Greg Gydush

Affiliations

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

Publications (10)

FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA.

bioRxiv : the preprint server for biology

Avec: Yaping Liu , Sarah C Reed , Christopher Lo , Atish D Choudhury , Heather A Parsons , Daniel G Stover , Gavin Ha , Gregory Gydush , Justin Rhoades , Denisse Rotem , Samuel Freeman , David Katz , Ravi Bandaru , Haizi Zheng , Hailu Fu , Viktor A Adalsteinsson , Manolis Kellis

A nuclease-polymerase chain reaction enables amplification of probes used for capture-based DNA target enrichment.

Nucleic acids research

Avec: Ka Wai Leong , Fangyan Yu , Viktor A Adalsteinsson , Sarah Reed , Gregory Gydush , Ioannis Ladas , Jiang Li , Kelan G Tantisira , Gerassimos Mike Makrigiorgos

Detection of Leptomeningeal Disease Using Cell-Free DNA From Cerebrospinal Fluid.

JAMA network open

Avec: Michael D White , Robert H Klein , Brian Shaw , Albert Kim , Megha Subramanian , Joana L Mora , Anita Giobbie-Hurder , Deepika Nagabhushan , Aarushi Jain , Mohini Singh , Benjamin M Kuter , Naema Nayyar , Mia S Bertalan , Jackson H Stocking , Samuel C Markson , Matthew Lastrapes , Christopher Alvarez-Breckenridge , Daniel P Cahill , Gregory Gydush , Justin Rhoades , Denisse Rotem , Viktor A Adalsteinsson , Maura Mahar , Alexander Kaplan , Kevin Oh , Ryan J Sullivan , Elizabeth Gerstner , Scott L Carter , Priscilla K Brastianos

Liquid biopsy detection of genomic alterations in pediatric brain tumors from cell-free DNA in peripheral blood, CSF, and urine.

Neuro-oncology

Avec: Mélanie Pagès , Denisse Rotem , Gregory Gydush , Sarah Reed , Justin Rhoades , Gavin Ha , Christopher Lo , Mark Fleharty , Madeleine Duran , Robert Jones , Sarah Becker , Michaela Haller , Claire E Sinai , Liliana Goumnerova , Todd R Golub , J Christopher Love , Keith L Ligon , Karen D Wright , Viktor A Adalsteinsson , Rameen Beroukhim , Pratiti Bandopadhayay

Massively parallel enrichment of low-frequency alleles enables duplex sequencing at low depth.

Nature biomedical engineering

Avec: Gregory Gydush , Erica Nguyen , Jin H Bae , Timothy Blewett , Justin Rhoades , Sarah C Reed , Douglas Shea , Kan Xiong , Ruolin Liu , Fangyan Yu , Ka Wai Leong , Atish D Choudhury , Daniel G Stover , Sara M Tolaney , Ian E Krop , J Christopher Love , Heather A Parsons , G Mike Makrigiorgos , Todd R Golub , Viktor A Adalsteinsson

Single duplex DNA sequencing with CODEC detects mutations with high sensitivity.

Nature genetics

Avec: Jin H Bae , Ruolin Liu , Eugenia Roberts , Erica Nguyen , Shervin Tabrizi , Justin Rhoades , Timothy Blewett , Kan Xiong , Gregory Gydush , Douglas Shea , Zhenyi An , Sahil Patel , Ju Cheng , Sainetra Sridhar , Mei Hong Liu , Emilie Lassen , Anne-Bine Skytte , Marta Grońska-Pęski , Jonathan E Shoag , Gilad D Evrony , Heather A Parsons , Erica L Mayer , G Mike Makrigiorgos , Todd R Golub , Viktor A Adalsteinsson

Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring.

Nature medicine

Avec: Asaf Zviran , Rafael C Schulman , Minita Shah , Steven T K Hill , Sunil Deochand , Cole C Khamnei , Dillon Maloney , Kristofer Patel , Will Liao , Adam J Widman , Phillip Wong , Margaret K Callahan , Gavin Ha , Sarah Reed , Denisse Rotem , Dennie Frederick , Tatyana Sharova , Benchun Miao , Tommy Kim , Greg Gydush , Justin Rhoades , Kevin Y Huang , Nathaniel D Omans , Patrick O Bolan , Andrew H Lipsky , Chelston Ang , Murtaza Malbari , Catherine F Spinelli , Selena Kazancioglu , Alexi M Runnels , Samantha Fennessey , Christian Stolte , Federico Gaiti , Giorgio G Inghirami , Viktor Adalsteinsson , Brian Houck-Loomis , Jennifer Ishii , Jedd D Wolchok , Genevieve Boland , Nicolas Robine , Nasser K Altorki , Dan A Landau

Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer.

Clinical cancer research : an official journal of the American Association for Cancer Research

Avec: Heather A Parsons , Justin Rhoades , Sarah C Reed , Gregory Gydush , Priyanka Ram , Pedro Exman , Kan Xiong , Christopher C Lo , Tianyu Li , Mark Fleharty , Gregory J Kirkner , Denisse Rotem , Ofir Cohen , Fangyan Yu , Mariana Fitarelli-Kiehl , Ka Wai Leong , Melissa E Hughes , Shoshana M Rosenberg , Laura C Collins , Kathy D Miller , Brendan Blumenstiel , Lorenzo Trippa , Carrie Cibulskis , Donna S Neuberg , Matthew DeFelice , Samuel S Freeman , Niall J Lennon , Nikhil Wagle , Gavin Ha , Daniel G Stover , Atish D Choudhury , Gad Getz , Eric P Winer , Matthew Meyerson , Nancy U Lin , Ian Krop , J Christopher Love , G Mike Makrigiorgos , Ann H Partridge , Erica L Mayer , Todd R Golub , Viktor A Adalsteinsson

Circulating Cell-Free DNA as Biomarker of Taxane Resistance in Metastatic Castration-Resistant Prostate Cancer.

Cancers

Avec: Edoardo Francini , Fang-Shu Ou , Justin Rhoades , Eric G Wolfe , Edward P O'Connor , Gavin Ha , Gregory Gydush , Kaitlin M Kelleher , Rupal S Bhatt , Steven P Balk , Christopher J Sweeney , Viktor A Adalsteinsson , Mary-Ellen Taplin , Atish D Choudhury

FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA.

Nature communications

Avec: Yaping Liu , Sarah C Reed , Christopher Lo , Atish D Choudhury , Heather A Parsons , Daniel G Stover , Gavin Ha , Gregory Gydush , Justin Rhoades , Denisse Rotem , Samuel Freeman , David W Katz , Ravi Bandaru , Haizi Zheng , Hailu Fu , Viktor A Adalsteinsson , Manolis Kellis

Réseau de co-auteurs

Gregory Gydush 9 collaborations

Justin Rhoades 9 collaborations

Viktor A Adalsteinsson 9 collaborations

Gavin Ha 6 collaborations

Denisse Rotem 6 collaborations

Atish D Choudhury 5 collaborations

Heather A Parsons 5 collaborations

Sarah C Reed 4 collaborations

Daniel G Stover 4 collaborations

Todd R Golub 4 collaborations

Christopher Lo 3 collaborations

Ka Wai Leong 3 collaborations

Fangyan Yu 3 collaborations

Sarah Reed 3 collaborations

J Christopher Love 3 collaborations

Kan Xiong 3 collaborations

G Mike Makrigiorgos 3 collaborations

Yaping Liu 2 collaborations

Samuel Freeman 2 collaborations

Ravi Bandaru 2 collaborations

Haizi Zheng 2 collaborations

Hailu Fu 2 collaborations

Manolis Kellis 2 collaborations

Mark Fleharty 2 collaborations

Erica Nguyen 2 collaborations

Jin H Bae 2 collaborations

Timothy Blewett 2 collaborations

Douglas Shea 2 collaborations

Ruolin Liu 2 collaborations

Erica L Mayer 2 collaborations

David Katz 1 collaboration

Ioannis Ladas 1 collaboration

Jiang Li 1 collaboration

Kelan G Tantisira 1 collaboration

Gerassimos Mike Makrigiorgos 1 collaboration

Michael D White 1 collaboration

Robert H Klein 1 collaboration

Brian Shaw 1 collaboration

Albert Kim 1 collaboration

Megha Subramanian 1 collaboration

Joana L Mora 1 collaboration

Anita Giobbie-Hurder 1 collaboration

Deepika Nagabhushan 1 collaboration

Aarushi Jain 1 collaboration

Mohini Singh 1 collaboration

Benjamin M Kuter 1 collaboration

Naema Nayyar 1 collaboration

Mia S Bertalan 1 collaboration

Jackson H Stocking 1 collaboration

Samuel C Markson 1 collaboration

Matthew Lastrapes 1 collaboration

Christopher Alvarez-Breckenridge 1 collaboration

Daniel P Cahill 1 collaboration

Maura Mahar 1 collaboration

Alexander Kaplan 1 collaboration

Kevin Oh 1 collaboration

Ryan J Sullivan 1 collaboration

Elizabeth Gerstner 1 collaboration

Scott L Carter 1 collaboration

Priscilla K Brastianos 1 collaboration

Mélanie Pagès 1 collaboration

Madeleine Duran 1 collaboration

Robert Jones 1 collaboration

Sarah Becker 1 collaboration

Michaela Haller 1 collaboration

Claire E Sinai 1 collaboration

Liliana Goumnerova 1 collaboration

Keith L Ligon 1 collaboration

Karen D Wright 1 collaboration

Rameen Beroukhim 1 collaboration

Pratiti Bandopadhayay 1 collaboration

Sara M Tolaney 1 collaboration

Ian E Krop 1 collaboration

Eugenia Roberts 1 collaboration

Shervin Tabrizi 1 collaboration

Zhenyi An 1 collaboration

Sahil Patel 1 collaboration

Ju Cheng 1 collaboration

Sainetra Sridhar 1 collaboration

Mei Hong Liu 1 collaboration

Emilie Lassen 1 collaboration

Anne-Bine Skytte 1 collaboration

Marta Grońska-Pęski 1 collaboration

Jonathan E Shoag 1 collaboration

Gilad D Evrony 1 collaboration

Asaf Zviran 1 collaboration

Rafael C Schulman 1 collaboration

Minita Shah 1 collaboration

Steven T K Hill 1 collaboration

Sunil Deochand 1 collaboration

Cole C Khamnei 1 collaboration

Dillon Maloney 1 collaboration

Kristofer Patel 1 collaboration

Will Liao 1 collaboration

Adam J Widman 1 collaboration

Phillip Wong 1 collaboration

Margaret K Callahan 1 collaboration

Dennie Frederick 1 collaboration

Tatyana Sharova 1 collaboration

Benchun Miao 1 collaboration

Tommy Kim 1 collaboration

Kevin Y Huang 1 collaboration

Nathaniel D Omans 1 collaboration

Patrick O Bolan 1 collaboration

Andrew H Lipsky 1 collaboration

Chelston Ang 1 collaboration

Murtaza Malbari 1 collaboration

Catherine F Spinelli 1 collaboration

Selena Kazancioglu 1 collaboration

Alexi M Runnels 1 collaboration

Samantha Fennessey 1 collaboration

Christian Stolte 1 collaboration

Federico Gaiti 1 collaboration

Giorgio G Inghirami 1 collaboration

Viktor Adalsteinsson 1 collaboration

Brian Houck-Loomis 1 collaboration

Jennifer Ishii 1 collaboration

Jedd D Wolchok 1 collaboration

Genevieve Boland 1 collaboration

Nicolas Robine 1 collaboration

Nasser K Altorki 1 collaboration

Dan A Landau 1 collaboration

Priyanka Ram 1 collaboration

Pedro Exman 1 collaboration

Christopher C Lo 1 collaboration

Tianyu Li 1 collaboration

Gregory J Kirkner 1 collaboration

Ofir Cohen 1 collaboration

Mariana Fitarelli-Kiehl 1 collaboration

Melissa E Hughes 1 collaboration

Shoshana M Rosenberg 1 collaboration

Laura C Collins 1 collaboration

Kathy D Miller 1 collaboration

Brendan Blumenstiel 1 collaboration

Lorenzo Trippa 1 collaboration

Carrie Cibulskis 1 collaboration

Donna S Neuberg 1 collaboration

Matthew DeFelice 1 collaboration

Samuel S Freeman 1 collaboration

Niall J Lennon 1 collaboration

Nikhil Wagle 1 collaboration

Gad Getz 1 collaboration

Eric P Winer 1 collaboration

Matthew Meyerson 1 collaboration

Nancy U Lin 1 collaboration

Ian Krop 1 collaboration

Ann H Partridge 1 collaboration

Edoardo Francini 1 collaboration

Fang-Shu Ou 1 collaboration

Eric G Wolfe 1 collaboration

Edward P O'Connor 1 collaboration

Kaitlin M Kelleher 1 collaboration

Rupal S Bhatt 1 collaboration

Steven P Balk 1 collaboration

Christopher J Sweeney 1 collaboration

Mary-Ellen Taplin 1 collaboration

David W Katz 1 collaboration