Farnoush Banaei-Kashani

Affiliations

University of Colorado Denver, Denver, CO, USA.

Publications (15)

Large scale proteomic studies create novel privacy considerations.

Scientific reports

Avec: Andrew C Hill , Claire Guo , Elizabeth M Litkowski , Ani W Manichaikul , Bing Yu , Iain R Konigsberg , Betty A Gorbet , Leslie A Lange , Katherine A Pratte , Katerina J Kechris , Matthew DeCamp , Marilyn Coors , Victor E Ortega , Stephen S Rich , Jerome I Rotter , Robert E Gerzsten , Clary B Clish , Jeffrey L Curtis , Xiaowei Hu , Ma-En Obeidat , Melody Morris , Joseph Loureiro , Debby Ngo , Wanda K O'Neal , Deborah A Meyers , Eugene R Bleecker , Brian D Hobbs , Michael H Cho , Farnoush Banaei-Kashani , Russell P Bowler

Effective Subject Representation based on Multi-omics Disease Networks using Graph Embedding.

Proceedings. IEEE International Conference on Bioinformatics and Biomedicine

Avec: Sundous Hussein , Thao Vu , Leslie Lange , Russell P Bowler , Katerina J Kechris , Farnoush Banaei-Kashani

Multi-omics subtyping pipeline for chronic obstructive pulmonary disease.

PloS one

Avec: Lucas A Gillenwater , Shahab Helmi , Evan Stene , Katherine A Pratte , Yonghua Zhuang , Ronald P Schuyler , Leslie Lange , Peter J Castaldi , Craig P Hersh , Farnoush Banaei-Kashani , Russell P Bowler , Katerina J Kechris

Evaluation of Quantitative Decision-Making for Rhythm Management of Atrial Fibrillation Using Tabular Q-Learning.

Journal of the American Heart Association

Avec: Christopher D Barrett , Yuto Suzuki , Sundos Hussein , Lohit Garg , Alexis Tumolo , Amneet Sandhu , John J West , Matthew Zipse , Ryan Aleong , Paul Varosy , Wendy S Tzou , Farnoush Banaei-Kashani , Michael A Rosenberg

An Augmented High-Dimensional Graphical Lasso Method to Incorporate Prior Biological Knowledge for Global Network Learning.

Frontiers in genetics

Avec: Yonghua Zhuang , Fuyong Xing , Debashis Ghosh , Farnoush Banaei-Kashani , Russell P Bowler , Katerina Kechris

Proteomic Networks and Related Genetic Variants Associated with Smoking and Chronic Obstructive Pulmonary Disease.

medRxiv : the preprint server for health sciences

Avec: Iain R Konigsberg , Thao Vu , Weixuan Liu , Elizabeth M Litkowski , Katherine A Pratte , Luciana B Vargas , Niles Gilmore , Mohamed Abdel-Hafiz , Ani W Manichaikul , Michael H Cho , Craig P Hersh , Dawn L DeMeo , Farnoush Banaei-Kashani , Russell P Bowler , Leslie A Lange , Katerina J Kechris

Qualitative Evaluation of an Artificial Intelligence-Based Clinical Decision Support System to Guide Rhythm Management of Atrial Fibrillation: Survey Study.

JMIR formative research

Avec: John Stacy , Rachel Kim , Christopher Barrett , Balaviknesh Sekar , Steven Simon , Farnoush Banaei-Kashani , Michael A Rosenberg

NetSHy: network summarization via a hybrid approach leveraging topological properties.

Bioinformatics (Oxford, England)

Avec: Thao Vu , Elizabeth M Litkowski , Weixuan Liu , Katherine A Pratte , Leslie Lange , Russell P Bowler , Farnoush Banaei-Kashani , Katerina J Kechris

Deep learning on graphs for multi-omics classification of COPD.

PloS one

Avec: Yonghua Zhuang , Fuyong Xing , Debashis Ghosh , Brian D Hobbs , Craig P Hersh , Farnoush Banaei-Kashani , Russell P Bowler , Katerina Kechris

Aptardi predicts polyadenylation sites in sample-specific transcriptomes using high-throughput RNA sequencing and DNA sequence.

Nature communications

Avec: Ryan Lusk , Evan Stene , Farnoush Banaei-Kashani , Boris Tabakoff , Katerina Kechris , Laura M Saba

Assessment of a Mobile Health iPhone App for Semiautomated Self-management of Chronic Recurrent Medical Conditions Using an N-of-1 Trial Framework: Feasibility Pilot Study.

JMIR formative research

Avec: Archana Mande , Susan L Moore , Farnoush Banaei-Kashani , Benjamin Echalier , Sheana Bull , Michael A Rosenberg

Significant Subgraph Detection in Multi-omics Networks for Disease Pathway Identification.

Frontiers in big data

Avec: Mohamed Abdel-Hafiz , Mesbah Najafi , Shahab Helmi , Katherine A Pratte , Yonghua Zhuang , Weixuan Liu , Katerina J Kechris , Russell P Bowler , Leslie Lange , Farnoush Banaei-Kashani

ST-DeepGait: A Spatiotemporal Deep Learning Model for Human Gait Recognition.

Sensors (Basel, Switzerland)

Avec: Latisha Konz , Andrew Hill , Farnoush Banaei-Kashani

A Generalized Higher-order Correlation Analysis Framework for Multi-Omics Network Inference.

bioRxiv : the preprint server for biology

Avec: Weixuan Liu , Katherine A Pratte , Peter J Castaldi , Craig Hersh , Russell P Bowler , Farnoush Banaei-Kashani , Katerina J Kechris

Proteomic networks and related genetic variants associated with smoking and chronic obstructive pulmonary disease.

BMC genomics

Avec: Iain R Konigsberg , Thao Vu , Weixuan Liu , Elizabeth M Litkowski , Katherine A Pratte , Luciana B Vargas , Niles Gilmore , Mohamed Abdel-Hafiz , Ani Manichaikul , Michael H Cho , Craig P Hersh , Dawn L DeMeo , Farnoush Banaei-Kashani , Russell P Bowler , Leslie A Lange , Katerina J Kechris

Réseau de co-auteurs

Russell P Bowler 10 collaborations

Katerina J Kechris 8 collaborations

Katherine A Pratte 7 collaborations

Weixuan Liu 5 collaborations

Elizabeth M Litkowski 4 collaborations

Thao Vu 4 collaborations

Leslie Lange 4 collaborations

Yonghua Zhuang 4 collaborations

Craig P Hersh 4 collaborations

Iain R Konigsberg 3 collaborations

Leslie A Lange 3 collaborations

Michael H Cho 3 collaborations

Michael A Rosenberg 3 collaborations

Katerina Kechris 3 collaborations

Mohamed Abdel-Hafiz 3 collaborations

Ani W Manichaikul 2 collaborations

Brian D Hobbs 2 collaborations

Shahab Helmi 2 collaborations

Evan Stene 2 collaborations

Peter J Castaldi 2 collaborations

Fuyong Xing 2 collaborations

Debashis Ghosh 2 collaborations

Luciana B Vargas 2 collaborations

Niles Gilmore 2 collaborations

Dawn L DeMeo 2 collaborations

Andrew C Hill 1 collaboration

Claire Guo 1 collaboration

Bing Yu 1 collaboration

Betty A Gorbet 1 collaboration

Matthew DeCamp 1 collaboration

Marilyn Coors 1 collaboration

Victor E Ortega 1 collaboration

Stephen S Rich 1 collaboration

Jerome I Rotter 1 collaboration

Robert E Gerzsten 1 collaboration

Clary B Clish 1 collaboration

Jeffrey L Curtis 1 collaboration

Xiaowei Hu 1 collaboration

Ma-En Obeidat 1 collaboration

Melody Morris 1 collaboration

Joseph Loureiro 1 collaboration

Debby Ngo 1 collaboration

Wanda K O'Neal 1 collaboration

Deborah A Meyers 1 collaboration

Eugene R Bleecker 1 collaboration

Sundous Hussein 1 collaboration

Lucas A Gillenwater 1 collaboration

Ronald P Schuyler 1 collaboration

Christopher D Barrett 1 collaboration

Yuto Suzuki 1 collaboration

Sundos Hussein 1 collaboration

Lohit Garg 1 collaboration

Alexis Tumolo 1 collaboration

Amneet Sandhu 1 collaboration

John J West 1 collaboration

Matthew Zipse 1 collaboration

Ryan Aleong 1 collaboration

Paul Varosy 1 collaboration

Wendy S Tzou 1 collaboration

John Stacy 1 collaboration

Rachel Kim 1 collaboration

Christopher Barrett 1 collaboration

Balaviknesh Sekar 1 collaboration

Steven Simon 1 collaboration

Ryan Lusk 1 collaboration

Boris Tabakoff 1 collaboration

Laura M Saba 1 collaboration

Archana Mande 1 collaboration

Susan L Moore 1 collaboration

Benjamin Echalier 1 collaboration

Sheana Bull 1 collaboration

Mesbah Najafi 1 collaboration

Latisha Konz 1 collaboration

Andrew Hill 1 collaboration

Craig Hersh 1 collaboration

Ani Manichaikul 1 collaboration