Hosein Toosi

Affiliations

School of EECS and SciLifeLab, KTH Royal Institute of Technology, Stockholm, Sweden.

Publications (9)

CopyVAE: a variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics.

Bioinformatics (Oxford, England)

Avec: Semih Kurt , Mandi Chen , Hosein Toosi , Xinsong Chen , Camilla Engblom , Jeff Mold , Johan Hartman , Jens Lagergren

Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope.

Nature communications

Avec: Shadi Shafighi , Agnieszka Geras , Barbara Jurzysta , Alireza Sahaf Naeini , Igor Filipiuk , Alicja Ra Czkowska , Hosein Toosi , Łukasz Koperski , Kim Thrane , Camilla Engblom , Jeff E Mold , Xinsong Chen , Johan Hartman , Dominika Nowis , Alessandra Carbone , Jens Lagergren , Ewa Szczurek

BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.

BMC bioinformatics

Avec: Hosein Toosi , Ali Moeini , Iman Hajirasouliha

Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data.

Genome biology

Avec: Agnieszka Geras , Shadi Darvish Shafighi , Kacper Domżał , Igor Filipiuk , Alicja Rączkowska , Paulina Szymczak , Hosein Toosi , Leszek Kaczmarek , Łukasz Koperski , Jens Lagergren , Dominika Nowis , Ewa Szczurek

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.

Nature communications

Avec: Seong-Hwan Jun , Hosein Toosi , Jeff Mold , Camilla Engblom , Xinsong Chen , Ciara O'Flanagan , Michael Hagemann-Jensen , Rickard Sandberg , Samuel Aparicio , Johan Hartman , Andrew Roth , Jens Lagergren

PIK3CA mutations in endocrine-resistant breast cancer.

Scientific reports

Avec: Caroline Schagerholm , Stephanie Robertson , Hosein Toosi , Emmanouil G Sifakis , Johan Hartman

Seroprevalence of Hepatitis C Virus among Prisoners in Lakan Prison, North of Iran, Is There Still a Concern?

Archives of Iranian medicine

Avec: Zahra Mohtasham-Amiri , Seyed Mahmoud Rezvani , Farhad Ashoori , Mohsen Behboodi , Hasan Toosi , Reza Jafari-Shakib

Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics.

Science (New York, N.Y.)

Avec: Camilla Engblom , Kim Thrane , Qirong Lin , Alma Andersson , Hosein Toosi , Xinsong Chen , Embla Steiner , Chang Lu , Giulia Mantovani , Michael Hagemann-Jensen , Sami Saarenpää , Mattias Jangard , Julio Saez-Rodriguez , Jakob Michaëlsson , Johan Hartman , Jens Lagergren , Jeff E Mold , Joakim Lundeberg , Jonas Frisén

Clonally heritable gene expression imparts a layer of diversity within cell types.

Cell systems

Avec: Jeff E Mold , Martin H Weissman , Michael Ratz , Michael Hagemann-Jensen , Joanna Hård , Carl-Johan Eriksson , Hosein Toosi , Joseph Berghenstråhle , Christoph Ziegenhain , Leonie von Berlin , Marcel Martin , Kim Blom , Jens Lagergren , Joakim Lundeberg , Rickard Sandberg , Jakob Michaëlsson , Jonas Frisén

Réseau de co-auteurs

Jens Lagergren 6 collaborations

Johan Hartman 5 collaborations

Xinsong Chen 4 collaborations

Camilla Engblom 4 collaborations

Jeff E Mold 3 collaborations

Michael Hagemann-Jensen 3 collaborations

Jeff Mold 2 collaborations

Agnieszka Geras 2 collaborations

Igor Filipiuk 2 collaborations

Łukasz Koperski 2 collaborations

Kim Thrane 2 collaborations

Dominika Nowis 2 collaborations

Ewa Szczurek 2 collaborations

Rickard Sandberg 2 collaborations

Jakob Michaëlsson 2 collaborations

Joakim Lundeberg 2 collaborations

Jonas Frisén 2 collaborations

Semih Kurt 1 collaboration

Mandi Chen 1 collaboration

Shadi Shafighi 1 collaboration

Barbara Jurzysta 1 collaboration

Alireza Sahaf Naeini 1 collaboration

Alicja Ra Czkowska 1 collaboration

Alessandra Carbone 1 collaboration

Ali Moeini 1 collaboration

Iman Hajirasouliha 1 collaboration

Shadi Darvish Shafighi 1 collaboration

Kacper Domżał 1 collaboration

Alicja Rączkowska 1 collaboration

Paulina Szymczak 1 collaboration

Leszek Kaczmarek 1 collaboration

Seong-Hwan Jun 1 collaboration

Ciara O'Flanagan 1 collaboration

Samuel Aparicio 1 collaboration

Andrew Roth 1 collaboration

Caroline Schagerholm 1 collaboration

Stephanie Robertson 1 collaboration

Emmanouil G Sifakis 1 collaboration

Zahra Mohtasham-Amiri 1 collaboration

Seyed Mahmoud Rezvani 1 collaboration

Farhad Ashoori 1 collaboration

Mohsen Behboodi 1 collaboration

Hasan Toosi 1 collaboration

Reza Jafari-Shakib 1 collaboration

Qirong Lin 1 collaboration

Alma Andersson 1 collaboration

Embla Steiner 1 collaboration

Chang Lu 1 collaboration

Giulia Mantovani 1 collaboration

Sami Saarenpää 1 collaboration

Mattias Jangard 1 collaboration

Julio Saez-Rodriguez 1 collaboration

Martin H Weissman 1 collaboration

Michael Ratz 1 collaboration

Joanna Hård 1 collaboration

Carl-Johan Eriksson 1 collaboration

Joseph Berghenstråhle 1 collaboration

Christoph Ziegenhain 1 collaboration

Leonie von Berlin 1 collaboration

Marcel Martin 1 collaboration

Kim Blom 1 collaboration