F Lejzerowicz

Affiliations

Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, USA.

Publications (13)

Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors.

Nature communications

Avec: Julien Tap , Franck Lejzerowicz , Aurélie Cotillard , Matthieu Pichaud , Daniel McDonald , Se Jin Song , Rob Knight , Patrick Veiga , Muriel Derrien

Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods.

The Science of the total environment

Avec: J Pawlowski , K Bruce , K Panksep , F I Aguirre , S Amalfitano , L Apothéloz-Perret-Gentil , T Baussant , A Bouchez , L Carugati , K Cermakova , T Cordier , C Corinaldesi , F O Costa , R Danovaro , A Dell'Anno , S Duarte , U Eisendle , B J D Ferrari , F Frontalini , L Frühe , A Haegerbaeumer , V Kisand , A Krolicka , A Lanzén , F Leese , F Lejzerowicz , E Lyautey , I Maček , M Sagova-Marečková , J K Pearman , X Pochon , T Stoeck , R Vivien , A Weigand , S Fazi

Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments.

Scientific reports

Avec: Inès Barrenechea Angeles , Franck Lejzerowicz , Tristan Cordier , Janin Scheplitz , Michal Kucera , Daniel Ariztegui , Jan Pawlowski , Raphaël Morard

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.

mSystems

Avec: Qiyun Zhu , Shi Huang , Antonio Gonzalez , Imran McGrath , Daniel McDonald , Niina Haiminen , George Armstrong , Yoshiki Vázquez-Baeza , Julian Yu , Justin Kuczynski , Gregory D Sepich-Poore , Austin D Swafford , Promi Das , Justin P Shaffer , Franck Lejzerowicz , Pedro Belda-Ferre , Aki S Havulinna , Guillaume Méric , Teemu Niiranen , Leo Lahti , Veikko Salomaa , Ho-Cheol Kim , Mohit Jain , Michael Inouye , Jack A Gilbert , Rob Knight

SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.

BMC bioinformatics

Avec: Yoann Dufresne , Franck Lejzerowicz , Laure Apotheloz Perret-Gentil , Jan Pawlowski , Tristan Cordier

Scientific and budgetary trade-offs between morphological and molecular methods for deep-sea biodiversity assessment.

Integrated environmental assessment and management

Avec: Jennifer T Le , Lisa A Levin , Franck Lejzerowicz , Tristan Cordier , Andrew J Gooday , Jan Pawlowski

Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome.

mSystems

Avec: Bryn C Taylor , Franck Lejzerowicz , Marion Poirel , Justin P Shaffer , Lingjing Jiang , Alexander Aksenov , Nicole Litwin , Gregory Humphrey , Cameron Martino , Sandrine Miller-Montgomery , Pieter C Dorrestein , Patrick Veiga , Se Jin Song , Daniel McDonald , Muriel Derrien , Rob Knight

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment.

Science advances

Avec: Tristan Cordier , Inès Barrenechea Angeles , Nicolas Henry , Franck Lejzerowicz , Cédric Berney , Raphaël Morard , Angelika Brandt , Marie-Anne Cambon-Bonavita , Lionel Guidi , Fabien Lombard , Pedro Martinez Arbizu , Ramon Massana , Covadonga Orejas , Julie Poulain , Craig R Smith , Patrick Wincker , Sophie Arnaud-Haond , Andrew J Gooday , Colomban de Vargas , Jan Pawlowski

The molecular impact of life in an indoor environment.

Science advances

Avec: Alexander A Aksenov , Rodolfo A Salido , Alexey V Melnik , Caitriona Brennan , Asker Brejnrod , Andrés Mauricio Caraballo-Rodríguez , Julia M Gauglitz , Franck Lejzerowicz , Delphine K Farmer , Marina E Vance , Rob Knight , Pieter C Dorrestein

Climate change considerations are fundamental to management of deep-sea resource extraction.

Global change biology

Avec: Lisa A Levin , Chih-Lin Wei , Daniel C Dunn , Diva J Amon , Oliver S Ashford , William W L Cheung , Ana Colaço , Carlos Dominguez-Carrió , Elva G Escobar , Harriet R Harden-Davies , Jeffrey C Drazen , Khaira Ismail , Daniel O B Jones , David E Johnson , Jennifer T Le , Franck Lejzerowicz , Satoshi Mitarai , Telmo Morato , Sandor Mulsow , Paul V R Snelgrove , Andrew K Sweetman , Moriaki Yasuhara

A posteriori dietary patterns better explain variations of the gut microbiome than individual markers in the American Gut Project.

The American journal of clinical nutrition

Avec: Aurélie Cotillard , Agnès Cartier-Meheust , Nicole S Litwin , Soline Chaumont , Mathilde Saccareau , Franck Lejzerowicz , Julien Tap , Hana Koutnikova , Diana Gutierrez Lopez , Daniel McDonald , Se Jin Song , Rob Knight , Muriel Derrien , Patrick Veiga

Environmental RNA outperforms eDNA metabarcoding in assessing impact of marine pollution: A chromium-spiked mesocosm test.

Chemosphere

Avec: Mattia Greco , Franck Lejzerowicz , Emanuela Reo , Antonio Caruso , Antonella Maccotta , Rodolfo Coccioni , Jan Pawlowski , Fabrizio Frontalini

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.

Nature microbiology

Avec: Justin P Shaffer , Louis-Félix Nothias , Luke R Thompson , Jon G Sanders , Rodolfo A Salido , Sneha P Couvillion , Asker D Brejnrod , Franck Lejzerowicz , Niina Haiminen , Shi Huang , Holly L Lutz , Qiyun Zhu , Cameron Martino , James T Morton , Smruthi Karthikeyan , Mélissa Nothias-Esposito , Kai Dührkop , Sebastian Böcker , Hyun Woo Kim , Alexander A Aksenov , Wout Bittremieux , Jeremiah J Minich , Clarisse Marotz , MacKenzie M Bryant , Karenina Sanders , Tara Schwartz , Greg Humphrey , Yoshiki Vásquez-Baeza , Anupriya Tripathi , Laxmi Parida , Anna Paola Carrieri , Kristen L Beck , Promi Das , Antonio González , Daniel McDonald , Joshua Ladau , Søren M Karst , Mads Albertsen , Gail Ackermann , Jeff DeReus , Torsten Thomas , Daniel Petras , Ashley Shade , James Stegen , Se Jin Song , Thomas O Metz , Austin D Swafford , Pieter C Dorrestein , Janet K Jansson , Jack A Gilbert , Rob Knight , Auteur inconnu

Réseau de co-auteurs

Franck Lejzerowicz 12 collaborations

Rob Knight 6 collaborations

Daniel McDonald 5 collaborations

Jan Pawlowski 5 collaborations

Se Jin Song 4 collaborations

Tristan Cordier 4 collaborations

Patrick Veiga 3 collaborations

Muriel Derrien 3 collaborations

Justin P Shaffer 3 collaborations

Pieter C Dorrestein 3 collaborations

Julien Tap 2 collaborations

Aurélie Cotillard 2 collaborations

Inès Barrenechea Angeles 2 collaborations

Raphaël Morard 2 collaborations

Qiyun Zhu 2 collaborations

Shi Huang 2 collaborations

Niina Haiminen 2 collaborations

Austin D Swafford 2 collaborations

Promi Das 2 collaborations

Jack A Gilbert 2 collaborations

Jennifer T Le 2 collaborations

Lisa A Levin 2 collaborations

Andrew J Gooday 2 collaborations

Cameron Martino 2 collaborations

Alexander A Aksenov 2 collaborations

Rodolfo A Salido 2 collaborations

Matthieu Pichaud 1 collaboration

J Pawlowski 1 collaboration

K Bruce 1 collaboration

K Panksep 1 collaboration

F I Aguirre 1 collaboration

S Amalfitano 1 collaboration

L Apothéloz-Perret-Gentil 1 collaboration

T Baussant 1 collaboration

A Bouchez 1 collaboration

L Carugati 1 collaboration

K Cermakova 1 collaboration

T Cordier 1 collaboration

C Corinaldesi 1 collaboration

F O Costa 1 collaboration

R Danovaro 1 collaboration

A Dell'Anno 1 collaboration

S Duarte 1 collaboration

U Eisendle 1 collaboration

B J D Ferrari 1 collaboration

F Frontalini 1 collaboration

L Frühe 1 collaboration

A Haegerbaeumer 1 collaboration

V Kisand 1 collaboration

A Krolicka 1 collaboration

A Lanzén 1 collaboration

F Leese 1 collaboration

E Lyautey 1 collaboration

I Maček 1 collaboration

M Sagova-Marečková 1 collaboration

J K Pearman 1 collaboration

X Pochon 1 collaboration

T Stoeck 1 collaboration

R Vivien 1 collaboration

A Weigand 1 collaboration

S Fazi 1 collaboration

Janin Scheplitz 1 collaboration

Michal Kucera 1 collaboration

Daniel Ariztegui 1 collaboration

Antonio Gonzalez 1 collaboration

Imran McGrath 1 collaboration

George Armstrong 1 collaboration

Yoshiki Vázquez-Baeza 1 collaboration

Julian Yu 1 collaboration

Justin Kuczynski 1 collaboration

Gregory D Sepich-Poore 1 collaboration

Pedro Belda-Ferre 1 collaboration

Aki S Havulinna 1 collaboration

Guillaume Méric 1 collaboration

Teemu Niiranen 1 collaboration

Leo Lahti 1 collaboration

Veikko Salomaa 1 collaboration

Ho-Cheol Kim 1 collaboration

Mohit Jain 1 collaboration

Michael Inouye 1 collaboration

Yoann Dufresne 1 collaboration

Laure Apotheloz Perret-Gentil 1 collaboration

Bryn C Taylor 1 collaboration

Marion Poirel 1 collaboration

Lingjing Jiang 1 collaboration

Alexander Aksenov 1 collaboration

Nicole Litwin 1 collaboration

Gregory Humphrey 1 collaboration

Sandrine Miller-Montgomery 1 collaboration

Nicolas Henry 1 collaboration

Cédric Berney 1 collaboration

Angelika Brandt 1 collaboration

Marie-Anne Cambon-Bonavita 1 collaboration

Lionel Guidi 1 collaboration

Fabien Lombard 1 collaboration

Pedro Martinez Arbizu 1 collaboration

Ramon Massana 1 collaboration

Covadonga Orejas 1 collaboration

Julie Poulain 1 collaboration

Craig R Smith 1 collaboration

Patrick Wincker 1 collaboration

Sophie Arnaud-Haond 1 collaboration

Colomban de Vargas 1 collaboration

Alexey V Melnik 1 collaboration

Caitriona Brennan 1 collaboration

Asker Brejnrod 1 collaboration

Andrés Mauricio Caraballo-Rodríguez 1 collaboration

Julia M Gauglitz 1 collaboration

Delphine K Farmer 1 collaboration

Marina E Vance 1 collaboration

Chih-Lin Wei 1 collaboration

Daniel C Dunn 1 collaboration

Diva J Amon 1 collaboration

Oliver S Ashford 1 collaboration

William W L Cheung 1 collaboration

Ana Colaço 1 collaboration

Carlos Dominguez-Carrió 1 collaboration

Elva G Escobar 1 collaboration

Harriet R Harden-Davies 1 collaboration

Jeffrey C Drazen 1 collaboration

Khaira Ismail 1 collaboration

Daniel O B Jones 1 collaboration

David E Johnson 1 collaboration

Satoshi Mitarai 1 collaboration

Telmo Morato 1 collaboration

Sandor Mulsow 1 collaboration

Paul V R Snelgrove 1 collaboration

Andrew K Sweetman 1 collaboration

Moriaki Yasuhara 1 collaboration

Agnès Cartier-Meheust 1 collaboration

Nicole S Litwin 1 collaboration

Soline Chaumont 1 collaboration

Mathilde Saccareau 1 collaboration

Hana Koutnikova 1 collaboration

Diana Gutierrez Lopez 1 collaboration

Mattia Greco 1 collaboration

Emanuela Reo 1 collaboration

Antonio Caruso 1 collaboration

Antonella Maccotta 1 collaboration

Rodolfo Coccioni 1 collaboration

Fabrizio Frontalini 1 collaboration

Louis-Félix Nothias 1 collaboration

Luke R Thompson 1 collaboration

Jon G Sanders 1 collaboration

Sneha P Couvillion 1 collaboration

Asker D Brejnrod 1 collaboration

Holly L Lutz 1 collaboration

James T Morton 1 collaboration

Smruthi Karthikeyan 1 collaboration

Mélissa Nothias-Esposito 1 collaboration

Kai Dührkop 1 collaboration

Sebastian Böcker 1 collaboration

Hyun Woo Kim 1 collaboration

Wout Bittremieux 1 collaboration

Jeremiah J Minich 1 collaboration

Clarisse Marotz 1 collaboration

MacKenzie M Bryant 1 collaboration

Karenina Sanders 1 collaboration

Tara Schwartz 1 collaboration

Greg Humphrey 1 collaboration

Yoshiki Vásquez-Baeza 1 collaboration

Anupriya Tripathi 1 collaboration

Laxmi Parida 1 collaboration

Anna Paola Carrieri 1 collaboration

Kristen L Beck 1 collaboration

Antonio González 1 collaboration

Joshua Ladau 1 collaboration

Søren M Karst 1 collaboration

Mads Albertsen 1 collaboration

Gail Ackermann 1 collaboration

Jeff DeReus 1 collaboration

Torsten Thomas 1 collaboration

Daniel Petras 1 collaboration

Ashley Shade 1 collaboration

James Stegen 1 collaboration

Thomas O Metz 1 collaboration

Janet K Jansson 1 collaboration

None None 1 collaboration