Dhakshanamurthy Thirumalai

Affiliations

Department of Chemistry, Thiruvalluvar University, Vellore-632 115, Tamil Nadu, India.

Publications (46)

Fragile-to-strong crossover, growing length scales, and dynamic heterogeneity in Wigner glasses.

Physical review. E

Avec: Hyun Woo Cho , Mauro L Mugnai , T R Kirkpatrick , D Thirumalai

Processivity and Velocity for Motors Stepping on Periodic Tracks.

Biophysical journal

Avec: Mauro L Mugnai , Matthew A Caporizzo , Yale E Goldman , D Thirumalai

Conformational heterogeneity in human interphase chromosome organization reconciles the FISH and Hi-C paradox.

Nature communications

Avec: Guang Shi , D Thirumalai

Universal Nature of Collapsibility in the Context of Protein Folding and Evolution.

Trends in biochemical sciences

Avec: D Thirumalai , Himadri S Samanta , Hiranmay Maity , Govardhan Reddy

Self-generated persistent random forces drive phase separation in growing tumors.

The Journal of chemical physics

Avec: Sumit Sinha , D Thirumalai

Step-Wise Hydration of Magnesium by Four Water Molecules Precedes Phosphate Release in a Myosin Motor.

The journal of physical chemistry. B

Avec: Mauro Lorenzo Mugnai , D Thirumalai

Iterative annealing mechanism explains the functions of the GroEL and RNA chaperones.

Protein science : a publication of the Protein Society

Avec: D Thirumalai , George H Lorimer , Changbong Hyeon

Mechanical heterogeneity along single cell-cell junctions is driven by lateral clustering of cadherins during vertebrate axis elongation.

eLife

Avec: Robert J Huebner , Abdul Naseer Malmi-Kakkada , Sena Sarıkaya , Shinuo Weng , D Thirumalai , John B Wallingford

Energy Landscape of Ubiquitin Is Weakly Multidimensional.

The journal of physical chemistry. B

Avec: Balaka Mondal , D Thirumalai , Govardhan Reddy

Information flow, gating, and energetics in dimeric molecular motors.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Ryota Takaki , Mauro L Mugnai , D Thirumalai

Chromatin dynamics controls epigenetic domain formation.

Biophysical journal

Avec: Marina Katava , Guang Shi , D Thirumalai

Expert Consensus on the Characteristics of Patients with Epstein-Barr Virus-Positive Post-Transplant Lymphoproliferative Disease (EBV

Advances in therapy

Avec: Sridhar Chaganti , Arie Barlev , Sophie Caillard , Sylvain Choquet , Kate Cwynarski , Anke Friedetzky , Eva González-Barca , Natalia Sadetsky , Stefan Schneeberger , Dhanalakshmi Thirumalai , Pier L Zinzani , Ralf U Trappe

TMAO Destabilizes RNA Secondary Structure via Direct Hydrogen Bond Interactions.

The journal of physical chemistry. B

Avec: Samuel S Cho , Adam T Green , Changbong Hyeon , D Thirumalai

Allosteric communication between ACE2 active site and binding interface with SARS-CoV-2.

The Journal of chemical physics

Avec: Mauro L Mugnai , D Thirumalai

A maximum-entropy model to predict 3D structural ensembles of chromatin from pairwise distances with applications to interphase chromosomes and structural variants.

Nature communications

Avec: Guang Shi , D Thirumalai

Salt-Dependent Self-Association of Trinucleotide Repeat RNA Sequences.

The journal of physical chemistry letters

Avec: Hiranmay Maity , Hung T Nguyen , Naoto Hori , D Thirumalai

Myosin V executes steps of variable length via structurally constrained diffusion.

eLife

Avec: David Hathcock , Riina Tehver , Michael Hinczewski , D Thirumalai

Inflammation in myocardial injury- Stem cells as potential immunomodulators for myocardial regeneration and restoration.

Life sciences

Avec: Sajini Vadivel , Preethi Vincent , Saravanan Sekaran , Senthil Visaga Ambi , Shibi Muralidar , Vimalraj Selvaraj , Balamurugan Palaniappan , Diraviyam Thirumalai

Donor Stabilized Diatomic Gr.14 E

The journal of physical chemistry. A

Avec: Totan Mondal , Sayan Dutta , Sriman De , D Thirumalai , Debasis Koley

Temperature and Guanidine Hydrochloride Effects on the Folding Thermodynamics of WW Domain and Variants.

The journal of physical chemistry. B

Avec: Meng Qin , Natalia Denesyuk , Zhenxing Liu , Wei Wang , D Thirumalai

Reagentless Amperometric Pyruvate Biosensor Based on a Prussian Blue- and Enzyme Nanoparticle-Modified Screen-Printed Carbon Electrode.

ACS omega

Avec: Dinakaran Thirumalai , Seonghye Kim , Suhkmann Kim , Seung-Cheol Chang

Low Force Unfolding of a Single-Domain Protein by Parallel Pathways.

The journal of physical chemistry. B

Avec: Pavel I Zhuravlev , Michael Hinczewski , D Thirumalai

Chemical communications (Cambridge, England)

Avec: Dinakaran Thirumalai , Jun-Uk Lee , Hyojeong Choi , Minjeong Kim , Jaewon Lee , Suhkmann Kim , Bo-Sung Shin , Seung-Cheol Chang

Sequence Determines the Switch in the Fibril Forming Regions in the Low-Complexity FUS Protein and Its Variants.

The journal of physical chemistry letters

Avec: Abhinaw Kumar , Debayan Chakraborty , Mauro Lorenzo Mugnai , John E Straub , D Thirumalai

Multiscale Coarse-Grained Model for the Stepping of Molecular Motors with Application to Kinesin.

Journal of chemical theory and computation

Avec: Yonathan Goldtzvik , D Thirumalai

Surface grafted silica adsorbent for efficient removal of Hg

Environmental research

Avec: Madhappan Santhamoorthy , Kokila Thirupathi , Dinakaran Thirumalai , S Aldawood , Cheong-Cheol Kim

Free volume theory explains the unusual behavior of viscosity in a non-confluent tissue during morphogenesis.

eLife

Avec: Rajsekhar Das , Sumit Sinha , Xin Li , T R Kirkpatrick , D Thirumalai

Treatment Patterns and Unmet Need for Patients with Progressive Multiple Sclerosis in the United States: Survey Results from 2016 to 2021.

Neurology and therapy

Avec: Crystal Watson , Dhanalakshmi Thirumalai , Arie Barlev , Eddie Jones , Sasha Bogdanovich , Kiren Kresa-Reahl

Molecular mechanisms of steric pressure generation and membrane remodeling by disordered proteins.

Biophysical journal

Avec: Justin R Houser , Hyun Woo Cho , Carl C Hayden , Noel X Yang , Liping Wang , Eileen M Lafer , Dave Thirumalai , Jeanne C Stachowiak

Cooperativity and Folding Kinetics in a Multidomain Protein with Interwoven Chain Topology.

ACS central science

Avec: Zhenxing Liu , D Thirumalai

Moderate activity of RNA chaperone maximizes the yield of self-spliced pre-RNA in vivo.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Yonghyun Song , D Thirumalai , Changbong Hyeon

Structural changes in chromosomes driven by multiple condensin motors during mitosis.

Cell reports

Avec: Atreya Dey , Guang Shi , Ryota Takaki , D Thirumalai

Observe without disturbing: tracer particles sense local stresses in cell collectives without affecting the cancer cell dynamics.

Soft matter

Avec: Sumit Sinha , Himadri Samanta , D Thirumalai

The Folding of Germ Granule mRNAs Controls Intermolecular Base Pairing in Germ Granules and Maintains Normal Fly Development.

bioRxiv : the preprint server for biology

Avec: Siran Tian , Hung Nguyen , Ziqing Ye , Silvi Rouskin , D Thirumalai , Tatjana Trcek

Dual-channel fluorescent sensor for rapid Cu

Heliyon

Avec: Srinivasan Parthiban Ragavi , Dhakshanamurthy Thirumalai , Indira Viswambaran Asharani , Vidya Radhakrishnan , Peter Jerome

Water-Mediated Interactions Determine Helix Formation of Peptides in Open Nanotubes.

The journal of physical chemistry. B

Avec: Dylan Suvlu , D Thirumalai , Jayendran C Rasaiah

Role of Long-range Allosteric Communication in Determining the Stability and Disassembly of SARS-COV-2 in Complex with ACE2.

bioRxiv : the preprint server for biology

Avec: Mauro L Mugnai , Clark Templeton , Ron Elber , D Thirumalai

Asymmetry in histone rotation in forced unwrapping and force quench rewrapping in a nucleosome.

Nucleic acids research

Avec: Govardhan Reddy , D Thirumalai

Ion Condensation onto Ribozyme Is Site Specific and Fold Dependent.

Biophysical journal

Avec: Naoto Hori , Natalia A Denesyuk , D Thirumalai

How kinesin waits for ATP affects the nucleotide and load dependence of the stepping kinetics.

Proceedings of the National Academy of Sciences of the United States of America

Avec: Ryota Takaki , Mauro L Mugnai , Yonathan Goldtzvik , D Thirumalai

Correction: Spatially heterogeneous dynamics of cells in a growing tumor spheroid: comparison between theory and experiments.

Soft matter

Avec: Sumit Sinha , Abdul N Malmi-Kakkada , Xin Li , Himadri S Samanta , D Thirumalai

Polymer-dispersed reduced graphene oxide nanosheets and Prussian blue modified biosensor for amperometric detection of sarcosine.

Analytica chimica acta

Avec: Thenmozhi Rajarathinam , Minho Kwon , Dinakaran Thirumalai , Seonghye Kim , Seulah Lee , Jang-Hee Yoon , Hyun-Jong Paik , Suhkmann Kim , Jaewon Lee , Hong Koo Ha , Seung-Cheol Chang

Anti-Inflammatory Effect of IKK-Activated GSK-3β Inhibitory Peptide Prevented Nigrostriatal Neurodegeneration in the Rodent Model of Parkinson's Disease.

International journal of molecular sciences

Avec: Seulah Lee , Dong Geun Hong , Seonguk Yang , Jaehoon Kim , Minwoo Baek , Seoyeong Kim , Dinakaran Thirumalai , Hae Young Chung , Seung-Cheol Chang , Jaewon Lee

Condensates in RNA repeat sequences are heterogeneously organized and exhibit reptation dynamics.

Nature chemistry

Avec: Hung T Nguyen , Naoto Hori , D Thirumalai

Emergence of cellular nematic order is a conserved feature of gastrulation in animal embryos.

ArXiv

Avec: Xin Li , Robert J Huebner , Margot L K Williams , Jessica Sawyer , Mark Peifer , John B Wallingford , D Thirumalai

Emergence of cellular nematic order is a conserved feature of gastrulation in animal embryos.

bioRxiv : the preprint server for biology

Avec: Xin Li , Robert J Huebner , Margot L K Williams , Jessica Sawyer , Mark Peifer , John B Wallingford , D Thirumalai

Réseau de co-auteurs

D Thirumalai 36 collaborations

Mauro L Mugnai 6 collaborations

Dinakaran Thirumalai 5 collaborations

Guang Shi 4 collaborations

Sumit Sinha 4 collaborations

Seung-Cheol Chang 4 collaborations

Xin Li 4 collaborations

Govardhan Reddy 3 collaborations

Changbong Hyeon 3 collaborations

Robert J Huebner 3 collaborations

John B Wallingford 3 collaborations

Ryota Takaki 3 collaborations

Naoto Hori 3 collaborations

Suhkmann Kim 3 collaborations

Jaewon Lee 3 collaborations

Hyun Woo Cho 2 collaborations

T R Kirkpatrick 2 collaborations

Himadri S Samanta 2 collaborations

Hiranmay Maity 2 collaborations

Mauro Lorenzo Mugnai 2 collaborations

Arie Barlev 2 collaborations

Dhanalakshmi Thirumalai 2 collaborations

Hung T Nguyen 2 collaborations

Michael Hinczewski 2 collaborations

Zhenxing Liu 2 collaborations

Seonghye Kim 2 collaborations

Yonathan Goldtzvik 2 collaborations

Seulah Lee 2 collaborations

Margot L K Williams 2 collaborations

Jessica Sawyer 2 collaborations

Mark Peifer 2 collaborations

Matthew A Caporizzo 1 collaboration

Yale E Goldman 1 collaboration

George H Lorimer 1 collaboration

Abdul Naseer Malmi-Kakkada 1 collaboration

Sena Sarıkaya 1 collaboration

Shinuo Weng 1 collaboration

Balaka Mondal 1 collaboration

Marina Katava 1 collaboration

Sridhar Chaganti 1 collaboration

Sophie Caillard 1 collaboration

Sylvain Choquet 1 collaboration

Kate Cwynarski 1 collaboration

Anke Friedetzky 1 collaboration

Eva González-Barca 1 collaboration

Natalia Sadetsky 1 collaboration

Stefan Schneeberger 1 collaboration

Pier L Zinzani 1 collaboration

Ralf U Trappe 1 collaboration

Samuel S Cho 1 collaboration

Adam T Green 1 collaboration

David Hathcock 1 collaboration

Riina Tehver 1 collaboration

Sajini Vadivel 1 collaboration

Preethi Vincent 1 collaboration

Saravanan Sekaran 1 collaboration

Senthil Visaga Ambi 1 collaboration

Shibi Muralidar 1 collaboration

Vimalraj Selvaraj 1 collaboration

Balamurugan Palaniappan 1 collaboration

Diraviyam Thirumalai 1 collaboration

Totan Mondal 1 collaboration

Sayan Dutta 1 collaboration

Sriman De 1 collaboration

Debasis Koley 1 collaboration

Meng Qin 1 collaboration

Natalia Denesyuk 1 collaboration

Wei Wang 1 collaboration

Pavel I Zhuravlev 1 collaboration

Jun-Uk Lee 1 collaboration

Hyojeong Choi 1 collaboration

Minjeong Kim 1 collaboration

Bo-Sung Shin 1 collaboration

Abhinaw Kumar 1 collaboration

Debayan Chakraborty 1 collaboration

John E Straub 1 collaboration

Madhappan Santhamoorthy 1 collaboration

Kokila Thirupathi 1 collaboration

S Aldawood 1 collaboration

Cheong-Cheol Kim 1 collaboration

Rajsekhar Das 1 collaboration

Crystal Watson 1 collaboration

Eddie Jones 1 collaboration

Sasha Bogdanovich 1 collaboration

Kiren Kresa-Reahl 1 collaboration

Justin R Houser 1 collaboration

Carl C Hayden 1 collaboration

Noel X Yang 1 collaboration

Liping Wang 1 collaboration

Eileen M Lafer 1 collaboration

Dave Thirumalai 1 collaboration

Jeanne C Stachowiak 1 collaboration

Yonghyun Song 1 collaboration

Atreya Dey 1 collaboration

Himadri Samanta 1 collaboration

Siran Tian 1 collaboration

Hung Nguyen 1 collaboration

Ziqing Ye 1 collaboration

Silvi Rouskin 1 collaboration

Tatjana Trcek 1 collaboration

Srinivasan Parthiban Ragavi 1 collaboration

Indira Viswambaran Asharani 1 collaboration

Vidya Radhakrishnan 1 collaboration

Peter Jerome 1 collaboration

Dylan Suvlu 1 collaboration

Jayendran C Rasaiah 1 collaboration

Clark Templeton 1 collaboration

Ron Elber 1 collaboration

Natalia A Denesyuk 1 collaboration

Abdul N Malmi-Kakkada 1 collaboration

Thenmozhi Rajarathinam 1 collaboration

Minho Kwon 1 collaboration

Jang-Hee Yoon 1 collaboration

Hyun-Jong Paik 1 collaboration

Hong Koo Ha 1 collaboration

Dong Geun Hong 1 collaboration

Seonguk Yang 1 collaboration

Jaehoon Kim 1 collaboration

Minwoo Baek 1 collaboration

Seoyeong Kim 1 collaboration

Hae Young Chung 1 collaboration