Mats Töpel

Affiliations

Department of Marine Sciences, University of Gothenburg, Box 462, 40530, Gothenburg, Sweden.
Gothenburg Global Biodiversity Center (GGBC), Box 461, 40530, Gothenburg, Sweden.

ORCID: http://orcid.org/0000-0001-7989-696X

Publications (25)

Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation.

Scientific reports

Avec: Oskar N Johansson , Mats Töpel , Jenny Egardt , Matthew I M Pinder , Mats X Andersson , Anna Godhe , Adrian K Clarke

Ubiquitin-dependent chloroplast-associated protein degradation in plants.

Science (New York, N.Y.)

Avec: Qihua Ling , William Broad , Raphael Trösch , Mats Töpel , Tijen Demiral Sert , Panagiotis Lymperopoulos , Amy Baldwin , R Paul Jarvis

Genome Sequence of

Microbiology resource announcements

Avec: Mats Töpel , Matthew I M Pinder , Oskar N Johansson , Olga Kourtchenko , Anna Godhe , Adrian K Clarke

Resting cells of Skeletonema marinoi assimilate organic compounds and respire by dissimilatory nitrate reduction to ammonium in dark, anoxic conditions.

Environmental microbiology

Avec: Rickard Stenow , Elizabeth K Robertson , Olga Kourtchenko , Martin J Whitehouse , Matthew I M Pinder , Giovanna Benvenuto , Mats Töpel , Anna Godhe , Helle Ploug

MSALigMap-A Tool for Mapping Active-Site Amino Acids in PDB Structures onto Known and Novel Unannotated Homologous Sequences with Similar Function.

Life (Basel, Switzerland)

Avec: Sameer Hassan , Sameena Haleemath Sameer , Mats Töpel , Henrik Aronsson

Development and characterization of an EMS-mutagenized wheat population and identification of salt-tolerant wheat lines.

BMC plant biology

Avec: Johanna Lethin , Shahriar S M Shakil , Sameer Hassan , Nick Sirijovski , Mats Töpel , Olof Olsson , Henrik Aronsson

Post-glacial establishment of locally adapted fish populations over a steep salinity gradient.

Journal of evolutionary biology

Avec: Erica H Leder , Carl André , Alan Le Moan , Mats Töpel , Anders Blomberg , Jonathan N Havenhand , Kai Lindström , Filip A M Volckaert , Charlotta Kvarnemo , Kerstin Johannesson , Ola Svensson

Genome Sequence of

Journal of genomics

Avec: Matthew I M Pinder , Oskar N Johansson , Alvar Almstedt , Olga Kourtchenko , Adrian K Clarke , Anna Godhe , Mats Töpel

Skeletonema marinoi as a new genetic model for marine chain-forming diatoms.

Scientific reports

Avec: Oskar N Johansson , Mats Töpel , Matthew I M Pinder , Olga Kourtchenko , Anders Blomberg , Anna Godhe , Adrian K Clarke

A metabarcoding analysis of the wrackbed microbiome indicates a phylogeographic break along the North Sea-Baltic Sea transition zone.

Environmental microbiology

Avec: Emma L Berdan , Fabian Roger , Maren Wellenreuther , Alexandra Kinnby , Gunnar Cervin , Ricardo Pereyra , Mats Töpel , Kerstin Johannesson , Roger K Butlin , Carl André

A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (

GigaByte (Hong Kong, China)

Avec: Nataly Allasi Canales , Oscar A Pérez-Escobar , Robyn F Powell , Mats Töpel , Catherine Kidner , Mark Nesbitt , Carla Maldonado , Christopher J Barnes , Nina Rønsted , Natalia A S Przelomska , Ilia J Leitch , Alexandre Antonelli

Clones on the run: The genomics of a recently expanded partially clonal species.

Molecular ecology

Avec: Ricardo T Pereyra , Marina Rafajlović , Pierre De Wit , Matthew Pinder , Alexandra Kinnby , Mats Töpel , Kerstin Johannesson

Whole Genome Sequence of

Journal of genomics

Avec: Mats Töpel , Matthew I M Pinder , Oskar N Johansson , Olga Kourtchenko , Anna Godhe , Adrian K Clarke

Complete Genome Sequence of Novel

Journal of genomics

Avec: Mats Töpel , Matthew I M Pinder , Oskar N Johansson , Olga Kourtchenko , Adrian K Clarke , Anna Godhe

Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline.

The ISME journal

Avec: Eveline Pinseel , Teofil Nakov , Koen Van den Berge , Kala M Downey , Kathryn J Judy , Olga Kourtchenko , Anke Kremp , Elizabeth C Ruck , Conny Sjöqvist , Mats Töpel , Anna Godhe , Andrew J Alverson

Ligand Binding Site Comparison - LiBiSCo - a web-based tool for analyzing interactions between proteins and ligands to explore amino acid specificity within active sites.

Proteins

Avec: Sameer Hassan , Mats Töpel , Henrik Aronsson

Strain-specific metabarcoding reveals rapid evolution of copper tolerance in populations of the coastal diatom Skeletonema marinoi.

Molecular ecology

Avec: Björn Andersson , Olof Berglund , Helena L Filipsson , Olga Kourtchenko , Anna Godhe , Kerstin Johannesson , Mats Töpel , Matthew I M Pinder , Lara Hoepfner , Karin Rengefors

Improving the genome and proteome annotations of the marine model diatom

Marine life science & technology

Avec: Xiao-Huang Chen , Ming-Kun Yang , Yuan-Yuan Li , Zhang-Xian Xie , Shu-Feng Zhang , Mats Töpel , Shady A Amin , Lin Lin , Feng Ge , Da-Zhi Wang

The round goby genome provides insights into mechanisms that may facilitate biological invasions.

BMC biology

Avec: Irene Adrian-Kalchhauser , Anders Blomberg , Tomas Larsson , Zuzana Musilova , Claire R Peart , Martin Pippel , Monica Hongroe Solbakken , Jaanus Suurväli , Jean-Claude Walser , Joanna Yvonne Wilson , Magnus Alm Rosenblad , Demian Burguera , Silvia Gutnik , Nico Michiels , Mats Töpel , Kirill Pankov , Siegfried Schloissnig , Sylke Winkler

Complete Genome Sequence of the Diatom-Associated Bacterium

Microbiology resource announcements

Avec: Mats Töpel , Matthew I M Pinder , Oskar N Johansson , Olga Kourtchenko , Anna Godhe , Adrian K Clarke

Exploring Molecular Signs of Sex in the Marine Diatom

Genes

Avec: Maria Immacolata Ferrante , Laura Entrambasaguas , Mathias Johansson , Mats Töpel , Anke Kremp , Marina Montresor , Anna Godhe

Friends With Benefits: Exploring the Phycosphere of the Marine Diatom

Frontiers in microbiology

Avec: Oskar N Johansson , Matthew I M Pinder , Fredrik Ohlsson , Jenny Egardt , Mats Töpel , Adrian K Clarke

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements.

Systematic biology

Avec: Tobias Andermann , Alexandre M Fernandes , Urban Olsson , Mats Töpel , Bernard Pfeil , Bengt Oxelman , Alexandre Aleixo , Brant C Faircloth , Alexandre Antonelli

Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure.

Nature communications

Avec: Jan Zrimec , Christoph S Börlin , Filip Buric , Azam Sheikh Muhammad , Rhongzen Chen , Verena Siewers , Vilhelm Verendel , Jens Nielsen , Mats Töpel , Aleksej Zelezniak

Chloroplast magnesium transporters play essential but differential roles in maintaining magnesium homeostasis.

Frontiers in plant science

Avec: Emilija Dukic , Kim A van Maldegem , Kashif Mohd Shaikh , Kento Fukuda , Mats Töpel , Katalin Solymosi , Jonna Hellsten , Thomas Hesselhøj Hansen , Søren Husted , John Higgins , Satoshi Sano , Sumio Ishijima , Cornelia Spetea

Réseau de co-auteurs

Anna Godhe 11 collaborations

Matthew I M Pinder 10 collaborations

Olga Kourtchenko 9 collaborations

Oskar N Johansson 8 collaborations

Adrian K Clarke 8 collaborations

Kerstin Johannesson 4 collaborations

Sameer Hassan 3 collaborations

Henrik Aronsson 3 collaborations

Anders Blomberg 3 collaborations

Jenny Egardt 2 collaborations

Carl André 2 collaborations

Alexandra Kinnby 2 collaborations

Alexandre Antonelli 2 collaborations

Anke Kremp 2 collaborations

Mats X Andersson 1 collaboration

Qihua Ling 1 collaboration

William Broad 1 collaboration

Raphael Trösch 1 collaboration

Tijen Demiral Sert 1 collaboration

Panagiotis Lymperopoulos 1 collaboration

Amy Baldwin 1 collaboration

R Paul Jarvis 1 collaboration

Rickard Stenow 1 collaboration

Elizabeth K Robertson 1 collaboration

Martin J Whitehouse 1 collaboration

Giovanna Benvenuto 1 collaboration

Helle Ploug 1 collaboration

Sameena Haleemath Sameer 1 collaboration

Johanna Lethin 1 collaboration

Shahriar S M Shakil 1 collaboration

Nick Sirijovski 1 collaboration

Olof Olsson 1 collaboration

Erica H Leder 1 collaboration

Alan Le Moan 1 collaboration

Jonathan N Havenhand 1 collaboration

Kai Lindström 1 collaboration

Filip A M Volckaert 1 collaboration

Charlotta Kvarnemo 1 collaboration

Ola Svensson 1 collaboration

Alvar Almstedt 1 collaboration

Emma L Berdan 1 collaboration

Fabian Roger 1 collaboration

Maren Wellenreuther 1 collaboration

Gunnar Cervin 1 collaboration

Ricardo Pereyra 1 collaboration

Roger K Butlin 1 collaboration

Nataly Allasi Canales 1 collaboration

Oscar A Pérez-Escobar 1 collaboration

Robyn F Powell 1 collaboration

Catherine Kidner 1 collaboration

Mark Nesbitt 1 collaboration

Carla Maldonado 1 collaboration

Christopher J Barnes 1 collaboration

Nina Rønsted 1 collaboration

Natalia A S Przelomska 1 collaboration

Ilia J Leitch 1 collaboration

Ricardo T Pereyra 1 collaboration

Marina Rafajlović 1 collaboration

Pierre De Wit 1 collaboration

Matthew Pinder 1 collaboration

Eveline Pinseel 1 collaboration

Teofil Nakov 1 collaboration

Koen Van den Berge 1 collaboration

Kala M Downey 1 collaboration

Kathryn J Judy 1 collaboration

Elizabeth C Ruck 1 collaboration

Conny Sjöqvist 1 collaboration

Andrew J Alverson 1 collaboration

Björn Andersson 1 collaboration

Olof Berglund 1 collaboration

Helena L Filipsson 1 collaboration

Lara Hoepfner 1 collaboration

Karin Rengefors 1 collaboration

Xiao-Huang Chen 1 collaboration

Ming-Kun Yang 1 collaboration

Yuan-Yuan Li 1 collaboration

Zhang-Xian Xie 1 collaboration

Shu-Feng Zhang 1 collaboration

Shady A Amin 1 collaboration

Lin Lin 1 collaboration

Feng Ge 1 collaboration

Da-Zhi Wang 1 collaboration

Irene Adrian-Kalchhauser 1 collaboration

Tomas Larsson 1 collaboration

Zuzana Musilova 1 collaboration

Claire R Peart 1 collaboration

Martin Pippel 1 collaboration

Monica Hongroe Solbakken 1 collaboration

Jaanus Suurväli 1 collaboration

Jean-Claude Walser 1 collaboration

Joanna Yvonne Wilson 1 collaboration

Magnus Alm Rosenblad 1 collaboration

Demian Burguera 1 collaboration

Silvia Gutnik 1 collaboration

Nico Michiels 1 collaboration

Kirill Pankov 1 collaboration

Siegfried Schloissnig 1 collaboration

Sylke Winkler 1 collaboration

Maria Immacolata Ferrante 1 collaboration

Laura Entrambasaguas 1 collaboration

Mathias Johansson 1 collaboration

Marina Montresor 1 collaboration

Fredrik Ohlsson 1 collaboration

Tobias Andermann 1 collaboration

Alexandre M Fernandes 1 collaboration

Urban Olsson 1 collaboration

Bernard Pfeil 1 collaboration

Bengt Oxelman 1 collaboration

Alexandre Aleixo 1 collaboration

Brant C Faircloth 1 collaboration

Jan Zrimec 1 collaboration

Christoph S Börlin 1 collaboration

Filip Buric 1 collaboration

Azam Sheikh Muhammad 1 collaboration

Rhongzen Chen 1 collaboration

Verena Siewers 1 collaboration

Vilhelm Verendel 1 collaboration

Jens Nielsen 1 collaboration

Aleksej Zelezniak 1 collaboration

Emilija Dukic 1 collaboration

Kim A van Maldegem 1 collaboration

Kashif Mohd Shaikh 1 collaboration

Kento Fukuda 1 collaboration

Katalin Solymosi 1 collaboration

Jonna Hellsten 1 collaboration

Thomas Hesselhøj Hansen 1 collaboration

Søren Husted 1 collaboration

John Higgins 1 collaboration

Satoshi Sano 1 collaboration

Sumio Ishijima 1 collaboration

Cornelia Spetea 1 collaboration