Ceyda Coruh

Affiliations

Plant Molecular and Cellular Biology Laboratory, Salk Institute for Biological Studies, La Jolla, CA, USA.

Publications (9)

Circular ecDNA promotes accessible chromatin and high oncogene expression.

Nature

Avec: Sihan Wu , Kristen M Turner , Nam Nguyen , Ramya Raviram , Marcella Erb , Jennifer Santini , Jens Luebeck , Utkrisht Rajkumar , Yarui Diao , Bin Li , Wenjing Zhang , Nathan Jameson , M Ryan Corces , Jeffrey M Granja , Xingqi Chen , Ceyda Coruh , Armen Abnousi , Jack Houston , Zhen Ye , Rong Hu , Miao Yu , Hoon Kim , Julie A Law , Roel G W Verhaak , Ming Hu , Frank B Furnari , Howard Y Chang , Bing Ren , Vineet Bafna , Paul S Mischel

CLSY docking to Pol IV requires a conserved domain critical for small RNA biogenesis and transposon silencing.

bioRxiv : the preprint server for biology

Avec: Luisa Felgines , Bart Rymen , Laura M Martins , Guanghui Xu , Calvin Matteoli , Christophe Himber , Ming Zhou , Josh Eis , Ceyda Coruh , Marcel Böhrer , Lauriane Kuhn , Johana Chicher , Vijaya Pandey , Philippe Hammann , James Wohlschlegel , Florent Waltz , Julie A Law , Todd Blevins

Chemoenzymatic labeling of DNA methylation patterns for single-molecule epigenetic mapping.

Nucleic acids research

Avec: Tslil Gabrieli , Yael Michaeli , Sigal Avraham , Dmitry Torchinsky , Sapir Margalit , Leonie Schütz , Matyas Juhasz , Ceyda Coruh , Nissim Arbib , Zhaohui Sunny Zhou , Julie A Law , Elmar Weinhold , Yuval Ebenstein

Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH.

Nature genetics

Avec: King L Hung , Jens Luebeck , Siavash R Dehkordi , Caterina I Colón , Rui Li , Ivy Tsz-Lo Wong , Ceyda Coruh , Prashanthi Dharanipragada , Shirley H Lomeli , Natasha E Weiser , Gatien Moriceau , Xiao Zhang , Chris Bailey , Kathleen E Houlahan , Wenting Yang , Rocío Chamorro González , Charles Swanton , Christina Curtis , Mariam Jamal-Hanjani , Anton G Henssen , Julie A Law , William J Greenleaf , Roger S Lo , Paul S Mischel , Vineet Bafna , Howard Y Chang

AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications.

Nature communications

Avec: Jens Luebeck , Ceyda Coruh , Siavash R Dehkordi , Joshua T Lange , Kristen M Turner , Viraj Deshpande , Dave A Pai , Chao Zhang , Utkrisht Rajkumar , Julie A Law , Paul S Mischel , Vineet Bafna

Plasma cell-free DNA hydroxymethylation profiling reveals anti-PD-1 treatment response and resistance biology in non-small cell lung cancer.

Journal for immunotherapy of cancer

Avec: Gulfem D Guler , Yuhong Ning , Ceyda Coruh , Giuliana P Mognol , Tierney Phillips , Maryam Nabiyouni , Kyle Hazen , Aaron Scott , Wayne Volkmuth , Samuel Levy

Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants.

Genome research

Avec: Alice Lunardon , Nathan R Johnson , Emily Hagerott , Tamia Phifer , Seth Polydore , Ceyda Coruh , Michael J Axtell

The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis.

Nature communications

Avec: Ming Zhou , Ceyda Coruh , Guanghui Xu , Laura M Martins , Clara Bourbousse , Alice Lambolez , Julie A Law

Breakage fusion bridge cycles drive high oncogene copy number, but not intratumoral genetic heterogeneity or rapid cancer genome change.

bioRxiv : the preprint server for biology

Avec: Siavash Raeisi Dehkordi , Ivy Tsz-Lo Wong , Jing Ni , Jens Luebeck , Kaiyuan Zhu , Gino Prasad , Lena Krockenberger , Guanghui Xu , Biswanath Chowdhury , Utkrisht Rajkumar , Ann Caplin , Daniel Muliaditan , Ceyda Coruh , Qiushi Jin , Kristen Turner , Shu Xian Teo , Andy Wing Chun Pang , Ludmil B Alexandrov , Christelle En Lin Chua , Frank B Furnari , Thomas G Paulson , Julie A Law , Howard Y Chang , Feng Yue , Ramanuj DasGupta , Jean Zhao , Paul S Mischel , Vineet Bafna

Réseau de co-auteurs

Julie A Law 7 collaborations

Jens Luebeck 4 collaborations

Vineet Bafna 4 collaborations

Paul S Mischel 4 collaborations

Utkrisht Rajkumar 3 collaborations

Howard Y Chang 3 collaborations

Guanghui Xu 3 collaborations

Kristen M Turner 2 collaborations

Frank B Furnari 2 collaborations

Laura M Martins 2 collaborations

Ming Zhou 2 collaborations

Siavash R Dehkordi 2 collaborations

Ivy Tsz-Lo Wong 2 collaborations

Sihan Wu 1 collaboration

Nam Nguyen 1 collaboration

Ramya Raviram 1 collaboration

Marcella Erb 1 collaboration

Jennifer Santini 1 collaboration

Yarui Diao 1 collaboration

Bin Li 1 collaboration

Wenjing Zhang 1 collaboration

Nathan Jameson 1 collaboration

M Ryan Corces 1 collaboration

Jeffrey M Granja 1 collaboration

Xingqi Chen 1 collaboration

Armen Abnousi 1 collaboration

Jack Houston 1 collaboration

Zhen Ye 1 collaboration

Rong Hu 1 collaboration

Miao Yu 1 collaboration

Hoon Kim 1 collaboration

Roel G W Verhaak 1 collaboration

Ming Hu 1 collaboration

Bing Ren 1 collaboration

Luisa Felgines 1 collaboration

Bart Rymen 1 collaboration

Calvin Matteoli 1 collaboration

Christophe Himber 1 collaboration

Josh Eis 1 collaboration

Marcel Böhrer 1 collaboration

Lauriane Kuhn 1 collaboration

Johana Chicher 1 collaboration

Vijaya Pandey 1 collaboration

Philippe Hammann 1 collaboration

James Wohlschlegel 1 collaboration

Florent Waltz 1 collaboration

Todd Blevins 1 collaboration

Tslil Gabrieli 1 collaboration

Yael Michaeli 1 collaboration

Sigal Avraham 1 collaboration

Dmitry Torchinsky 1 collaboration

Sapir Margalit 1 collaboration

Leonie Schütz 1 collaboration

Matyas Juhasz 1 collaboration

Nissim Arbib 1 collaboration

Zhaohui Sunny Zhou 1 collaboration

Elmar Weinhold 1 collaboration

Yuval Ebenstein 1 collaboration

King L Hung 1 collaboration

Caterina I Colón 1 collaboration

Rui Li 1 collaboration

Prashanthi Dharanipragada 1 collaboration

Shirley H Lomeli 1 collaboration

Natasha E Weiser 1 collaboration

Gatien Moriceau 1 collaboration

Xiao Zhang 1 collaboration

Chris Bailey 1 collaboration

Kathleen E Houlahan 1 collaboration

Wenting Yang 1 collaboration

Rocío Chamorro González 1 collaboration

Charles Swanton 1 collaboration

Christina Curtis 1 collaboration

Mariam Jamal-Hanjani 1 collaboration

Anton G Henssen 1 collaboration

William J Greenleaf 1 collaboration

Roger S Lo 1 collaboration

Joshua T Lange 1 collaboration

Viraj Deshpande 1 collaboration

Dave A Pai 1 collaboration

Chao Zhang 1 collaboration

Gulfem D Guler 1 collaboration

Yuhong Ning 1 collaboration

Giuliana P Mognol 1 collaboration

Tierney Phillips 1 collaboration

Maryam Nabiyouni 1 collaboration

Kyle Hazen 1 collaboration

Aaron Scott 1 collaboration

Wayne Volkmuth 1 collaboration

Samuel Levy 1 collaboration

Alice Lunardon 1 collaboration

Nathan R Johnson 1 collaboration

Emily Hagerott 1 collaboration

Tamia Phifer 1 collaboration

Seth Polydore 1 collaboration

Michael J Axtell 1 collaboration

Clara Bourbousse 1 collaboration

Alice Lambolez 1 collaboration

Siavash Raeisi Dehkordi 1 collaboration

Jing Ni 1 collaboration

Kaiyuan Zhu 1 collaboration

Gino Prasad 1 collaboration

Lena Krockenberger 1 collaboration

Biswanath Chowdhury 1 collaboration

Ann Caplin 1 collaboration

Daniel Muliaditan 1 collaboration

Qiushi Jin 1 collaboration

Kristen Turner 1 collaboration

Shu Xian Teo 1 collaboration

Andy Wing Chun Pang 1 collaboration

Ludmil B Alexandrov 1 collaboration

Christelle En Lin Chua 1 collaboration

Thomas G Paulson 1 collaboration

Feng Yue 1 collaboration

Ramanuj DasGupta 1 collaboration

Jean Zhao 1 collaboration