Honda Naoki

Affiliations

Laboratory of Data-Driven Biology, Graduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan. nhonda@hiroshima-u.ac.jp.
Kansei-Brain Informatics Group, Center for Brain, Mind and Kansei Sciences Research, Hiroshima University, Hiroshima, Japan. nhonda@hiroshima-u.ac.jp.
Theoretical Biology Research Group, Exploratory Research Center on Life and Living Systems, National Institutes of Natural Sciences, Okazaki, Japan. nhonda@hiroshima-u.ac.jp.
Laboratory of Theoretical Biology, Graduate School of Biostudies, Kyoto University, Kyoto, Japan. nhonda@hiroshima-u.ac.jp.

ORCID: http://orcid.org/0000-0001-6816-9126

Publications (15)

Decoding reward-curiosity conflict in decision-making from irrational behaviors.

Nature computational science

Avec: Yuki Konaka , Honda Naoki

Regulation of male germline transmission patterns by the Trp53-Cdkn1a pathway.

Stem cell reports

Avec: Mito Kanatsu-Shinohara , Honda Naoki , Takashi Tanaka , Misako Tatehana , Takako Kikkawa , Noriko Osumi , Takashi Shinohara

Hierarchical modeling of mechano-chemical dynamics of epithelial sheets across cells and tissue.

Scientific reports

Avec: Yoshifumi Asakura , Yohei Kondo , Kazuhiro Aoki , Honda Naoki

Stem cell homeostasis regulated by hierarchy and neutral competition.

Communications biology

Avec: Asahi Nakamuta , Kana Yoshido , Honda Naoki

Dopamine error signal to actively cope with lack of expected reward.

Science advances

Avec: Seiya Ishino , Taisuke Kamada , Gideon A Sarpong , Julia Kitano , Reo Tsukasa , Hisa Mukohira , Fangmiao Sun , Yulong Li , Kenta Kobayashi , Honda Naoki , Naoya Oishi , Masaaki Ogawa

Optimal COVID-19 testing strategy on limited resources.

PloS one

Avec: Onishi Tatsuki , Honda Naoki , Yasunobu Igarashi

Few-shot prediction of amyloid β accumulation from mainly unpaired data on biomarker candidates.

NPJ systems biology and applications

Avec: Yuichiro Yada , Honda Naoki

Noise-resistant developmental reproducibility in vertebrate somite formation.

PLoS computational biology

Avec: Honda Naoki , Ryutaro Akiyama , Dini Wahyu Kartika Sari , Shin Ishii , Yasumasa Bessho , Takaaki Matsui

A transcriptional program underlying the circannual rhythms of gonadal development in medaka.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Tomoya Nakayama , Miki Tanikawa , Yuki Okushi , Thoma Itoh , Tsuyoshi Shimmura , Michiyo Maruyama , Taiki Yamaguchi , Akiko Matsumiya , Ai Shinomiya , Ying-Jey Guh , Junfeng Chen , Kiyoshi Naruse , Hiroshi Kudoh , Yohei Kondo , Honda Naoki , Kazuhiro Aoki , Atsushi J Nagano , Takashi Yoshimura

Adaptive discrimination between harmful and harmless antigens in the immune system by predictive coding.

iScience

Avec: Kana Yoshido , Honda Naoki

Single-cell transcriptome atlas of Drosophila gastrula 2.0.

Cell reports

Avec: Shunta Sakaguchi , Sonoko Mizuno , Yasushi Okochi , Chiharu Tanegashima , Osamu Nishimura , Tadashi Uemura , Mitsutaka Kadota , Honda Naoki , Takefumi Kondo

Somite boundary determination in normal and clock-less vertebrate embryos.

Development, growth & differentiation

Avec: Honda Naoki , Takaaki Matsui

Model-based prediction of spatial gene expression via generative linear mapping.

Nature communications

Avec: Yasushi Okochi , Shunta Sakaguchi , Ken Nakae , Takefumi Kondo , Honda Naoki

Intercellular exchange of Wnt ligands reduces cell population heterogeneity during embryogenesis.

Nature communications

Avec: Yudai Hatakeyama , Nen Saito , Yusuke Mii , Ritsuko Takada , Takuma Shinozuka , Tatsuya Takemoto , Honda Naoki , Shinji Takada

Machine learning-guided reconstruction of cytoskeleton network from live-cell AFM images.

iScience

Avec: Hanqiu Ju , Henrik Skibbe , Masaya Fukui , Shige H Yoshimura , Honda Naoki

Réseau de co-auteurs

Yohei Kondo 2 collaborations

Kazuhiro Aoki 2 collaborations

Kana Yoshido 2 collaborations

Takaaki Matsui 2 collaborations

Shunta Sakaguchi 2 collaborations

Yasushi Okochi 2 collaborations

Takefumi Kondo 2 collaborations

Yuki Konaka 1 collaboration

Mito Kanatsu-Shinohara 1 collaboration

Takashi Tanaka 1 collaboration

Misako Tatehana 1 collaboration

Takako Kikkawa 1 collaboration

Noriko Osumi 1 collaboration

Takashi Shinohara 1 collaboration

Yoshifumi Asakura 1 collaboration

Asahi Nakamuta 1 collaboration

Seiya Ishino 1 collaboration

Taisuke Kamada 1 collaboration

Gideon A Sarpong 1 collaboration

Julia Kitano 1 collaboration

Reo Tsukasa 1 collaboration

Hisa Mukohira 1 collaboration

Fangmiao Sun 1 collaboration

Yulong Li 1 collaboration

Kenta Kobayashi 1 collaboration

Naoya Oishi 1 collaboration

Masaaki Ogawa 1 collaboration

Onishi Tatsuki 1 collaboration

Yasunobu Igarashi 1 collaboration

Yuichiro Yada 1 collaboration

Ryutaro Akiyama 1 collaboration

Dini Wahyu Kartika Sari 1 collaboration

Shin Ishii 1 collaboration

Yasumasa Bessho 1 collaboration

Tomoya Nakayama 1 collaboration

Miki Tanikawa 1 collaboration

Yuki Okushi 1 collaboration

Thoma Itoh 1 collaboration

Tsuyoshi Shimmura 1 collaboration

Michiyo Maruyama 1 collaboration

Taiki Yamaguchi 1 collaboration

Akiko Matsumiya 1 collaboration

Ai Shinomiya 1 collaboration

Ying-Jey Guh 1 collaboration

Junfeng Chen 1 collaboration

Kiyoshi Naruse 1 collaboration

Hiroshi Kudoh 1 collaboration

Atsushi J Nagano 1 collaboration

Takashi Yoshimura 1 collaboration

Sonoko Mizuno 1 collaboration

Chiharu Tanegashima 1 collaboration

Osamu Nishimura 1 collaboration

Tadashi Uemura 1 collaboration

Mitsutaka Kadota 1 collaboration

Ken Nakae 1 collaboration

Yudai Hatakeyama 1 collaboration

Nen Saito 1 collaboration

Yusuke Mii 1 collaboration

Ritsuko Takada 1 collaboration

Takuma Shinozuka 1 collaboration

Tatsuya Takemoto 1 collaboration

Shinji Takada 1 collaboration

Hanqiu Ju 1 collaboration

Henrik Skibbe 1 collaboration

Masaya Fukui 1 collaboration

Shige H Yoshimura 1 collaboration