Jim Leebens-Mack

Affiliations

Department of Plant Biology, University of Georgia, Athens, GA, 30602, USA.

ORCID: 0000-0003-4811-2231

Publications (20)

Differential timing of gene expression and recruitment in independent origins of CAM in the Agavoideae (Asparagaceae).

The New phytologist

Avec: Karolina Heyduk , Edward V McAssey , Jim Leebens-Mack

Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.

Genome biology and evolution

Avec: Prakash Raj Timilsena , Craig F Barrett , Alma Piñeyro-Nelson , Eric K Wafula , Saravanaraj Ayyampalayam , Joel R McNeal , Tomohisa Yukawa , Thomas J Givnish , Sean W Graham , J Chris Pires , Jerrold I Davis , Cécile Ané , Dennis W Stevenson , Jim Leebens-Mack , Esteban Martínez-Salas , Elena R Álvarez-Buylla , Claude W dePamphilis

Young evolutionary origins of dioecy in the genus Asparagus.

American journal of botany

Avec: Philip C Bentz , Zhengjie Liu , Jun-Bo Yang , Le Zhang , Sandra Burrows , John Burrows , Akira Kanno , Zichao Mao , Jim Leebens-Mack

Sex Determination by Two Y-Linked Genes in Garden Asparagus.

The Plant cell

Avec: Alex Harkess , Kun Huang , Ron van der Hulst , Bart Tissen , Jeffrey L Caplan , Aakash Koppula , Mona Batish , Blake C Meyers , Jim Leebens-Mack

Representing sex chromosomes in genome assemblies.

Cell genomics

Avec: Sarah B Carey , John T Lovell , Jerry Jenkins , Jim Leebens-Mack , Jeremy Schmutz , Melissa A Wilson , Alex Harkess

Interchromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance.

The New phytologist

Avec: Sonal Gupta , Alex Harkess , Anah Soble , Megan Van Etten , James Leebens-Mack , Regina S Baucom

Unlocking saponin biosynthesis in soapwort.

Nature chemical biology

Avec: Seohyun Jo , Amr El-Demerdash , Charlotte Owen , Vikas Srivastava , Dewei Wu , Shingo Kikuchi , James Reed , Hannah Hodgson , Alex Harkess , Shengqiang Shu , Chris Plott , Jerry Jenkins , Melissa Williams , Lori-Beth Boston , Elia Lacchini , Tongtong Qu , Alain Goossens , Jane Grimwood , Jeremy Schmutz , Jim Leebens-Mack , Anne Osbourn

Bursts of rapid diversification, dispersals out of southern Africa, and two origins of dioecy punctuate the evolution of Asparagus.

Genome biology and evolution

Avec: Philip C Bentz , John E Burrows , Sandra M Burrows , Eshchar Mizrachi , Zhengjie Liu , Jun-Bo Yang , Zichao Mao , Margot Popecki , Ole Seberg , Gitte Petersen , Jim Leebens-Mack

Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca.

Journal of experimental botany

Avec: Karolina Heyduk , Jeremy N Ray , Saaravanaraj Ayyampalayam , Nida Moledina , Anne Borland , Scott A Harding , Chung-Jui Tsai , Jim Leebens-Mack

Leaf anatomy is not correlated to CAM function in a C3+CAM hybrid species, Yucca gloriosa.

Annals of botany

Avec: Karolina Heyduk , Jeremy N Ray , Jim Leebens-Mack

Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.

Frontiers in plant science

Avec: Prakash Raj Timilsena , Eric K Wafula , Craig F Barrett , Saravanaraj Ayyampalayam , Joel R McNeal , Jeremy D Rentsch , Michael R McKain , Karolina Heyduk , Alex Harkess , Matthieu Villegente , John G Conran , Nicola Illing , Bruno Fogliani , Cécile Ané , J Chris Pires , Jerrold I Davis , Wendy B Zomlefer , Dennis W Stevenson , Sean W Graham , Thomas J Givnish , James Leebens-Mack , Claude W dePamphilis

Complex scaffold remodeling in plant triterpene biosynthesis.

Science (New York, N.Y.)

Avec: Ricardo De La Peña , Hannah Hodgson , Jack Chun-Ting Liu , Michael J Stephenson , Azahara C Martin , Charlotte Owen , Alex Harkess , Jim Leebens-Mack , Luis E Jimenez , Anne Osbourn , Elizabeth S Sattely

Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants.

Annual review of plant biology

Avec: Gane Ka-Shu Wong , Douglas E Soltis , Jim Leebens-Mack , Norman J Wickett , Michael S Barker , Yves Van de Peer , Sean W Graham , Michael Melkonian

A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants.

The New phytologist

Avec: Jos Käfer , Adam Bewick , Amélie Andres-Robin , Garance Lapetoule , Alex Harkess , José Caïus , Bruno Fogliani , Gildas Gâteblé , Paula Ralph , Claude W dePamphilis , Franck Picard , Charlie Scutt , Gabriel A B Marais , James Leebens-Mack

Elucidation of the pathway for biosynthesis of saponin adjuvants from the soapbark tree.

Science (New York, N.Y.)

Avec: James Reed , Anastasia Orme , Amr El-Demerdash , Charlotte Owen , Laetitia B B Martin , Rajesh C Misra , Shingo Kikuchi , Martin Rejzek , Azahara C Martin , Alex Harkess , Jim Leebens-Mack , Thomas Louveau , Michael J Stephenson , Anne Osbourn

From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes.

Scientific reports

Avec: Qiaoji Xu , Lingling Jin , Chunfang Zheng , Xiaomeng Zhang , James Leebens-Mack , David Sankoff

Distributed phenomics with the unPAK project reveals the effects of mutations.

The Plant journal : for cell and molecular biology

Avec: Matthew T Rutter , Courtney J Murren , Hilary S Callahan , April M Bisner , Jim Leebens-Mack , Michael J Wolyniak , Allan E Strand

Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid,

Frontiers in plant science

Avec: Karolina Heyduk , Edward V McAssey , Jane Grimwood , Shengqiang Shu , Jeremy Schmutz , Michael R McKain , Jim Leebens-Mack

Rampant chloroplast capture in Sarracenia revealed by plastome phylogeny.

Frontiers in plant science

Avec: Ethan Baldwin , Mason McNair , Jim Leebens-Mack

The Agavoideae: an emergent model clade for CAM evolutionary biology.

Annals of botany

Avec: Karolina Heyduk , Edward McAssey , Richard Field , Jim Leebens-Mack

Réseau de co-auteurs

Alex Harkess 8 collaborations

Karolina Heyduk 6 collaborations

James Leebens-Mack 4 collaborations

Sean W Graham 3 collaborations

Claude W dePamphilis 3 collaborations

Jeremy Schmutz 3 collaborations

Charlotte Owen 3 collaborations

Anne Osbourn 3 collaborations

Edward V McAssey 2 collaborations

Prakash Raj Timilsena 2 collaborations

Craig F Barrett 2 collaborations

Eric K Wafula 2 collaborations

Saravanaraj Ayyampalayam 2 collaborations

Joel R McNeal 2 collaborations

Thomas J Givnish 2 collaborations

J Chris Pires 2 collaborations

Jerrold I Davis 2 collaborations

Cécile Ané 2 collaborations

Dennis W Stevenson 2 collaborations

Philip C Bentz 2 collaborations

Zhengjie Liu 2 collaborations

Jun-Bo Yang 2 collaborations

Zichao Mao 2 collaborations

Jerry Jenkins 2 collaborations

Amr El-Demerdash 2 collaborations

Shingo Kikuchi 2 collaborations

James Reed 2 collaborations

Hannah Hodgson 2 collaborations

Shengqiang Shu 2 collaborations

Jane Grimwood 2 collaborations

Jeremy N Ray 2 collaborations

Michael R McKain 2 collaborations

Bruno Fogliani 2 collaborations

Michael J Stephenson 2 collaborations

Azahara C Martin 2 collaborations

Alma Piñeyro-Nelson 1 collaboration

Tomohisa Yukawa 1 collaboration

Esteban Martínez-Salas 1 collaboration

Elena R Álvarez-Buylla 1 collaboration

Le Zhang 1 collaboration

Sandra Burrows 1 collaboration

John Burrows 1 collaboration

Akira Kanno 1 collaboration

Kun Huang 1 collaboration

Ron van der Hulst 1 collaboration

Bart Tissen 1 collaboration

Jeffrey L Caplan 1 collaboration

Aakash Koppula 1 collaboration

Mona Batish 1 collaboration

Blake C Meyers 1 collaboration

Sarah B Carey 1 collaboration

John T Lovell 1 collaboration

Melissa A Wilson 1 collaboration

Sonal Gupta 1 collaboration

Anah Soble 1 collaboration

Megan Van Etten 1 collaboration

Regina S Baucom 1 collaboration

Seohyun Jo 1 collaboration

Vikas Srivastava 1 collaboration

Dewei Wu 1 collaboration

Chris Plott 1 collaboration

Melissa Williams 1 collaboration

Lori-Beth Boston 1 collaboration

Elia Lacchini 1 collaboration

Tongtong Qu 1 collaboration

Alain Goossens 1 collaboration

John E Burrows 1 collaboration

Sandra M Burrows 1 collaboration

Eshchar Mizrachi 1 collaboration

Margot Popecki 1 collaboration

Ole Seberg 1 collaboration

Gitte Petersen 1 collaboration

Saaravanaraj Ayyampalayam 1 collaboration

Nida Moledina 1 collaboration

Anne Borland 1 collaboration

Scott A Harding 1 collaboration

Chung-Jui Tsai 1 collaboration

Jeremy D Rentsch 1 collaboration

Matthieu Villegente 1 collaboration

John G Conran 1 collaboration

Nicola Illing 1 collaboration

Wendy B Zomlefer 1 collaboration

Ricardo De La Peña 1 collaboration

Jack Chun-Ting Liu 1 collaboration

Luis E Jimenez 1 collaboration

Elizabeth S Sattely 1 collaboration

Gane Ka-Shu Wong 1 collaboration

Douglas E Soltis 1 collaboration

Norman J Wickett 1 collaboration

Michael S Barker 1 collaboration

Yves Van de Peer 1 collaboration

Michael Melkonian 1 collaboration

Jos Käfer 1 collaboration

Adam Bewick 1 collaboration

Amélie Andres-Robin 1 collaboration

Garance Lapetoule 1 collaboration

José Caïus 1 collaboration

Gildas Gâteblé 1 collaboration

Paula Ralph 1 collaboration

Franck Picard 1 collaboration

Charlie Scutt 1 collaboration

Gabriel A B Marais 1 collaboration

Anastasia Orme 1 collaboration

Laetitia B B Martin 1 collaboration

Rajesh C Misra 1 collaboration

Martin Rejzek 1 collaboration

Thomas Louveau 1 collaboration

Qiaoji Xu 1 collaboration

Lingling Jin 1 collaboration

Chunfang Zheng 1 collaboration

Xiaomeng Zhang 1 collaboration

David Sankoff 1 collaboration

Matthew T Rutter 1 collaboration

Courtney J Murren 1 collaboration

Hilary S Callahan 1 collaboration

April M Bisner 1 collaboration

Michael J Wolyniak 1 collaboration

Allan E Strand 1 collaboration

Ethan Baldwin 1 collaboration

Mason McNair 1 collaboration

Edward McAssey 1 collaboration

Richard Field 1 collaboration