Maria Anna Rapsomaniki

Affiliations
  • IBM Research Europe -Säumerstrasse 4, Rüschlikon CH-8803, Zurich, Switzerland.

Publications (8)

Quantification of tumor heterogeneity: from data acquisition to metric generation.

Trends in biotechnology
Avec: Aditya Kashyap , Maria Anna Rapsomaniki , Vesna Barros , Anna Fomitcheva-Khartchenko , Adriano Luca Martinelli , Antonio Foncubierta Rodriguez , Maria Gabrani , Michal Rosen-Zvi , Govind Kaigala

Spatial protein heterogeneity analysis in frozen tissues to evaluate tumor heterogeneity.

PloS one
Avec: Anna Fomitcheva-Khartchenko , Maria Anna Rapsomaniki , Bettina Sobottka , Peter Schraml , Govind V Kaigala

A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer.

Cell
Avec: Johanna Wagner , Maria Anna Rapsomaniki , Stéphane Chevrier , Tobias Anzeneder , Claus Langwieder , August Dykgers , Martin Rees , Annette Ramaswamy , Simone Muenst , Savas Deniz Soysal , Andrea Jacobs , Jonas Windhager , Karina Silina , Maries van den Broek , Konstantin Johannes Dedes , Maria Rodríguez Martínez , Walter Paul Weber , Bernd Bodenmiller

scQUEST: Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data.

STAR protocols
Avec: Adriano Luca Martinelli , Johanna Wagner , Bernd Bodenmiller , Maria Anna Rapsomaniki

NAR genomics and bioinformatics
Avec: Maria Anna Rapsomaniki , Stella Maxouri , Patroula Nathanailidou , Manuel Ramirez Garrastacho , Nickolaos Nikiforos Giakoumakis , Stavros Taraviras , John Lygeros , Zoi Lygerou

ATHENA: analysis of tumor heterogeneity from spatial omics measurements.

Bioinformatics (Oxford, England)
Avec: Adriano Luca Martinelli , Maria Anna Rapsomaniki

ScLinear predicts protein abundance at single-cell resolution.

Communications biology
Avec: Daniel Hanhart , Federico Gossi , Maria Anna Rapsomaniki , Marianna Kruithof-de Julio , Panagiotis Chouvardas

Matching single cells across modalities with contrastive learning and optimal transport.

Briefings in bioinformatics
Avec: Federico Gossi , Pushpak Pati , Panagiotis Chouvardas , Adriano Luca Martinelli , Marianna Kruithof-de Julio , Maria Anna Rapsomaniki

Réseau de co-auteurs

Adriano Luca Martinelli 4 collaborations
Anna Fomitcheva-Khartchenko 2 collaborations
Johanna Wagner 2 collaborations
Bernd Bodenmiller 2 collaborations
Federico Gossi 2 collaborations
Marianna Kruithof-de Julio 2 collaborations
Panagiotis Chouvardas 2 collaborations
Aditya Kashyap 1 collaboration
Vesna Barros 1 collaboration
Antonio Foncubierta Rodriguez 1 collaboration
Maria Gabrani 1 collaboration
Michal Rosen-Zvi 1 collaboration
Govind Kaigala 1 collaboration
Bettina Sobottka 1 collaboration
Peter Schraml 1 collaboration
Govind V Kaigala 1 collaboration
Stéphane Chevrier 1 collaboration
Tobias Anzeneder 1 collaboration
Claus Langwieder 1 collaboration
August Dykgers 1 collaboration
Martin Rees 1 collaboration
Annette Ramaswamy 1 collaboration
Simone Muenst 1 collaboration
Savas Deniz Soysal 1 collaboration
Andrea Jacobs 1 collaboration
Jonas Windhager 1 collaboration
Karina Silina 1 collaboration
Maries van den Broek 1 collaboration
Konstantin Johannes Dedes 1 collaboration
Maria Rodríguez Martínez 1 collaboration
Walter Paul Weber 1 collaboration
Stella Maxouri 1 collaboration
Patroula Nathanailidou 1 collaboration
Manuel Ramirez Garrastacho 1 collaboration
Nickolaos Nikiforos Giakoumakis 1 collaboration
Stavros Taraviras 1 collaboration
John Lygeros 1 collaboration
Zoi Lygerou 1 collaboration
Daniel Hanhart 1 collaboration
Pushpak Pati 1 collaboration