffany Juarez , Abdullah Feroze , Parvinder Hothi , Charles Cobbs , Anoop P Patel , Santosh Kesari , Sui Huang , Nitin S Baliga

Genetic program activity delineates risk, relapse, and therapy responsiveness in multiple myeloma.

NPJ precision oncology

Avec: Matthew A Wall , Serdar Turkarslan , Wei-Ju Wu , Samuel A Danziger , David J Reiss , Mike J Mason , Andrew P Dervan , Matthew W B Trotter , Douglas Bassett , Robert M Hershberg , Adrián López García de Lomana , Alexander V Ratushny , Nitin S Baliga

Contrasting heat stress response patterns of coral holobionts across the Red Sea suggest distinct mechanisms of thermal tolerance.

Molecular ecology

Avec: Christian R Voolstra , Jacob J Valenzuela , Serdar Turkarslan , Anny Cárdenas , Benjamin C C Hume , Gabriela Perna , Carol Buitrago-López , Katherine Rowe , Monica V Orellana , Nitin S Baliga , Suman Paranjape , Guilhem Banc-Prandi , Jessica Bellworthy , Maoz Fine , Sarah Frias-Torres , Daniel J Barshis

Reconsidering the in vivo functions of Clostridial Stickland amino acid fermentations.

Anaerobe

Avec: Aidan Pavao , Madeline Graham , Mario L Arrieta-Ortiz , Selva Rupa Christinal Immanuel , Nitin S Baliga , Lynn Bry

Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli.

mSystems

Avec: Mario L Arrieta-Ortiz , Min Pan , Amardeep Kaur , Evan Pepper-Tunick , Vivek Srinivas , Ananya Dash , Selva Rupa Christinal Immanuel , Aaron N Brooks , Tyson R Shepherd , Nitin S Baliga

MtrA modulates Mycobacterium tuberculosis cell division in host microenvironments to mediate intrinsic resistance and drug tolerance.

Cell reports

Avec: Eliza J R Peterson , Aaron N Brooks , David J Reiss , Amardeep Kaur , Julie Do , Min Pan , Wei-Ju Wu , Robert Morrison , Vivek Srinivas , Warren Carter , Mario L Arrieta-Ortiz , Rene A Ruiz , Apoorva Bhatt , Nitin S Baliga

Contribution of Microorganisms with the Clade II Nitrous Oxide Reductase to Suppression of Surface Emissions of Nitrous Oxide.

Environmental science & technology

Avec: Kristopher A Hunt , Alex V Carr , Anne E Otwell , Jacob J Valenzuela , Kathleen S Walker , Emma R Dixon , Lauren M Lui , Torben N Nielsen , Samuel Bowman , Frederick von Netzer , Ji-Won Moon , Christopher W Schadt , Miguel Rodriguez , Kenneth Lowe , Dominique Joyner , Katherine J Davis , Xiaoqin Wu , Romy Chakraborty , Matthew W Fields , Jizhong Zhou , Terry C Hazen , Adam P Arkin , Scott D Wankel , Nitin S Baliga , David A Stahl

Individualized dynamic risk assessment for multiple myeloma.

medRxiv : the preprint server for health sciences

Avec: Carl Murie , Serdar Turkarslan , Anoop Patel , David G Coffey , Pamela S Becker , Nitin S Baliga

Gene regulatory network topology governs resistance and treatment escape in glioma stem-like cells.

bioRxiv : the preprint server for biology

Avec: James H Park , Parvinder Hothi , Adrian Lopez Garcia de Lomana , Min Pan , Rachel Calder , Serdar Turkarslan , Wei-Ju Wu , Hwahyung Lee , Anoop P Patel , Charles Cobbs , Sui Huang , Nitin S Baliga

Consequential insights for advancing informal STEM learning and outcomes for students from historically marginalized communities.

Humanities & social sciences communications

Avec: Claudia McLaughlin Ludwig , Rebecca A Howsmon , Shelley Stromholt , Jacob J Valenzuela , Rachel Calder , Nitin S Baliga

Comparison of the transcriptome, lipidome, and c-di-GMP production between BCGΔBCG1419c and BCG, with Mincle- and Myd88-dependent induction of proinflammatory cytokines in murine macrophages.

Scientific reports

Avec: Mario Alberto Flores-Valdez , Eliza J R Peterson , Michel de Jesús Aceves-Sánchez , Nitin S Baliga , Yasu S Morita , Ian L Sparks , Deepak Kumar Saini , Rahul Yadav , Roland Lang , Dulce Mata-Espinosa , Juan Carlos León-Contreras , Rogelio Hernández-Pando

Réseau de co-auteurs

Mario L Arrieta-Ortiz 6 collaborations

Min Pan 6 collaborations

Serdar Turkarslan 6 collaborations

Amardeep Kaur 4 collaborations

Wei-Ju Wu 4 collaborations

Jacob J Valenzuela 4 collaborations

Eliza J R Peterson 3 collaborations

Vivek Srinivas 3 collaborations

James H Park 3 collaborations

Parvinder Hothi 3 collaborations

Adrian Lopez Garcia de Lomana 3 collaborations

Rachel Calder 3 collaborations

Anoop P Patel 3 collaborations

Charles Cobbs 3 collaborations

Sui Huang 3 collaborations

Abrar A Abidi 2 collaborations

Apoorva Bhatt 2 collaborations

Hwahyung Lee 2 collaborations

Kristopher A Hunt 2 collaborations

Adrián López García de Lomana 2 collaborations

Jizhong Zhou 2 collaborations

David A Stahl 2 collaborations

David J Reiss 2 collaborations

Selva Rupa Christinal Immanuel 2 collaborations

Aaron N Brooks 2 collaborations

Boris Aguilar 1 collaboration

James T Yurkovich 1 collaboration

Ilya Shmulevich 1 collaboration

Christoph Hafemeister 1 collaboration

Bentley Shuster 1 collaboration

Richard Bonneau 1 collaboration

Patrick Eichenberger 1 collaboration

Eliza Jr Peterson 1 collaboration

Rebeca Bailo 1 collaboration

Alissa C Rothchild 1 collaboration

Dat Mai 1 collaboration

Charlotte Cooper 1 collaboration

Alan Aderem 1 collaboration

Nejc Stopnisek 1 collaboration

Anne W Thompson 1 collaboration

Christina E Arens 1 collaboration

James Wilson 1 collaboration

Jessica Hardwicke 1 collaboration

Sujung Lim 1 collaboration

Yee Mey Seah 1 collaboration

Ying Fu 1 collaboration

Liyou Wu 1 collaboration

Kristina L Hillesland 1 collaboration

Diego M Marzese 1 collaboration

Tiffany Juarez 1 collaboration

Abdullah Feroze 1 collaboration

Santosh Kesari 1 collaboration

Matthew A Wall 1 collaboration

Samuel A Danziger 1 collaboration

Mike J Mason 1 collaboration

Andrew P Dervan 1 collaboration

Matthew W B Trotter 1 collaboration

Douglas Bassett 1 collaboration

Robert M Hershberg 1 collaboration

Alexander V Ratushny 1 collaboration

Christian R Voolstra 1 collaboration

Anny Cárdenas 1 collaboration

Benjamin C C Hume 1 collaboration

Gabriela Perna 1 collaboration

Carol Buitrago-López 1 collaboration

Katherine Rowe 1 collaboration

Monica V Orellana 1 collaboration

Suman Paranjape 1 collaboration

Guilhem Banc-Prandi 1 collaboration

Jessica Bellworthy 1 collaboration

Maoz Fine 1 collaboration

Sarah Frias-Torres 1 collaboration

Daniel J Barshis 1 collaboration

Aidan Pavao 1 collaboration

Madeline Graham 1 collaboration

Lynn Bry 1 collaboration

Evan Pepper-Tunick 1 collaboration

Ananya Dash 1 collaboration

Tyson R Shepherd 1 collaboration

Julie Do 1 collaboration

Robert Morrison 1 collaboration

Warren Carter 1 collaboration

Rene A Ruiz 1 collaboration

Alex V Carr 1 collaboration

Anne E Otwell 1 collaboration

Kathleen S Walker 1 collaboration

Emma R Dixon 1 collaboration

Lauren M Lui 1 collaboration

Torben N Nielsen 1 collaboration

Samuel Bowman 1 collaboration

Frederick von Netzer 1 collaboration

Ji-Won Moon 1 collaboration

Christopher W Schadt 1 collaboration

Miguel Rodriguez 1 collaboration

Kenneth Lowe 1 collaboration

Dominique Joyner 1 collaboration

Katherine J Davis 1 collaboration

Xiaoqin Wu 1 collaboration

Romy Chakraborty 1 collaboration

Matthew W Fields 1 collaboration

Terry C Hazen 1 collaboration

Adam P Arkin 1 collaboration

Scott D Wankel 1 collaboration

Carl Murie 1 collaboration

Anoop Patel 1 collaboration

David G Coffey 1 collaboration

Pamela S Becker 1 collaboration

Claudia McLaughlin Ludwig 1 collaboration

Rebecca A Howsmon 1 collaboration

Shelley Stromholt 1 collaboration

Mario Alberto Flores-Valdez 1 collaboration

Michel de Jesús Aceves-Sánchez 1 collaboration

Yasu S Morita 1 collaboration

Ian L Sparks 1 collaboration

Deepak Kumar Saini 1 collaboration

Rahul Yadav 1 collaboration

Roland Lang 1 collaboration

Dulce Mata-Espinosa 1 collaboration

Juan Carlos León-Contreras 1 collaboration

Rogelio Hernández-Pando 1 collaboration