Daria A Gaykalova

Affiliations

Department of Oncology, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA; Convergence Institute, Sidney Kimmel Comprehensive Cancer Center, Johns Hopkins University, Baltimore, MD, USA; Institute for Genome Sciences, University of Maryland Medical Center, Baltimore, MD, USA; Department of Otorhinolaryngology-Head and Neck Surgery, University of Maryland Medical Center, Baltimore, MD, USA; Marlene & Stewart Greenebaum Comprehensive Cancer Center, University of Maryland Medical Center, Baltimore, MD, USA.

Publications (20)

The use of machine learning to discover regulatory networks controlling biological systems.

Molecular cell

Avec: Rossin Erbe , Jessica Gore , Kelly Gemmill , Daria A Gaykalova , Elana J Fertig

Expression of Programmed Cell Death Ligand 1 and Associated Lymphocyte Infiltration in Olfactory Neuroblastoma.

World neurosurgery

Avec: Nyall R London , Lisa M Rooper , Justin A Bishop , Haiying Xu , Lydia J Bernhardt , Masaru Ishii , Christine L Hann , Janis M Taube , Evgeny Izumchenko , Daria A Gaykalova , Gary L Gallia

Publisher Correction: Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.

Nature communications

Avec: Mizuo Ando , Yuki Saito , Guorong Xu , Nam Q Bui , Kate Medetgul-Ernar , Minya Pu , Kathleen Fisch , Shuling Ren , Akihiro Sakai , Takahito Fukusumi , Chao Liu , Sunny Haft , John Pang , Adam Mark , Daria A Gaykalova , Theresa Guo , Alexander V Favorov , Srinivasan Yegnasubramanian , Elana J Fertig , Patrick Ha , Pablo Tamayo , Tatsuya Yamasoba , Trey Ideker , Karen Messer , Joseph A Califano

Correction: Novel Insight into Mutational Landscape of Head and Neck Squamous Cell Carcinoma.

PloS one

Avec: Daria A Gaykalova , Elizabeth Mambo , Ashish Choudhary , Jeffery Houghton , Kalyan Buddavarapu , Tiffany Sanford , Will Darden , Alex Adai , Andrew Hadd , Gary Latham , Ludmila V Danilova , Justin Bishop , Ryan J Li , William H Westra , Patrick Hennessey , Wayne M Koch , Michael F Ochs , Joseph A Califano , Wenyue Sun

Simultaneously targeting ErbB family kinases and PI3K in HPV-positive head and neck squamous cell carcinoma.

Oral oncology

Avec: Zejia Yang , Jipei Liao , Lisa Schumaker , Brandon Carter-Cooper , Rena G Lapidus , Xiaoxuan Fan , Daria A Gaykalova , Ranee Mehra , Kevin J Cullen , Hancai Dan

HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers.

Oncogene

Avec: Shuling Ren , Daria A Gaykalova , Theresa Guo , Alexander V Favorov , Elana J Fertig , Pablo Tamayo , Juan Luis Callejas-Valera , Mike Allevato , Mara Gilardi , Jessica Santos , Takahito Fukusumi , Akihiro Sakai , Mizuo Ando , Sayed Sadat , Chao Liu , Guorong Xu , Kathleen M Fisch , Zhiyong Wang , Alfredo A Molinolo , J Silvio Gutkind , Trey Ideker , Wayne M Koch , Joseph A Califano

Correction: Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines.

British journal of cancer

Avec: Luciane T Kagohara , Fernando Zamuner , Emily F Davis-Marcisak , Gaurav Sharma , Michael Considine , Jawara Allen , Srinivasan Yegnasubramanian , Daria A Gaykalova , Elana J Fertig

Connecting the dots: investigating the link between environmental, genetic, and epigenetic influences in metabolomic alterations in oral squamous cell carcinoma.

Journal of experimental & clinical cancer research : CR

Avec: Ishita Gupta , Fariba Badrzadeh , Yuri Tsentalovich , Daria A Gaykalova

Identification of CT-based non-invasive radiomic biomarkers for overall survival prediction in oral cavity squamous cell carcinoma.

Scientific reports

Avec: Xiao Ling , Gregory S Alexander , Jason Molitoris , Jinhyuk Choi , Lisa Schumaker , Ranee Mehra , Daria A Gaykalova , Lei Ren

Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.

Nature communications

Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines.

British journal of cancer

Avec: Luciane T Kagohara , Fernando Zamuner , Emily F Davis-Marcisak , Gaurav Sharma , Michael Considine , Jawara Allen , Srinivasan Yegnasubramanian , Daria A Gaykalova , Elana J Fertig

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets.

Nucleic acids research

Avec: Rossin Erbe , Michael D Kessler , Alexander V Favorov , Hariharan Easwaran , Daria A Gaykalova , Elana J Fertig

Entinostat Decreases Immune Suppression to Promote Antitumor Responses in a HER2+ Breast Tumor Microenvironment.

Cancer immunology research

Avec: Dimitrios N Sidiropoulos , Christine I Rafie , Julie K Jang , Sofi Castanon , Aaron G Baugh , Edgar Gonzalez , Brian J Christmas , Valerie H Narumi , Emily F Davis-Marcisak , Gaurav Sharma , Emma Bigelow , Ajay Vaghasia , Anuj Gupta , Alyza Skaist , Michael Considine , Sarah J Wheelan , Sathish Kumar Ganesan , Min Yu , Srinivasan Yegnasubramanian , Vered Stearns , Roisin M Connolly , Daria A Gaykalova , Luciane T Kagohara , Elizabeth M Jaffee , Elana J Fertig , Evanthia T Roussos Torres

Epigenetic Regulations of Perineural Invasion in Head and Neck Squamous Cell Carcinoma.

Frontiers in genetics

Avec: Pavel Hurník , Zuzana Chyra , Tereza Ševčíková , Jan Štembírek , Kateřina Smešný Trtková , Daria A Gaykalova , Marcela Buchtová , Eva Hrubá

Differentially Methylated Super-Enhancers Regulate Target Gene Expression in Human Cancer.

Scientific reports

Avec: Emily L Flam , Ludmila Danilova , Dylan Z Kelley , Elena Stavrovskaya , Theresa Guo , Michael Considine , Jiang Qian , Joseph A Califano , Alexander Favorov , Elana J Fertig , Daria A Gaykalova

Extracellular Vesicles Released by Tumor Endothelial Cells Spread Immunosuppressive and Transforming Signals Through Various Recipient Cells.

Frontiers in cell and developmental biology

Avec: Tatiana Lopatina , Enrica Favaro , Ludmila Danilova , Elana J Fertig , Alexander V Favorov , Luciane T Kagohara , Tiziana Martone , Benedetta Bussolati , Renato Romagnoli , Roberto Albera , Giancarlo Pecorari , Maria Felice Brizzi , Giovanni Camussi , Daria A Gaykalova

Chromatin structure regulates cancer-specific alternative splicing events in primary HPV-related oropharyngeal squamous cell carcinoma.

Epigenetics

Avec: Theresa Guo , Kristina Diana A Zambo , Fernando T Zamuner , Tingting Ou , Christopher Hopkins , Dylan Z Kelley , Hildegard A Wulf , Eli Winkler , Rossin Erbe , Ludmila Danilova , Michael Considine , David Sidransky , Alexander Favorov , Liliana Florea , Elana J Fertig , Daria A Gaykalova

Identification of CT-based non-invasive Radiographic Biomarkers for Overall Survival Stratification in Oral Cavity Squamous Cell Carcinoma.

Research square

Avec: Xiao Ling , Gregory S Alexander , Jason Molitoris , Jinhyuk Choi , Lisa Schumaker , Ranee Mehra , Daria A Gaykalova , Lei Ren

Unveiling the Role of PIK3R1 in Cancer: A Comprehensive Review of Regulatory Signaling and Therapeutic Implications.

Seminars in cancer biology

Avec: Ishita Gupta , Daria A Gaykalova

SpliceMutr enables pan-cancer analysis of splicing-derived neoantigen burden in tumors.

Cancer research communications

Avec: Theron Palmer , Michael D Kessler , Xiaoshan M Shao , Archana Balan , Mark Yarchoan , Neeha Zaidi , Tamara Y Lopez-Vidal , Ali M Saeed , Jessica Gore , Nilofer S Azad , Elizabeth M Jaffee , Alexander V Favorov , Valsamo Anagnostou , Rachel Karchin , Daria A Gaykalova , Elana J Fertig , Ludmila Danilova

Réseau de co-auteurs

Elana J Fertig 12 collaborations

Alexander V Favorov 6 collaborations

Theresa Guo 5 collaborations

Srinivasan Yegnasubramanian 5 collaborations

Joseph A Califano 5 collaborations

Michael Considine 5 collaborations

Luciane T Kagohara 4 collaborations

Ludmila Danilova 4 collaborations

Rossin Erbe 3 collaborations

Mizuo Ando 3 collaborations

Guorong Xu 3 collaborations

Shuling Ren 3 collaborations

Akihiro Sakai 3 collaborations

Takahito Fukusumi 3 collaborations

Chao Liu 3 collaborations

Pablo Tamayo 3 collaborations

Trey Ideker 3 collaborations

Lisa Schumaker 3 collaborations

Ranee Mehra 3 collaborations

Emily F Davis-Marcisak 3 collaborations

Gaurav Sharma 3 collaborations

Jessica Gore 2 collaborations

Yuki Saito 2 collaborations

Nam Q Bui 2 collaborations

Kate Medetgul-Ernar 2 collaborations

Minya Pu 2 collaborations

Kathleen Fisch 2 collaborations

Sunny Haft 2 collaborations

John Pang 2 collaborations

Adam Mark 2 collaborations

Patrick Ha 2 collaborations

Tatsuya Yamasoba 2 collaborations

Karen Messer 2 collaborations

Wayne M Koch 2 collaborations

Fernando Zamuner 2 collaborations

Jawara Allen 2 collaborations

Ishita Gupta 2 collaborations

Xiao Ling 2 collaborations

Gregory S Alexander 2 collaborations

Jason Molitoris 2 collaborations

Jinhyuk Choi 2 collaborations

Lei Ren 2 collaborations

Michael D Kessler 2 collaborations

Elizabeth M Jaffee 2 collaborations

Dylan Z Kelley 2 collaborations

Alexander Favorov 2 collaborations

Kelly Gemmill 1 collaboration

Nyall R London 1 collaboration

Lisa M Rooper 1 collaboration

Justin A Bishop 1 collaboration

Haiying Xu 1 collaboration

Lydia J Bernhardt 1 collaboration

Masaru Ishii 1 collaboration

Christine L Hann 1 collaboration

Janis M Taube 1 collaboration

Evgeny Izumchenko 1 collaboration

Gary L Gallia 1 collaboration

Elizabeth Mambo 1 collaboration

Ashish Choudhary 1 collaboration

Jeffery Houghton 1 collaboration

Kalyan Buddavarapu 1 collaboration

Tiffany Sanford 1 collaboration

Will Darden 1 collaboration

Alex Adai 1 collaboration

Andrew Hadd 1 collaboration

Gary Latham 1 collaboration

Ludmila V Danilova 1 collaboration

Justin Bishop 1 collaboration

Ryan J Li 1 collaboration

William H Westra 1 collaboration

Patrick Hennessey 1 collaboration

Michael F Ochs 1 collaboration

Wenyue Sun 1 collaboration

Zejia Yang 1 collaboration

Jipei Liao 1 collaboration

Brandon Carter-Cooper 1 collaboration

Rena G Lapidus 1 collaboration

Xiaoxuan Fan 1 collaboration

Kevin J Cullen 1 collaboration

Hancai Dan 1 collaboration

Juan Luis Callejas-Valera 1 collaboration

Mike Allevato 1 collaboration

Mara Gilardi 1 collaboration

Jessica Santos 1 collaboration

Sayed Sadat 1 collaboration

Kathleen M Fisch 1 collaboration

Zhiyong Wang 1 collaboration

Alfredo A Molinolo 1 collaboration

J Silvio Gutkind 1 collaboration

Fariba Badrzadeh 1 collaboration

Yuri Tsentalovich 1 collaboration

Hariharan Easwaran 1 collaboration

Dimitrios N Sidiropoulos 1 collaboration

Christine I Rafie 1 collaboration

Julie K Jang 1 collaboration

Sofi Castanon 1 collaboration

Aaron G Baugh 1 collaboration

Edgar Gonzalez 1 collaboration

Brian J Christmas 1 collaboration

Valerie H Narumi 1 collaboration

Emma Bigelow 1 collaboration

Ajay Vaghasia 1 collaboration

Anuj Gupta 1 collaboration

Alyza Skaist 1 collaboration

Sarah J Wheelan 1 collaboration

Sathish Kumar Ganesan 1 collaboration

Min Yu 1 collaboration

Vered Stearns 1 collaboration

Roisin M Connolly 1 collaboration

Evanthia T Roussos Torres 1 collaboration

Pavel Hurník 1 collaboration

Zuzana Chyra 1 collaboration

Tereza Ševčíková 1 collaboration

Jan Štembírek 1 collaboration

Kateřina Smešný Trtková 1 collaboration

Marcela Buchtová 1 collaboration

Eva Hrubá 1 collaboration

Emily L Flam 1 collaboration

Elena Stavrovskaya 1 collaboration

Jiang Qian 1 collaboration

Tatiana Lopatina 1 collaboration

Enrica Favaro 1 collaboration

Tiziana Martone 1 collaboration

Benedetta Bussolati 1 collaboration

Renato Romagnoli 1 collaboration

Roberto Albera 1 collaboration

Giancarlo Pecorari 1 collaboration

Maria Felice Brizzi 1 collaboration

Giovanni Camussi 1 collaboration

Kristina Diana A Zambo 1 collaboration

Fernando T Zamuner 1 collaboration

Tingting Ou 1 collaboration

Christopher Hopkins 1 collaboration

Hildegard A Wulf 1 collaboration

Eli Winkler 1 collaboration

David Sidransky 1 collaboration

Liliana Florea 1 collaboration

Theron Palmer 1 collaboration

Xiaoshan M Shao 1 collaboration

Archana Balan 1 collaboration

Mark Yarchoan 1 collaboration

Neeha Zaidi 1 collaboration

Tamara Y Lopez-Vidal 1 collaboration

Ali M Saeed 1 collaboration

Nilofer S Azad 1 collaboration

Valsamo Anagnostou 1 collaboration

Rachel Karchin 1 collaboration