Estibaliz Gómez-de-Mariscal

Affiliations

Bioengineering and Aerospace Engineering Department, Universidad Carlos III de Madrid, Leganés, 28911, Spain.
Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, 28007, Spain.

Publications (15)

Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images.

Scientific reports

Avec: Estibaliz Gómez-de-Mariscal , Martin Maška , Anna Kotrbová , Vendula Pospíchalová , Pavel Matula , Arrate Muñoz-Barrutia

The rise of data-driven microscopy powered by machine learning.

Journal of microscopy

Avec: Leonor Morgado , Estibaliz Gómez-de-Mariscal , Hannah S Heil , Ricardo Henriques

Gut Analysis Toolbox: Automating quantitative analysis of enteric neurons.

Journal of cell science

Avec: Luke Sorensen , Adam Humenick , Sabrina S B Poon , Myat Noe Han , Narges S Mahdavian , Matthew C Rowe , Ryan Hamnett , Estibaliz Gómez-de-Mariscal , Peter H Neckel , Ayame Saito , Keith Mutunduwe , Christie Glennan , Robert Haase , Rachel M McQuade , Jaime P P Foong , Simon J H Brookes , Julia A Kaltschmidt , Arrate Muñoz-Barrutia , Sebastian K King , Nicholas A Veldhuis , Simona E Carbone , Daniel P Poole , Pradeep Rajasekhar

Roadmap on Deep Learning for Microscopy.

ArXiv

Avec: Giovanni Volpe , Carolina Wählby , Lei Tian , Michael Hecht , Artur Yakimovich , Kristina Monakhova , Laura Waller , Ivo F Sbalzarini , Christopher A Metzler , Mingyang Xie , Kevin Zhang , Isaac C D Lenton , Halina Rubinsztein-Dunlop , Daniel Brunner , Bijie Bai , Aydogan Ozcan , Daniel Midtvedt , Hao Wang , Nataša Sladoje , Joakim Lindblad , Jason T Smith , Marien Ochoa , Margarida Barroso , Xavier Intes , Tong Qiu , Li-Yu Yu , Sixian You , Yongtao Liu , Maxim A Ziatdinov , Sergei V Kalinin , Arlo Sheridan , Uri Manor , Elias Nehme , Ofri Goldenberg , Yoav Shechtman , Henrik K Moberg , Christoph Langhammer , Barbora Špačková , Saga Helgadottir , Benjamin Midtvedt , Aykut Argun , Tobias Thalheim , Frank Cichos , Stefano Bo , Lars Hubatsch , Jesus Pineda , Carlo Manzo , Harshith Bachimanchi , Erik Selander , Antoni Homs-Corbera , Martin Fränzl , Kevin de Haan , Yair Rivenson , Zofia Korczak , Caroline Beck Adiels , Mite Mijalkov , Dániel Veréb , Yu-Wei Chang , Joana B Pereira , Damian Matuszewski , Gustaf Kylberg , Ida-Maria Sintorn , Juan C Caicedo , Beth A Cimini , Muyinatu A Lediju Bell , Bruno M Saraiva , Guillaume Jacquemet , Ricardo Henriques , Wei Ouyang , Trang Le , Estibaliz Gómez-de-Mariscal , Daniel Sage , Arrate Muñoz-Barrutia , Ebba Josefson Lindqvist , Johanna Bergman

MLL1 regulates cytokine-driven cell migration and metastasis.

Science advances

Avec: Praful R Nair , Ludmila Danilova , Estibaliz Gómez-de-Mariscal , Dongjoo Kim , Rong Fan , Arrate Muñoz-Barrutia , Elana J Fertig , Denis Wirtz

Harnessing artificial intelligence to reduce phototoxicity in live imaging.

Journal of cell science

Avec: Estibaliz Gómez-de-Mariscal , Mario Del Rosario , Joanna W Pylvänäinen , Guillaume Jacquemet , Ricardo Henriques

Small extracellular vesicles promote stiffness-mediated metastasis.

Cancer research communications

Avec: Alexandra Sneider , Ying Liu , Bartholomew Starich , Wenxuan Du , Praful R Nair , Carolyn Marar , Najwa Faqih , Gabrielle E Ciotti , Joo Ho Kim , Sejal Krishnan , Salma Ibrahim , Muna Igboko , Alexus Locke , Daniel M Lewis , Hanna Hong , Michelle N Karl , Raghav Vij , Gabriella C Russo , Estibaliz Gómez-de-Mariscal , Mehran Habibi , Arrate Muñoz-Barrutia , Luo Gu , T S Karin Eisinger-Mathason , Denis Wirtz

Small extracellular vesicles promote stiffness-mediated metastasis.

bioRxiv : the preprint server for biology

Avec: Alexandra Sneider , Ying Liu , Bartholomew Starich , Wenxuan Du , Carolyn Marar , Najwa Faqih , Gabrielle E Ciotti , Joo Ho Kim , Sejal Krishnan , Salma Ibrahim , Muna Igboko , Alexus Locke , Daniel M Lewis , Hanna Hong , Michelle Karl , Raghav Vij , Gabriella C Russo , Praful Nair , Estibaliz Gómez-de-Mariscal , Mehran Habibi , Arrate Muñoz-Barrutia , Luo Gu , T S Karin Eisinger-Mathason , Denis Wirtz

CellTracksColab is a platform that enables compilation, analysis, and exploration of cell tracking data.

PLoS biology

Avec: Estibaliz Gómez-de-Mariscal , Hanna Grobe , Joanna W Pylvänäinen , Laura Xénard , Ricardo Henriques , Jean-Yves Tinevez , Guillaume Jacquemet

DeepImageJ: A user-friendly environment to run deep learning models in ImageJ.

Nature methods

Avec: Estibaliz Gómez-de-Mariscal , Carlos García-López-de-Haro , Wei Ouyang , Laurène Donati , Emma Lundberg , Michael Unser , Arrate Muñoz-Barrutia , Daniel Sage

Use of the p-values as a size-dependent function to address practical differences when analyzing large datasets.

Scientific reports

Avec: Estibaliz Gómez-de-Mariscal , Vanesa Guerrero , Alexandra Sneider , Hasini Jayatilaka , Jude M Phillip , Denis Wirtz , Arrate Muñoz-Barrutia

DeepBacs for multi-task bacterial image analysis using open-source deep learning approaches.

Communications biology

Avec: Christoph Spahn , Estibaliz Gómez-de-Mariscal , Romain F Laine , Pedro M Pereira , Lucas von Chamier , Mia Conduit , Mariana G Pinho , Guillaume Jacquemet , Séamus Holden , Mike Heilemann , Ricardo Henriques

The Cell Tracking Challenge: 10 years of objective benchmarking.

Nature methods

Avec: Martin Maška , Vladimír Ulman , Pablo Delgado-Rodriguez , Estibaliz Gómez-de-Mariscal , Tereza Nečasová , Fidel A Guerrero Peña , Tsang Ing Ren , Elliot M Meyerowitz , Tim Scherr , Katharina Löffler , Ralf Mikut , Tianqi Guo , Yin Wang , Jan P Allebach , Rina Bao , Noor M Al-Shakarji , Gani Rahmon , Imad Eddine Toubal , Kannappan Palaniappan , Filip Lux , Petr Matula , Ko Sugawara , Klas E G Magnusson , Layton Aho , Andrew R Cohen , Assaf Arbelle , Tal Ben-Haim , Tammy Riklin Raviv , Fabian Isensee , Paul F Jäger , Klaus H Maier-Hein , Yanming Zhu , Cristina Ederra , Ainhoa Urbiola , Erik Meijering , Alexandre Cunha , Arrate Muñoz-Barrutia , Michal Kozubek , Carlos Ortiz-de-Solórzano

Live-cell imaging in the deep learning era.

Current opinion in cell biology

Avec: Joanna W Pylvänäinen , Estibaliz Gómez-de-Mariscal , Ricardo Henriques , Guillaume Jacquemet

This Microtubule Does Not Exist: Super-Resolution Microscopy Image Generation by a Diffusion Model.

Small methods

Avec: Alon Saguy , Tav Nahimov , Maia Lehrman , Estibaliz Gómez-de-Mariscal , Iván Hidalgo-Cenalmor , Onit Alalouf , Ashwin Balakrishnan , Mike Heilemann , Ricardo Henriques , Yoav Shechtman

Réseau de co-auteurs

Arrate Muñoz-Barrutia 9 collaborations

Ricardo Henriques 7 collaborations

Guillaume Jacquemet 5 collaborations

Denis Wirtz 4 collaborations

Joanna W Pylvänäinen 3 collaborations

Alexandra Sneider 3 collaborations

Martin Maška 2 collaborations

Yoav Shechtman 2 collaborations

Wei Ouyang 2 collaborations

Daniel Sage 2 collaborations

Praful R Nair 2 collaborations

Ying Liu 2 collaborations

Bartholomew Starich 2 collaborations

Wenxuan Du 2 collaborations

Carolyn Marar 2 collaborations

Najwa Faqih 2 collaborations

Gabrielle E Ciotti 2 collaborations

Joo Ho Kim 2 collaborations

Sejal Krishnan 2 collaborations

Salma Ibrahim 2 collaborations

Muna Igboko 2 collaborations

Alexus Locke 2 collaborations

Daniel M Lewis 2 collaborations

Hanna Hong 2 collaborations

Raghav Vij 2 collaborations

Gabriella C Russo 2 collaborations

Mehran Habibi 2 collaborations

Luo Gu 2 collaborations

T S Karin Eisinger-Mathason 2 collaborations

Mike Heilemann 2 collaborations

Anna Kotrbová 1 collaboration

Vendula Pospíchalová 1 collaboration

Pavel Matula 1 collaboration

Leonor Morgado 1 collaboration

Hannah S Heil 1 collaboration

Luke Sorensen 1 collaboration

Adam Humenick 1 collaboration

Sabrina S B Poon 1 collaboration

Myat Noe Han 1 collaboration

Narges S Mahdavian 1 collaboration

Matthew C Rowe 1 collaboration

Ryan Hamnett 1 collaboration

Peter H Neckel 1 collaboration

Ayame Saito 1 collaboration

Keith Mutunduwe 1 collaboration

Christie Glennan 1 collaboration

Robert Haase 1 collaboration

Rachel M McQuade 1 collaboration

Jaime P P Foong 1 collaboration

Simon J H Brookes 1 collaboration

Julia A Kaltschmidt 1 collaboration

Sebastian K King 1 collaboration

Nicholas A Veldhuis 1 collaboration

Simona E Carbone 1 collaboration

Daniel P Poole 1 collaboration

Pradeep Rajasekhar 1 collaboration

Giovanni Volpe 1 collaboration

Carolina Wählby 1 collaboration

Lei Tian 1 collaboration

Michael Hecht 1 collaboration

Artur Yakimovich 1 collaboration

Kristina Monakhova 1 collaboration

Laura Waller 1 collaboration

Ivo F Sbalzarini 1 collaboration

Christopher A Metzler 1 collaboration

Mingyang Xie 1 collaboration

Kevin Zhang 1 collaboration

Isaac C D Lenton 1 collaboration

Halina Rubinsztein-Dunlop 1 collaboration

Daniel Brunner 1 collaboration

Bijie Bai 1 collaboration

Aydogan Ozcan 1 collaboration

Daniel Midtvedt 1 collaboration

Hao Wang 1 collaboration

Nataša Sladoje 1 collaboration

Joakim Lindblad 1 collaboration

Jason T Smith 1 collaboration

Marien Ochoa 1 collaboration

Margarida Barroso 1 collaboration

Xavier Intes 1 collaboration

Tong Qiu 1 collaboration

Li-Yu Yu 1 collaboration

Sixian You 1 collaboration

Yongtao Liu 1 collaboration

Maxim A Ziatdinov 1 collaboration

Sergei V Kalinin 1 collaboration

Arlo Sheridan 1 collaboration

Uri Manor 1 collaboration

Elias Nehme 1 collaboration

Ofri Goldenberg 1 collaboration

Henrik K Moberg 1 collaboration

Christoph Langhammer 1 collaboration

Barbora Špačková 1 collaboration

Saga Helgadottir 1 collaboration

Benjamin Midtvedt 1 collaboration

Aykut Argun 1 collaboration

Tobias Thalheim 1 collaboration

Frank Cichos 1 collaboration

Stefano Bo 1 collaboration

Lars Hubatsch 1 collaboration

Jesus Pineda 1 collaboration

Carlo Manzo 1 collaboration

Harshith Bachimanchi 1 collaboration

Erik Selander 1 collaboration

Antoni Homs-Corbera 1 collaboration

Martin Fränzl 1 collaboration

Kevin de Haan 1 collaboration

Yair Rivenson 1 collaboration

Zofia Korczak 1 collaboration

Caroline Beck Adiels 1 collaboration

Mite Mijalkov 1 collaboration

Dániel Veréb 1 collaboration

Yu-Wei Chang 1 collaboration

Joana B Pereira 1 collaboration

Damian Matuszewski 1 collaboration

Gustaf Kylberg 1 collaboration

Ida-Maria Sintorn 1 collaboration

Juan C Caicedo 1 collaboration

Beth A Cimini 1 collaboration

Muyinatu A Lediju Bell 1 collaboration

Bruno M Saraiva 1 collaboration

Trang Le 1 collaboration

Ebba Josefson Lindqvist 1 collaboration

Johanna Bergman 1 collaboration

Ludmila Danilova 1 collaboration

Dongjoo Kim 1 collaboration

Rong Fan 1 collaboration

Elana J Fertig 1 collaboration

Mario Del Rosario 1 collaboration

Michelle N Karl 1 collaboration

Michelle Karl 1 collaboration

Praful Nair 1 collaboration

Hanna Grobe 1 collaboration

Laura Xénard 1 collaboration

Jean-Yves Tinevez 1 collaboration

Carlos García-López-de-Haro 1 collaboration

Laurène Donati 1 collaboration

Emma Lundberg 1 collaboration

Michael Unser 1 collaboration

Vanesa Guerrero 1 collaboration

Hasini Jayatilaka 1 collaboration

Jude M Phillip 1 collaboration

Christoph Spahn 1 collaboration

Romain F Laine 1 collaboration

Pedro M Pereira 1 collaboration

Lucas von Chamier 1 collaboration

Mia Conduit 1 collaboration

Mariana G Pinho 1 collaboration

Séamus Holden 1 collaboration

Vladimír Ulman 1 collaboration

Pablo Delgado-Rodriguez 1 collaboration

Tereza Nečasová 1 collaboration

Fidel A Guerrero Peña 1 collaboration

Tsang Ing Ren 1 collaboration

Elliot M Meyerowitz 1 collaboration

Tim Scherr 1 collaboration

Katharina Löffler 1 collaboration

Ralf Mikut 1 collaboration

Tianqi Guo 1 collaboration

Yin Wang 1 collaboration

Jan P Allebach 1 collaboration

Rina Bao 1 collaboration

Noor M Al-Shakarji 1 collaboration

Gani Rahmon 1 collaboration

Imad Eddine Toubal 1 collaboration

Kannappan Palaniappan 1 collaboration

Filip Lux 1 collaboration

Petr Matula 1 collaboration

Ko Sugawara 1 collaboration

Klas E G Magnusson 1 collaboration

Layton Aho 1 collaboration

Andrew R Cohen 1 collaboration

Assaf Arbelle 1 collaboration

Tal Ben-Haim 1 collaboration

Tammy Riklin Raviv 1 collaboration

Fabian Isensee 1 collaboration

Paul F Jäger 1 collaboration

Klaus H Maier-Hein 1 collaboration

Yanming Zhu 1 collaboration

Cristina Ederra 1 collaboration

Ainhoa Urbiola 1 collaboration

Erik Meijering 1 collaboration

Alexandre Cunha 1 collaboration

Michal Kozubek 1 collaboration

Carlos Ortiz-de-Solórzano 1 collaboration

Alon Saguy 1 collaboration

Tav Nahimov 1 collaboration

Maia Lehrman 1 collaboration

Iván Hidalgo-Cenalmor 1 collaboration

Onit Alalouf 1 collaboration

Ashwin Balakrishnan 1 collaboration