Charles S Greene

Publications (3)

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.

Genome biology

Avec: Naihui Zhou , Yuxiang Jiang , Timothy R Bergquist , Alexandra J Lee , Balint Z Kacsoh , Alex W Crocker , Kimberley A Lewis , George Georghiou , Huy N Nguyen , Md Nafiz Hamid , Larry Davis , Tunca Dogan , Volkan Atalay , Ahmet S Rifaioglu , Alperen Dalkıran , Rengul Cetin Atalay , Chengxin Zhang , Rebecca L Hurto , Peter L Freddolino , Yang Zhang , Prajwal Bhat , Fran Supek , José M Fernández , Branislava Gemovic , Vladimir R Perovic , Radoslav S Davidović , Neven Sumonja , Nevena Veljkovic , Ehsaneddin Asgari , Mohammad R K Mofrad , Giuseppe Profiti , Castrense Savojardo , Pier Luigi Martelli , Rita Casadio , Florian Boecker , Heiko Schoof , Indika Kahanda , Natalie Thurlby , Alice C McHardy , Alexandre Renaux , Rabie Saidi , Julian Gough , Alex A Freitas , Magdalena Antczak , Fabio Fabris , Mark N Wass , Jie Hou , Jianlin Cheng , Zheng Wang , Alfonso E Romero , Alberto Paccanaro , Haixuan Yang , Tatyana Goldberg , Chenguang Zhao , Liisa Holm , Petri Törönen , Alan J Medlar , Elaine Zosa , Itamar Borukhov , Ilya Novikov , Angela Wilkins , Olivier Lichtarge , Po-Han Chi , Wei-Cheng Tseng , Michal Linial , Peter W Rose , Christophe Dessimoz , Vedrana Vidulin , Saso Dzeroski , Ian Sillitoe , Sayoni Das , Jonathan Gill Lees , David T Jones , Cen Wan , Domenico Cozzetto , Rui Fa , Mateo Torres , Alex Warwick Vesztrocy , Jose Manuel Rodriguez , Michael L Tress , Marco Frasca , Marco Notaro , Giuliano Grossi , Alessandro Petrini , Matteo Re , Giorgio Valentini , Marco Mesiti , Daniel B Roche , Jonas Reeb , David W Ritchie , Sabeur Aridhi , Seyed Ziaeddin Alborzi , Marie-Dominique Devignes , Da Chen Emily Koo , Richard Bonneau , Vladimir Gligorijević , Meet Barot , Hai Fang , Stefano Toppo , Enrico Lavezzo , Marco Falda , Michele Berselli , Silvio C E Tosatto , Marco Carraro , Damiano Piovesan , Hafeez Ur Rehman , Qizhong Mao , Shanshan Zhang , Slobodan Vucetic , Gage S Black , Dane Jo , Erica Suh , Jonathan B Dayton , Dallas J Larsen , Ashton R Omdahl , Liam J McGuffin , Danielle A Brackenridge , Patricia C Babbitt , Jeffrey M Yunes , Paolo Fontana , Feng Zhang , Shanfeng Zhu , Ronghui You , Zihan Zhang , Suyang Dai , Shuwei Yao , Weidong Tian , Renzhi Cao , Caleb Chandler , Miguel Amezola , Devon Johnson , Jia-Ming Chang , Wen-Hung Liao , Yi-Wei Liu , Stefano Pascarelli , Yotam Frank , Robert Hoehndorf , Maxat Kulmanov , Imane Boudellioua , Gianfranco Politano , Stefano Di Carlo , Alfredo Benso , Kai Hakala , Filip Ginter , Farrokh Mehryary , Suwisa Kaewphan , Jari Björne , Hans Moen , Martti E E Tolvanen , Tapio Salakoski , Daisuke Kihara , Aashish Jain , Tomislav Šmuc , Adrian Altenhoff , Asa Ben-Hur , Burkhard Rost , Steven E Brenner , Christine A Orengo , Constance J Jeffery , Giovanni Bosco , Deborah A Hogan , Maria J Martin , Claire O'Donovan , Sean D Mooney , Casey S Greene , Predrag Radivojac , Iddo Friedberg

The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.

Developmental cell

Avec: Deanne M Taylor , Bruce J Aronow , Kai Tan , Kathrin Bernt , Nathan Salomonis , Casey S Greene , Alina Frolova , Sarah E Henrickson , Andrew Wells , Liming Pei , Jyoti K Jaiswal , Jeffrey Whitsett , Kathryn E Hamilton , Sonya A MacParland , Judith Kelsen , Robert O Heuckeroth , S Steven Potter , Laura A Vella , Natalie A Terry , Louis R Ghanem , Benjamin C Kennedy , Ingo Helbig , Kathleen E Sullivan , Leslie Castelo-Soccio , Arnold Kreigstein , Florian Herse , Martijn C Nawijn , Gerard H Koppelman , Melissa Haendel , Nomi L Harris , Jo Lynne Rokita , Yuanchao Zhang , Aviv Regev , Orit Rozenblatt-Rosen , Jennifer E Rood , Timothy L Tickle , Roser Vento-Tormo , Saif Alimohamed , Monkol Lek , Jessica C Mar , Kathleen M Loomes , David M Barrett , Prech Uapinyoying , Alan H Beggs , Pankaj B Agrawal , Yi-Wen Chen , Amanda B Muir , Lana X Garmire , Scott B Snapper , Javad Nazarian , Steven H Seeholzer , Hossein Fazelinia , Larry N Singh , Robert B Faryabi , Pichai Raman , Noor Dawany , Hongbo Michael Xie , Batsal Devkota , Sharon J Diskin , Stewart A Anderson , Eric F Rappaport , William Peranteau , Kathryn A Wikenheiser-Brokamp , Sarah Teichmann , Douglas Wallace , Tao Peng , Yang-Yang Ding , Man S Kim , Yi Xing , Sek Won Kong , Carsten G Bönnemann , Kenneth D Mandl , Peter S White

Embracing study heterogeneity for finding genetic interactions in large-scale research consortia.

Genetic epidemiology

Avec: Yulun Liu , Jing Huang , Ryan J Urbanowicz , Kun Chen , Elisabetta Manduchi , Casey S Greene , Jason H Moore , Paul Scheet , Yong Chen

Réseau de co-auteurs

Casey S Greene 3 collaborations

Naihui Zhou 1 collaboration

Yuxiang Jiang 1 collaboration

Timothy R Bergquist 1 collaboration

Alexandra J Lee 1 collaboration

Balint Z Kacsoh 1 collaboration

Alex W Crocker 1 collaboration

Kimberley A Lewis 1 collaboration

George Georghiou 1 collaboration

Huy N Nguyen 1 collaboration

Md Nafiz Hamid 1 collaboration

Larry Davis 1 collaboration

Tunca Dogan 1 collaboration

Volkan Atalay 1 collaboration

Ahmet S Rifaioglu 1 collaboration

Alperen Dalkıran 1 collaboration

Rengul Cetin Atalay 1 collaboration

Chengxin Zhang 1 collaboration

Rebecca L Hurto 1 collaboration

Peter L Freddolino 1 collaboration

Yang Zhang 1 collaboration

Prajwal Bhat 1 collaboration

Fran Supek 1 collaboration

José M Fernández 1 collaboration

Branislava Gemovic 1 collaboration

Vladimir R Perovic 1 collaboration

Radoslav S Davidović 1 collaboration

Neven Sumonja 1 collaboration

Nevena Veljkovic 1 collaboration

Ehsaneddin Asgari 1 collaboration

Mohammad R K Mofrad 1 collaboration

Giuseppe Profiti 1 collaboration

Castrense Savojardo 1 collaboration

Pier Luigi Martelli 1 collaboration

Rita Casadio 1 collaboration

Florian Boecker 1 collaboration

Heiko Schoof 1 collaboration

Indika Kahanda 1 collaboration

Natalie Thurlby 1 collaboration

Alice C McHardy 1 collaboration

Alexandre Renaux 1 collaboration

Rabie Saidi 1 collaboration

Julian Gough 1 collaboration

Alex A Freitas 1 collaboration

Magdalena Antczak 1 collaboration

Fabio Fabris 1 collaboration

Mark N Wass 1 collaboration

Jie Hou 1 collaboration

Jianlin Cheng 1 collaboration

Zheng Wang 1 collaboration

Alfonso E Romero 1 collaboration

Alberto Paccanaro 1 collaboration

Haixuan Yang 1 collaboration

Tatyana Goldberg 1 collaboration

Chenguang Zhao 1 collaboration

Liisa Holm 1 collaboration

Petri Törönen 1 collaboration

Alan J Medlar 1 collaboration

Elaine Zosa 1 collaboration

Itamar Borukhov 1 collaboration

Ilya Novikov 1 collaboration

Angela Wilkins 1 collaboration

Olivier Lichtarge 1 collaboration

Po-Han Chi 1 collaboration

Wei-Cheng Tseng 1 collaboration

Michal Linial 1 collaboration

Peter W Rose 1 collaboration

Christophe Dessimoz 1 collaboration

Vedrana Vidulin 1 collaboration

Saso Dzeroski 1 collaboration

Ian Sillitoe 1 collaboration

Sayoni Das 1 collaboration

Jonathan Gill Lees 1 collaboration

David T Jones 1 collaboration

Cen Wan 1 collaboration

Domenico Cozzetto 1 collaboration

Rui Fa 1 collaboration

Mateo Torres 1 collaboration

Alex Warwick Vesztrocy 1 collaboration

Jose Manuel Rodriguez 1 collaboration

Michael L Tress 1 collaboration

Marco Frasca 1 collaboration

Marco Notaro 1 collaboration

Giuliano Grossi 1 collaboration

Alessandro Petrini 1 collaboration

Matteo Re 1 collaboration

Giorgio Valentini 1 collaboration

Marco Mesiti 1 collaboration

Daniel B Roche 1 collaboration

Jonas Reeb 1 collaboration

David W Ritchie 1 collaboration

Sabeur Aridhi 1 collaboration

Seyed Ziaeddin Alborzi 1 collaboration

Marie-Dominique Devignes 1 collaboration

Da Chen Emily Koo 1 collaboration

Richard Bonneau 1 collaboration

Vladimir Gligorijević 1 collaboration

Meet Barot 1 collaboration

Hai Fang 1 collaboration

Stefano Toppo 1 collaboration

Enrico Lavezzo 1 collaboration

Marco Falda 1 collaboration

Michele Berselli 1 collaboration

Silvio C E Tosatto 1 collaboration

Marco Carraro 1 collaboration

Damiano Piovesan 1 collaboration

Hafeez Ur Rehman 1 collaboration

Qizhong Mao 1 collaboration

Shanshan Zhang 1 collaboration

Slobodan Vucetic 1 collaboration

Gage S Black 1 collaboration

Dane Jo 1 collaboration

Erica Suh 1 collaboration

Jonathan B Dayton 1 collaboration

Dallas J Larsen 1 collaboration

Ashton R Omdahl 1 collaboration

Liam J McGuffin 1 collaboration

Danielle A Brackenridge 1 collaboration

Patricia C Babbitt 1 collaboration

Jeffrey M Yunes 1 collaboration

Paolo Fontana 1 collaboration

Feng Zhang 1 collaboration

Shanfeng Zhu 1 collaboration

Ronghui You 1 collaboration

Zihan Zhang 1 collaboration

Suyang Dai 1 collaboration

Shuwei Yao 1 collaboration

Weidong Tian 1 collaboration

Renzhi Cao 1 collaboration

Caleb Chandler 1 collaboration

Miguel Amezola 1 collaboration

Devon Johnson 1 collaboration

Jia-Ming Chang 1 collaboration

Wen-Hung Liao 1 collaboration

Yi-Wei Liu 1 collaboration

Stefano Pascarelli 1 collaboration

Yotam Frank 1 collaboration

Robert Hoehndorf 1 collaboration

Maxat Kulmanov 1 collaboration

Imane Boudellioua 1 collaboration

Gianfranco Politano 1 collaboration

Stefano Di Carlo 1 collaboration

Alfredo Benso 1 collaboration

Kai Hakala 1 collaboration

Filip Ginter 1 collaboration

Farrokh Mehryary 1 collaboration

Suwisa Kaewphan 1 collaboration

Jari Björne 1 collaboration

Hans Moen 1 collaboration

Martti E E Tolvanen 1 collaboration

Tapio Salakoski 1 collaboration

Daisuke Kihara 1 collaboration

Aashish Jain 1 collaboration

Tomislav Šmuc 1 collaboration

Adrian Altenhoff 1 collaboration

Asa Ben-Hur 1 collaboration

Burkhard Rost 1 collaboration

Steven E Brenner 1 collaboration

Christine A Orengo 1 collaboration

Constance J Jeffery 1 collaboration

Giovanni Bosco 1 collaboration

Deborah A Hogan 1 collaboration

Maria J Martin 1 collaboration

Claire O'Donovan 1 collaboration

Sean D Mooney 1 collaboration

Predrag Radivojac 1 collaboration

Iddo Friedberg 1 collaboration

Deanne M Taylor 1 collaboration

Bruce J Aronow 1 collaboration

Kai Tan 1 collaboration

Kathrin Bernt 1 collaboration

Nathan Salomonis 1 collaboration

Alina Frolova 1 collaboration

Sarah E Henrickson 1 collaboration

Andrew Wells 1 collaboration

Liming Pei 1 collaboration

Jyoti K Jaiswal 1 collaboration

Jeffrey Whitsett 1 collaboration

Kathryn E Hamilton 1 collaboration

Sonya A MacParland 1 collaboration

Judith Kelsen 1 collaboration

Robert O Heuckeroth 1 collaboration

S Steven Potter 1 collaboration

Laura A Vella 1 collaboration

Natalie A Terry 1 collaboration

Louis R Ghanem 1 collaboration

Benjamin C Kennedy 1 collaboration

Ingo Helbig 1 collaboration

Kathleen E Sullivan 1 collaboration

Leslie Castelo-Soccio 1 collaboration

Arnold Kreigstein 1 collaboration

Florian Herse 1 collaboration

Martijn C Nawijn 1 collaboration

Gerard H Koppelman 1 collaboration

Melissa Haendel 1 collaboration

Nomi L Harris 1 collaboration

Jo Lynne Rokita 1 collaboration

Yuanchao Zhang 1 collaboration

Aviv Regev 1 collaboration

Orit Rozenblatt-Rosen 1 collaboration

Jennifer E Rood 1 collaboration

Timothy L Tickle 1 collaboration

Roser Vento-Tormo 1 collaboration

Saif Alimohamed 1 collaboration

Monkol Lek 1 collaboration

Jessica C Mar 1 collaboration

Kathleen M Loomes 1 collaboration

David M Barrett 1 collaboration

Prech Uapinyoying 1 collaboration

Alan H Beggs 1 collaboration

Pankaj B Agrawal 1 collaboration

Yi-Wen Chen 1 collaboration

Amanda B Muir 1 collaboration

Lana X Garmire 1 collaboration

Scott B Snapper 1 collaboration

Javad Nazarian 1 collaboration

Steven H Seeholzer 1 collaboration

Hossein Fazelinia 1 collaboration

Larry N Singh 1 collaboration

Robert B Faryabi 1 collaboration

Pichai Raman 1 collaboration

Noor Dawany 1 collaboration

Hongbo Michael Xie 1 collaboration

Batsal Devkota 1 collaboration

Sharon J Diskin 1 collaboration

Stewart A Anderson 1 collaboration

Eric F Rappaport 1 collaboration

William Peranteau 1 collaboration

Kathryn A Wikenheiser-Brokamp 1 collaboration

Sarah Teichmann 1 collaboration

Douglas Wallace 1 collaboration

Tao Peng 1 collaboration

Yang-Yang Ding 1 collaboration

Man S Kim 1 collaboration

Yi Xing 1 collaboration

Sek Won Kong 1 collaboration

Carsten G Bönnemann 1 collaboration

Kenneth D Mandl 1 collaboration

Peter S White 1 collaboration

Yulun Liu 1 collaboration

Jing Huang 1 collaboration

Ryan J Urbanowicz 1 collaboration

Kun Chen 1 collaboration

Elisabetta Manduchi 1 collaboration

Jason H Moore 1 collaboration

Paul Scheet 1 collaboration

Yong Chen 1 collaboration