M Harastani

Affiliations

IMPMC-UMR 7590 CNRS, Sorbonne Université, MNHN, Paris, France.

ORCID: 0000-0001-9154-1109

Publications (10)

Hybrid Electron Microscopy Normal Mode Analysis with Scipion.

Protein science : a publication of the Protein Society

Avec: Mohamad Harastani , Carlos Oscar S Sorzano , Slavica Jonić

Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM.

Acta crystallographica. Section D, Structural biology

Avec: D Herreros , J M Krieger , Y Fonseca , P Conesa , M Harastani , R Vuillemot , I Hamitouche , R Serrano Gutiérrez , M Gragera , R Melero , S Jonic , J M Carazo , C O S Sorzano

ContinuousFlex: Software package for analyzing continuous conformational variability of macromolecules in cryo electron microscopy and tomography data.

Journal of structural biology

Avec: Mohamad Harastani , Rémi Vuillemot , Ilyes Hamitouche , Nima Barati Moghadam , Slavica Jonic

MDSPACE: Extracting Continuous Conformational Landscapes from Cryo-EM Single Particle Datasets Using 3D-to-2D Flexible Fitting based on Molecular Dynamics Simulation.

Journal of molecular biology

Avec: Rémi Vuillemot , Alex Mirzaei , Mohamad Harastani , Ilyes Hamitouche , Léo Fréchin , Bruno P Klaholz , Osamu Miyashita , Florence Tama , Isabelle Rouiller , Slavica Jonic

Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.

Molecules (Basel, Switzerland)

Avec: David Strelak , Amaya Jiménez-Moreno , José L Vilas , Erney Ramírez-Aportela , Ruben Sánchez-García , David Maluenda , Javier Vargas , David Herreros , Estrella Fernández-Giménez , Federico P de Isidro-Gómez , Jan Horacek , David Myska , Martin Horacek , Pablo Conesa , Yunior C Fonseca-Reyna , Jorge Jiménez , Marta Martínez , Mohamad Harastani , Slavica Jonić , Jiri Filipovic , Roberto Marabini , José M Carazo , Carlos O S Sorzano

HEMNMA-3D: Cryo Electron Tomography Method Based on Normal Mode Analysis to Study Continuous Conformational Variability of Macromolecular Complexes.

Frontiers in molecular biosciences

Avec: Mohamad Harastani , Mikhail Eltsov , Amélie Leforestier , Slavica Jonic

Methamphetamine drug abuse and addiction: Effects on face asymmetry.

Computers in biology and medicine

Avec: Mohamad Harastani , Amine Benterkia , Farnaz Majid Zadeh , Amine Nait-Ali

ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation.

Journal of structural biology

Avec: J Jiménez de la Morena , P Conesa , Y C Fonseca , F P de Isidro-Gómez , D Herreros , E Fernández-Giménez , D Strelak , E Moebel , T O Buchholz , F Jug , A Martinez-Sanchez , M Harastani , S Jonic , J J Conesa , A Cuervo , P Losana , I Sánchez , M Iceta , L Del Cano , M Gragera , R Melero , G Sharov , D Castaño-Díez , A Koster , J G Piccirillo , J L Vilas , J Otón , R Marabini , C O S Sorzano , J M Carazo

TomoFlow: Analysis of Continuous Conformational Variability of Macromolecules in Cryogenic Subtomograms based on 3D Dense Optical Flow.

Journal of molecular biology

Avec: Mohamad Harastani , Mikhail Eltsov , Amélie Leforestier , Slavica Jonic

MDSPACE and MDTOMO Software for Extracting Continuous Conformational Landscapes from Datasets of Single Particle Images and Subtomograms Based on Molecular Dynamics Simulations: Latest Developments in ContinuousFlex Software Package.

International journal of molecular sciences

Avec: Rémi Vuillemot , Mohamad Harastani , Ilyes Hamitouche , Slavica Jonic

Réseau de co-auteurs

Mohamad Harastani 8 collaborations

Slavica Jonic 5 collaborations

Rémi Vuillemot 3 collaborations

Ilyes Hamitouche 3 collaborations

Slavica Jonić 2 collaborations

D Herreros 2 collaborations

P Conesa 2 collaborations

M Gragera 2 collaborations

R Melero 2 collaborations

S Jonic 2 collaborations

J M Carazo 2 collaborations

C O S Sorzano 2 collaborations

Mikhail Eltsov 2 collaborations

Amélie Leforestier 2 collaborations

Carlos Oscar S Sorzano 1 collaboration

J M Krieger 1 collaboration

Y Fonseca 1 collaboration

R Vuillemot 1 collaboration

I Hamitouche 1 collaboration

R Serrano Gutiérrez 1 collaboration

Nima Barati Moghadam 1 collaboration

Alex Mirzaei 1 collaboration

Léo Fréchin 1 collaboration

Bruno P Klaholz 1 collaboration

Osamu Miyashita 1 collaboration

Florence Tama 1 collaboration

Isabelle Rouiller 1 collaboration

David Strelak 1 collaboration

Amaya Jiménez-Moreno 1 collaboration

José L Vilas 1 collaboration

Erney Ramírez-Aportela 1 collaboration

Ruben Sánchez-García 1 collaboration

David Maluenda 1 collaboration

Javier Vargas 1 collaboration

David Herreros 1 collaboration

Estrella Fernández-Giménez 1 collaboration

Federico P de Isidro-Gómez 1 collaboration

Jan Horacek 1 collaboration

David Myska 1 collaboration

Martin Horacek 1 collaboration

Pablo Conesa 1 collaboration

Yunior C Fonseca-Reyna 1 collaboration

Jorge Jiménez 1 collaboration

Marta Martínez 1 collaboration

Jiri Filipovic 1 collaboration

Roberto Marabini 1 collaboration

José M Carazo 1 collaboration

Carlos O S Sorzano 1 collaboration

Amine Benterkia 1 collaboration

Farnaz Majid Zadeh 1 collaboration

Amine Nait-Ali 1 collaboration

J Jiménez de la Morena 1 collaboration

Y C Fonseca 1 collaboration

F P de Isidro-Gómez 1 collaboration

E Fernández-Giménez 1 collaboration

D Strelak 1 collaboration

E Moebel 1 collaboration

T O Buchholz 1 collaboration

F Jug 1 collaboration

A Martinez-Sanchez 1 collaboration

J J Conesa 1 collaboration

A Cuervo 1 collaboration

P Losana 1 collaboration

I Sánchez 1 collaboration

M Iceta 1 collaboration

L Del Cano 1 collaboration

G Sharov 1 collaboration

D Castaño-Díez 1 collaboration

A Koster 1 collaboration

J G Piccirillo 1 collaboration

J L Vilas 1 collaboration

J Otón 1 collaboration

R Marabini 1 collaboration