Mark J Pallen

Affiliations

Division of Microbiology & Immunity, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK.
Quadram Institute, Norwich Research Park, Norwich, Norfolk, NR4 7UA, UK.

ORCID: http://orcid.org/0000-0003-1807-3657

Publications (31)

Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali.

Scientific reports

Avec: Madikay Senghore , Bassirou Diarra , Florian Gehre , Jacob Otu , Archibald Worwui , Abdul Khalie Muhammad , Brenda Kwambana-Adams , Gemma L Kay , Moumine Sanogo , Bocar Baya , Susan Orsega , Seydou Doumbia , Souleymane Diallo , Bouke C de Jong , Mark J Pallen , Martin Antonio

The Next Million Names for Archaea and Bacteria.

Trends in microbiology

Avec: Mark J Pallen , Andrea Telatin , Aharon Oren

Bacterial nomenclature in the era of genomics.

New microbes and new infections

Avec: M J Pallen

Assembly of hundreds of novel bacterial genomes from the chicken caecum.

Genome biology

Avec: Laura Glendinning , Robert D Stewart , Mark J Pallen , Kellie A Watson , Mick Watson

Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patients.

Microbial genomics

Avec: Anuradha Ravi , Fenella D Halstead , Amy Bamford , Anna Casey , Nicholas M Thomson , Willem van Schaik , Catherine Snelson , Robert Goulden , Ebenezer Foster-Nyarko , George M Savva , Tony Whitehouse , Mark J Pallen , Beryl A Oppenheim

Restoration of wild-type motility to flagellin-knockout

Current research in biotechnology

Avec: Nicholas M Thomson , Mark J Pallen

Genomic diversity of

PeerJ

Avec: Ebenezer Foster-Nyarko , Nabil-Fareed Alikhan , Usman N Ikumapayi , Golam Sarwar , Catherine Okoi , Peggy-Estelle Maguiagueu Tientcheu , Marianne Defernez , Justin O'Grady , Martin Antonio , Mark J Pallen

The status

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen

Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome.

Communications biology

Avec: Anuradha Ravi , Perla Troncoso-Rey , Jennifer Ahn-Jarvis , Kendall R Corbin , Suzanne Harris , Hannah Harris , Alp Aydin , Gemma L Kay , Thanh Le Viet , Rachel Gilroy , Mark J Pallen , Andrew J Page , Justin O'Grady , Frederick J Warren

Proposal to add a Note to Rule 8 of the International Code of Nomenclature of Prokaryotes to clarify the meaning of the term 'stem'.

International journal of systematic and evolutionary microbiology

Avec: Aharon Oren , Marko Kostovski , Mark J Pallen

Metagenomic profiling of ticks: Identification of novel rickettsial genomes and detection of tick-borne canine parvovirus.

PLoS neglected tropical diseases

Avec: Anuradha Ravi , Suheir Ereqat , Amer Al-Jawabreh , Ziad Abdeen , Omar Abu Shamma , Holly Hall , Mark J Pallen , Abedelmajeed Nasereddin

Creation of Golden Gate constructs for gene doctoring.

BMC biotechnology

Avec: Nicholas M Thomson , Chuanzhen Zhang , Eleftheria Trampari , Mark J Pallen

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.

PeerJ

Avec: Rachel Gilroy , Anuradha Ravi , Maria Getino , Isabella Pursley , Daniel L Horton , Nabil-Fareed Alikhan , Dave Baker , Karim Gharbi , Neil Hall , Mick Watson , Evelien M Adriaenssens , Ebenezer Foster-Nyarko , Sheikh Jarju , Arss Secka , Martin Antonio , Aharon Oren , Roy R Chaudhuri , Roberto La Ragione , Falk Hildebrand , Mark J Pallen

Archaeal and Bacterial Metagenome-Assembled Genome Sequences Derived from Pig Feces.

Microbiology resource announcements

Avec: Matthew Crossfield , Rachel Gilroy , Anuradha Ravi , David Baker , Roberto M La Ragione , Mark J Pallen

An initial genomic blueprint of the healthy human oesophageal microbiome.

Access microbiology

Avec: Rachel Gilroy , Mina E Adam , Bhaskar Kumar , Mark J Pallen

Formation of prokaryote names from personal names: a review of current practice and a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes.

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen

The oesophageal microbiome and cancer: hope or hype?

Trends in microbiology

Avec: Bhaskar Kumar , Stephen Lam , Mina Adam , Rachel Gilroy , Mark J Pallen

Metagenomic investigation of the equine faecal microbiome reveals extensive taxonomic diversity.

PeerJ

Avec: Rachel Gilroy , Joy Leng , Anuradha Ravi , Evelien M Adriaenssens , Aharon Oren , Dave Baker , Roberto M La Ragione , Christopher Proudman , Mark J Pallen

The dynamic history of prokaryotic phyla: discovery, diversity and division.

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen

Remarkable genomic diversity among

PeerJ

Avec: Nicholas M Thomson , Rachel Gilroy , Maria Getino , Ebenezer Foster-Nyarko , Arnoud H M van Vliet , Roberto M La Ragione , Mark J Pallen

Request for an Opinion on the standing and retention of

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen

Organization and architecture of AggR-dependent promoters from enteroaggregative Escherichia coli.

Molecular microbiology

Avec: Muhammad Yasir , Christopher Icke , Radwa Abdelwahab , James R Haycocks , Rita E Godfrey , Pavelas Sazinas , Mark J Pallen , Ian R Henderson , Stephen J W Busby , Douglas F Browning

Microbial genomics

Avec: Julie Callanan , Stephen R Stockdale , Evelien M Adriaenssens , Jens H Kuhn , Janis Rumnieks , Mark J Pallen , Andrey N Shkoporov , Lorraine A Draper , R Paul Ross , Colin Hill

Genomic diversity of

Microbial genomics

Avec: Ebenezer Foster-Nyarko , Nabil-Fareed Alikhan , Anuradha Ravi , Nicholas M Thomson , Sheikh Jarju , Brenda A Kwambana-Adams , Arss Secka , Justin O'Grady , Martin Antonio , Mark John Pallen

Genomic diversity of

Microbial genomics

Avec: Ebenezer Foster-Nyarko , Nabil-Fareed Alikhan , Anuradha Ravi , Gaëtan Thilliez , Nicholas M Thomson , David Baker , Gemma Kay , Jennifer D Cramer , Justin O'Grady , Martin Antonio , Mark J Pallen

Whole-Genome Sequencing of

Frontiers in microbiology

Avec: Emma Stubberfield , Jonathan Sheldon , Roderick M Card , Manal AbuOun , Jon Rogers , Susanna Williamson , Gemma L Kay , Mark J Pallen , Muna F Anjum

The microbial ecology of Escherichia coli in the vertebrate gut.

FEMS microbiology reviews

Avec: Ebenezer Foster-Nyarko , Mark J Pallen

Naming the unnamed: over 65,000

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen , Luis M Rodriguez-R , Nabil-Fareed Alikhan

Use of connecting vowels after stems ending in the same vowel: a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes.

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen

Valid publication of names for bacterial species from the chicken gut.

International journal of systematic and evolutionary microbiology

Avec: Mark J Pallen

Epidemiological Characterization and Genetic Variation of the SARS-CoV-2 Delta Variant in Palestine.

Pathogens (Basel, Switzerland)

Avec: Suheir Ereqat , Nabil-Fareed Alikhan , Amer Al-Jawabreh , Michaela Matthews , Ahmed Al-Jawabreh , Leonardo de Oliveira Martins , Alexander J Trotter , Mai Al-Kaila , Andrew J Page , Mark J Pallen , Abedelmajeed Nasereddin

Réseau de co-auteurs

Anuradha Ravi 8 collaborations

Ebenezer Foster-Nyarko 7 collaborations

Rachel Gilroy 7 collaborations

Nicholas M Thomson 6 collaborations

Nabil-Fareed Alikhan 6 collaborations

Martin Antonio 5 collaborations

Aharon Oren 4 collaborations

Justin O'Grady 4 collaborations

Gemma L Kay 3 collaborations

Evelien M Adriaenssens 3 collaborations

Roberto M La Ragione 3 collaborations

Mick Watson 2 collaborations

Andrew J Page 2 collaborations

Suheir Ereqat 2 collaborations

Amer Al-Jawabreh 2 collaborations

Abedelmajeed Nasereddin 2 collaborations

Maria Getino 2 collaborations

Dave Baker 2 collaborations

Sheikh Jarju 2 collaborations

Arss Secka 2 collaborations

David Baker 2 collaborations

Bhaskar Kumar 2 collaborations

Madikay Senghore 1 collaboration

Bassirou Diarra 1 collaboration

Florian Gehre 1 collaboration

Jacob Otu 1 collaboration

Archibald Worwui 1 collaboration

Abdul Khalie Muhammad 1 collaboration

Brenda Kwambana-Adams 1 collaboration

Moumine Sanogo 1 collaboration

Bocar Baya 1 collaboration

Susan Orsega 1 collaboration

Seydou Doumbia 1 collaboration

Souleymane Diallo 1 collaboration

Bouke C de Jong 1 collaboration

Andrea Telatin 1 collaboration

M J Pallen 1 collaboration

Laura Glendinning 1 collaboration

Robert D Stewart 1 collaboration

Kellie A Watson 1 collaboration

Fenella D Halstead 1 collaboration

Amy Bamford 1 collaboration

Anna Casey 1 collaboration

Willem van Schaik 1 collaboration

Catherine Snelson 1 collaboration

Robert Goulden 1 collaboration

George M Savva 1 collaboration

Tony Whitehouse 1 collaboration

Beryl A Oppenheim 1 collaboration

Usman N Ikumapayi 1 collaboration

Golam Sarwar 1 collaboration

Catherine Okoi 1 collaboration

Peggy-Estelle Maguiagueu Tientcheu 1 collaboration

Marianne Defernez 1 collaboration

Perla Troncoso-Rey 1 collaboration

Jennifer Ahn-Jarvis 1 collaboration

Kendall R Corbin 1 collaboration

Suzanne Harris 1 collaboration

Hannah Harris 1 collaboration

Alp Aydin 1 collaboration

Thanh Le Viet 1 collaboration

Frederick J Warren 1 collaboration

Marko Kostovski 1 collaboration

Ziad Abdeen 1 collaboration

Omar Abu Shamma 1 collaboration

Holly Hall 1 collaboration

Chuanzhen Zhang 1 collaboration

Eleftheria Trampari 1 collaboration

Isabella Pursley 1 collaboration

Daniel L Horton 1 collaboration

Karim Gharbi 1 collaboration

Neil Hall 1 collaboration

Roy R Chaudhuri 1 collaboration

Roberto La Ragione 1 collaboration

Falk Hildebrand 1 collaboration

Matthew Crossfield 1 collaboration

Mina E Adam 1 collaboration

Stephen Lam 1 collaboration

Mina Adam 1 collaboration

Joy Leng 1 collaboration

Christopher Proudman 1 collaboration

Arnoud H M van Vliet 1 collaboration

Muhammad Yasir 1 collaboration

Christopher Icke 1 collaboration

Radwa Abdelwahab 1 collaboration

James R Haycocks 1 collaboration

Rita E Godfrey 1 collaboration

Pavelas Sazinas 1 collaboration

Ian R Henderson 1 collaboration

Stephen J W Busby 1 collaboration

Douglas F Browning 1 collaboration

Julie Callanan 1 collaboration

Stephen R Stockdale 1 collaboration

Jens H Kuhn 1 collaboration

Janis Rumnieks 1 collaboration

Andrey N Shkoporov 1 collaboration

Lorraine A Draper 1 collaboration

R Paul Ross 1 collaboration

Colin Hill 1 collaboration

Brenda A Kwambana-Adams 1 collaboration

Mark John Pallen 1 collaboration

Gaëtan Thilliez 1 collaboration

Gemma Kay 1 collaboration

Jennifer D Cramer 1 collaboration

Emma Stubberfield 1 collaboration

Jonathan Sheldon 1 collaboration

Roderick M Card 1 collaboration

Manal AbuOun 1 collaboration

Jon Rogers 1 collaboration

Susanna Williamson 1 collaboration

Muna F Anjum 1 collaboration

Luis M Rodriguez-R 1 collaboration

Michaela Matthews 1 collaboration

Ahmed Al-Jawabreh 1 collaboration

Leonardo de Oliveira Martins 1 collaboration

Alexander J Trotter 1 collaboration

Mai Al-Kaila 1 collaboration