Brandon Jew

Affiliations

Bioinformatics Interdepartmental Program, University of California, Los Angeles, CA, USA.

Publications (12)

An automated machine learning-based model predicts postoperative mortality using readily-extractable preoperative electronic health record data.

British journal of anaesthesia

Avec: Brian L Hill , Robert Brown , Eilon Gabel , Nadav Rakocz , Christine Lee , Maxime Cannesson , Pierre Baldi , Loes Olde Loohuis , Ruth Johnson , Brandon Jew , Uri Maoz , Aman Mahajan , Sriram Sankararaman , Ira Hofer , Eran Halperin

Accurate estimation of cell composition in bulk expression through robust integration of single-cell information.

Nature communications

Avec: Brandon Jew , Marcus Alvarez , Elior Rahmani , Zong Miao , Arthur Ko , Kristina M Garske , Jae Hoon Sul , Kirsi H Pietiläinen , Päivi Pajukanta , Eran Halperin

ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest.

PLoS computational biology

Avec: Jiajin Li , Brandon Jew , Lingyu Zhan , Sungoo Hwang , Giovanni Coppola , Nelson B Freimer , Jae Hoon Sul

Leveraging allelic imbalance to refine fine-mapping for eQTL studies.

PLoS genetics

Avec: Jennifer Zou , Farhad Hormozdiari , Brandon Jew , Stephane E Castel , Tuuli Lappalainen , Jason Ernst , Jae Hoon Sul , Eleazar Eskin

Publisher Correction: Accurate estimation of cell composition in bulk expression through robust integration of single-cell information.

Nature communications

Avec: Brandon Jew , Marcus Alvarez , Elior Rahmani , Zong Miao , Arthur Ko , Kristina M Garske , Jae Hoon Sul , Kirsi H Pietiläinen , Päivi Pajukanta , Eran Halperin

xGAP: a python based efficient, modular, extensible and fault tolerant genomic analysis pipeline for variant discovery.

Bioinformatics (Oxford, England)

Avec: Aditya Gorla , Brandon Jew , Luke Zhang , Jae Hoon Sul

The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis.

Frontiers in bioinformatics

Avec: Elior Rahmani , Brandon Jew , Eran Halperin

Variant calling and quality control of large-scale human genome sequencing data.

Emerging topics in life sciences

Avec: Brandon Jew , Jae Hoon Sul

Enhancing droplet-based single-nucleus RNA-seq resolution using the semi-supervised machine learning classifier DIEM.

Scientific reports

Avec: Marcus Alvarez , Elior Rahmani , Brandon Jew , Kristina M Garske , Zong Miao , Jihane N Benhammou , Chun Jimmie Ye , Joseph R Pisegna , Kirsi H Pietiläinen , Eran Halperin , Päivi Pajukanta

The causal effect of obesity on prediabetes and insulin resistance reveals the important role of adipose tissue in insulin resistance.

PLoS genetics

Avec: Zong Miao , Marcus Alvarez , Arthur Ko , Yash Bhagat , Elior Rahmani , Brandon Jew , Sini Heinonen , Linda Liliana Muñoz-Hernandez , Miguel Herrera-Hernandez , Carlos Aguilar-Salinas , Teresa Tusie-Luna , Karen L Mohlke , Markku Laakso , Kirsi H Pietiläinen , Eran Halperin , Päivi Pajukanta

Rare variants in the endocytic pathway are associated with Alzheimer's disease, its related phenotypes, and functional consequences.

PLoS genetics

Avec: Lingyu Zhan , Jiajin Li , Brandon Jew , Jae Hoon Sul

A machine learning algorithm to increase COVID-19 inpatient diagnostic capacity.

PloS one

Avec: David Goodman-Meza , Akos Rudas , Jeffrey N Chiang , Paul C Adamson , Joseph Ebinger , Nancy Sun , Patrick Botting , Jennifer A Fulcher , Faysal G Saab , Rachel Brook , Eleazar Eskin , Ulzee An , Misagh Kordi , Brandon Jew , Brunilda Balliu , Zeyuan Chen , Brian L Hill , Elior Rahmani , Eran Halperin , Vladimir Manuel

Réseau de co-auteurs

Eran Halperin 7 collaborations

Jae Hoon Sul 7 collaborations

Elior Rahmani 6 collaborations

Marcus Alvarez 4 collaborations

Zong Miao 4 collaborations

Kirsi H Pietiläinen 4 collaborations

Päivi Pajukanta 4 collaborations

Arthur Ko 3 collaborations

Kristina M Garske 3 collaborations

Brian L Hill 2 collaborations

Jiajin Li 2 collaborations

Lingyu Zhan 2 collaborations

Eleazar Eskin 2 collaborations

Robert Brown 1 collaboration

Eilon Gabel 1 collaboration

Nadav Rakocz 1 collaboration

Christine Lee 1 collaboration

Maxime Cannesson 1 collaboration

Pierre Baldi 1 collaboration

Loes Olde Loohuis 1 collaboration

Ruth Johnson 1 collaboration

Uri Maoz 1 collaboration

Aman Mahajan 1 collaboration

Sriram Sankararaman 1 collaboration

Ira Hofer 1 collaboration

Sungoo Hwang 1 collaboration

Giovanni Coppola 1 collaboration

Nelson B Freimer 1 collaboration

Jennifer Zou 1 collaboration

Farhad Hormozdiari 1 collaboration

Stephane E Castel 1 collaboration

Tuuli Lappalainen 1 collaboration

Jason Ernst 1 collaboration

Aditya Gorla 1 collaboration

Luke Zhang 1 collaboration

Jihane N Benhammou 1 collaboration

Chun Jimmie Ye 1 collaboration

Joseph R Pisegna 1 collaboration

Yash Bhagat 1 collaboration

Sini Heinonen 1 collaboration

Linda Liliana Muñoz-Hernandez 1 collaboration

Miguel Herrera-Hernandez 1 collaboration

Carlos Aguilar-Salinas 1 collaboration

Teresa Tusie-Luna 1 collaboration

Karen L Mohlke 1 collaboration

Markku Laakso 1 collaboration

David Goodman-Meza 1 collaboration

Akos Rudas 1 collaboration

Jeffrey N Chiang 1 collaboration

Paul C Adamson 1 collaboration

Joseph Ebinger 1 collaboration

Nancy Sun 1 collaboration

Patrick Botting 1 collaboration

Jennifer A Fulcher 1 collaboration

Faysal G Saab 1 collaboration

Rachel Brook 1 collaboration

Ulzee An 1 collaboration

Misagh Kordi 1 collaboration

Brunilda Balliu 1 collaboration

Zeyuan Chen 1 collaboration

Vladimir Manuel 1 collaboration