Boudewijn Lelieveldt

Affiliations

Department of Radiology, Leiden University Medical Center, 2333 ZA Leiden, the Netherlands; Delft Bioinformatics Lab, INSY, TU Delft, 2628 XE Delft, the Netherlands. Electronic address: b.p.f.lelieveldt@lumc.nl.

Publications (9)

SpaceWalker enables interactive gradient exploration for spatial transcriptomics data.

Cell reports methods

Avec: Chang Li , Julian Thijssen , Thomas Kroes , Mitchell de Boer , Tamim Abdelaal , Thomas Höllt , Boudewijn Lelieveldt

A community-based transcriptomics classification and nomenclature of neocortical cell types.

Nature neuroscience

Avec: Rafael Yuste , Michael Hawrylycz , Nadia Aalling , Argel Aguilar-Valles , Detlev Arendt , Ruben Armañanzas , Giorgio A Ascoli , Concha Bielza , Vahid Bokharaie , Tobias Borgtoft Bergmann , Irina Bystron , Marco Capogna , YoonJeung Chang , Ann Clemens , Christiaan P J de Kock , Javier DeFelipe , Sandra Esmeralda Dos Santos , Keagan Dunville , Dirk Feldmeyer , Richárd Fiáth , Gordon James Fishell , Angelica Foggetti , Xuefan Gao , Parviz Ghaderi , Natalia A Goriounova , Onur Güntürkün , Kenta Hagihara , Vanessa Jane Hall , Moritz Helmstaedter , Suzana Herculano-Houzel , Markus M Hilscher , Hajime Hirase , Jens Hjerling-Leffler , Rebecca Hodge , Josh Huang , Rafiq Huda , Konstantin Khodosevich , Ole Kiehn , Henner Koch , Eric S Kuebler , Malte Kühnemund , Pedro Larrañaga , Boudewijn Lelieveldt , Emma Louise Louth , Jan H Lui , Huibert D Mansvelder , Oscar Marin , Julio Martinez-Trujillo , Homeira Moradi Chameh , Alok Nath Mohapatra , Hermany Munguba , Maiken Nedergaard , Pavel Němec , Netanel Ofer , Ulrich Gottfried Pfisterer , Samuel Pontes , William Redmond , Jean Rossier , Joshua R Sanes , Richard H Scheuermann , Esther Serrano-Saiz , Jochen F Staiger , Peter Somogyi , Gábor Tamás , Andreas Savas Tolias , Maria Antonietta Tosches , Miguel Turrero García , Christian Wozny , Thomas V Wuttke , Yong Liu , Juan Yuan , Hongkui Zeng , Ed Lein

Conserved cell types with divergent features in human versus mouse cortex.

Nature

Avec: Rebecca D Hodge , Trygve E Bakken , Jeremy A Miller , Kimberly A Smith , Eliza R Barkan , Lucas T Graybuck , Jennie L Close , Brian Long , Nelson Johansen , Osnat Penn , Zizhen Yao , Jeroen Eggermont , Thomas Höllt , Boaz P Levi , Soraya I Shehata , Brian Aevermann , Allison Beller , Darren Bertagnolli , Krissy Brouner , Tamara Casper , Charles Cobbs , Rachel Dalley , Nick Dee , Song-Lin Ding , Richard G Ellenbogen , Olivia Fong , Emma Garren , Jeff Goldy , Ryder P Gwinn , Daniel Hirschstein , C Dirk Keene , Mohamed Keshk , Andrew L Ko , Kanan Lathia , Ahmed Mahfouz , Zoe Maltzer , Medea McGraw , Thuc Nghi Nguyen , Julie Nyhus , Jeffrey G Ojemann , Aaron Oldre , Sheana Parry , Shannon Reynolds , Christine Rimorin , Nadiya V Shapovalova , Saroja Somasundaram , Aaron Szafer , Elliot R Thomsen , Michael Tieu , Gerald Quon , Richard H Scheuermann , Rafael Yuste , Susan M Sunkin , Boudewijn Lelieveldt , David Feng , Lydia Ng , Amy Bernard , Michael Hawrylycz , John W Phillips , Bosiljka Tasic , Hongkui Zeng , Allan R Jones , Christof Koch , Ed S Lein

ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data.

IEEE transactions on visualization and computer graphics

Avec: Alexander Vieth , Thomas Kroes , Julian Thijssen , Baldur van Lew , Jeroen Eggermont , Soumyadeep Basu , Elmar Eisemann , Anna Vilanova , Thomas Hollt , Boudewijn Lelieveldt

A guide to the BRAIN Initiative Cell Census Network data ecosystem.

PLoS biology

Avec: Michael Hawrylycz , Maryann E Martone , Giorgio A Ascoli , Jan G Bjaalie , Hong-Wei Dong , Satrajit S Ghosh , Jesse Gillis , Ronna Hertzano , David R Haynor , Patrick R Hof , Yongsoo Kim , Ed Lein , Yufeng Liu , Jeremy A Miller , Partha P Mitra , Eran Mukamel , Lydia Ng , David Osumi-Sutherland , Hanchuan Peng , Patrick L Ray , Raymond Sanchez , Aviv Regev , Alex Ropelewski , Richard H Scheuermann , Shawn Zheng Kai Tan , Carol L Thompson , Timothy Tickle , Hagen Tilgner , Merina Varghese , Brock Wester , Owen White , Hongkui Zeng , Brian Aevermann , David Allemang , Seth Ament , Thomas L Athey , Cody Baker , Katherine S Baker , Pamela M Baker , Anita Bandrowski , Samik Banerjee , Prajal Bishwakarma , Ambrose Carr , Min Chen , Roni Choudhury , Jonah Cool , Heather Creasy , Florence D'Orazi , Kylee Degatano , Benjamin Dichter , Song-Lin Ding , Tim Dolbeare , Joseph R Ecker , Rongxin Fang , Jean-Christophe Fillion-Robin , Timothy P Fliss , James Gee , Tom Gillespie , Nathan Gouwens , Guo-Qiang Zhang , Yaroslav O Halchenko , Nomi L Harris , Brian R Herb , Houri Hintiryan , Gregory Hood , Sam Horvath , Bingxing Huo , Dorota Jarecka , Shengdian Jiang , Farzaneh Khajouei , Elizabeth A Kiernan , Huseyin Kir , Lauren Kruse , Changkyu Lee , Boudewijn Lelieveldt , Yang Li , Hanqing Liu , Lijuan Liu , Anup Markuhar , James Mathews , Kaylee L Mathews , Chris Mezias , Michael I Miller , Tyler Mollenkopf , Shoaib Mufti , Christopher J Mungall , Joshua Orvis , Maja A Puchades , Lei Qu , Joseph P Receveur , Bing Ren , Nathan Sjoquist , Brian Staats , Daniel Tward , Cindy T J van Velthoven , Quanxin Wang , Fangming Xie , Hua Xu , Zizhen Yao , Zhixi Yun , Yun Renee Zhang , W Jim Zheng , Brian Zingg

GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data.

bioRxiv : the preprint server for biology

Avec: Chang Li , Julian Thijssen , Thomas Kroes , Ximaine van der Burg , Louise van der Weerd , Thomas Höllt , Boudewijn Lelieveldt

ImaCytE: Visual Exploration of Cellular Micro-Environments for Imaging Mass Cytometry Data.

IEEE transactions on visualization and computer graphics

Avec: Antonios Somarakis , Vincent Van Unen , Frits Koning , Boudewijn Lelieveldt , Thomas Hollt

Immune subset-committed proliferating cells populate the human foetal intestine throughout the second trimester of gestation.

Nature communications

Avec: Nannan Guo , Na Li , Li Jia , Qinyue Jiang , Mette Schreurs , Vincent van Unen , Susana M Chuva de Sousa Lopes , Alexandra A Vloemans , Jeroen Eggermont , Boudewijn Lelieveldt , Frank J T Staal , Noel F C C de Miranda , M Fernanda Pascutti , Frits Koning

A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing.

Genome research

Avec: Brian Aevermann , Yun Zhang , Mark Novotny , Mohamed Keshk , Trygve Bakken , Jeremy Miller , Rebecca Hodge , Boudewijn Lelieveldt , Ed Lein , Richard H Scheuermann

Réseau de co-auteurs

Richard H Scheuermann 4 collaborations

Julian Thijssen 3 collaborations

Thomas Kroes 3 collaborations

Thomas Höllt 3 collaborations

Michael Hawrylycz 3 collaborations

Hongkui Zeng 3 collaborations

Ed Lein 3 collaborations

Jeroen Eggermont 3 collaborations

Brian Aevermann 3 collaborations

Chang Li 2 collaborations

Rafael Yuste 2 collaborations

Giorgio A Ascoli 2 collaborations

Rebecca Hodge 2 collaborations

Jeremy A Miller 2 collaborations

Zizhen Yao 2 collaborations

Song-Lin Ding 2 collaborations

Mohamed Keshk 2 collaborations

Lydia Ng 2 collaborations

Thomas Hollt 2 collaborations

Frits Koning 2 collaborations

Mitchell de Boer 1 collaboration

Tamim Abdelaal 1 collaboration

Nadia Aalling 1 collaboration

Argel Aguilar-Valles 1 collaboration

Detlev Arendt 1 collaboration

Ruben Armañanzas 1 collaboration

Concha Bielza 1 collaboration

Vahid Bokharaie 1 collaboration

Tobias Borgtoft Bergmann 1 collaboration

Irina Bystron 1 collaboration

Marco Capogna 1 collaboration

YoonJeung Chang 1 collaboration

Ann Clemens 1 collaboration

Christiaan P J de Kock 1 collaboration

Javier DeFelipe 1 collaboration

Sandra Esmeralda Dos Santos 1 collaboration

Keagan Dunville 1 collaboration

Dirk Feldmeyer 1 collaboration

Richárd Fiáth 1 collaboration

Gordon James Fishell 1 collaboration

Angelica Foggetti 1 collaboration

Xuefan Gao 1 collaboration

Parviz Ghaderi 1 collaboration

Natalia A Goriounova 1 collaboration

Onur Güntürkün 1 collaboration

Kenta Hagihara 1 collaboration

Vanessa Jane Hall 1 collaboration

Moritz Helmstaedter 1 collaboration

Suzana Herculano-Houzel 1 collaboration

Markus M Hilscher 1 collaboration

Hajime Hirase 1 collaboration

Jens Hjerling-Leffler 1 collaboration

Josh Huang 1 collaboration

Rafiq Huda 1 collaboration

Konstantin Khodosevich 1 collaboration

Ole Kiehn 1 collaboration

Henner Koch 1 collaboration

Eric S Kuebler 1 collaboration

Malte Kühnemund 1 collaboration

Pedro Larrañaga 1 collaboration

Emma Louise Louth 1 collaboration

Jan H Lui 1 collaboration

Huibert D Mansvelder 1 collaboration

Oscar Marin 1 collaboration

Julio Martinez-Trujillo 1 collaboration

Homeira Moradi Chameh 1 collaboration

Alok Nath Mohapatra 1 collaboration

Hermany Munguba 1 collaboration

Maiken Nedergaard 1 collaboration

Pavel Němec 1 collaboration

Netanel Ofer 1 collaboration

Ulrich Gottfried Pfisterer 1 collaboration

Samuel Pontes 1 collaboration

William Redmond 1 collaboration

Jean Rossier 1 collaboration

Joshua R Sanes 1 collaboration

Esther Serrano-Saiz 1 collaboration

Jochen F Staiger 1 collaboration

Peter Somogyi 1 collaboration

Gábor Tamás 1 collaboration

Andreas Savas Tolias 1 collaboration

Maria Antonietta Tosches 1 collaboration

Miguel Turrero García 1 collaboration

Christian Wozny 1 collaboration

Thomas V Wuttke 1 collaboration

Yong Liu 1 collaboration

Juan Yuan 1 collaboration

Rebecca D Hodge 1 collaboration

Trygve E Bakken 1 collaboration

Kimberly A Smith 1 collaboration

Eliza R Barkan 1 collaboration

Lucas T Graybuck 1 collaboration

Jennie L Close 1 collaboration

Brian Long 1 collaboration

Nelson Johansen 1 collaboration

Osnat Penn 1 collaboration

Boaz P Levi 1 collaboration

Soraya I Shehata 1 collaboration

Allison Beller 1 collaboration

Darren Bertagnolli 1 collaboration

Krissy Brouner 1 collaboration

Tamara Casper 1 collaboration

Charles Cobbs 1 collaboration

Rachel Dalley 1 collaboration

Nick Dee 1 collaboration

Richard G Ellenbogen 1 collaboration

Olivia Fong 1 collaboration

Emma Garren 1 collaboration

Jeff Goldy 1 collaboration

Ryder P Gwinn 1 collaboration

Daniel Hirschstein 1 collaboration

C Dirk Keene 1 collaboration

Andrew L Ko 1 collaboration

Kanan Lathia 1 collaboration

Ahmed Mahfouz 1 collaboration

Zoe Maltzer 1 collaboration

Medea McGraw 1 collaboration

Thuc Nghi Nguyen 1 collaboration

Julie Nyhus 1 collaboration

Jeffrey G Ojemann 1 collaboration

Aaron Oldre 1 collaboration

Sheana Parry 1 collaboration

Shannon Reynolds 1 collaboration

Christine Rimorin 1 collaboration

Nadiya V Shapovalova 1 collaboration

Saroja Somasundaram 1 collaboration

Aaron Szafer 1 collaboration

Elliot R Thomsen 1 collaboration

Michael Tieu 1 collaboration

Gerald Quon 1 collaboration

Susan M Sunkin 1 collaboration

David Feng 1 collaboration

Amy Bernard 1 collaboration

John W Phillips 1 collaboration

Bosiljka Tasic 1 collaboration

Allan R Jones 1 collaboration

Christof Koch 1 collaboration

Ed S Lein 1 collaboration

Alexander Vieth 1 collaboration

Baldur van Lew 1 collaboration

Soumyadeep Basu 1 collaboration

Elmar Eisemann 1 collaboration

Anna Vilanova 1 collaboration

Maryann E Martone 1 collaboration

Jan G Bjaalie 1 collaboration

Hong-Wei Dong 1 collaboration

Satrajit S Ghosh 1 collaboration

Jesse Gillis 1 collaboration

Ronna Hertzano 1 collaboration

David R Haynor 1 collaboration

Patrick R Hof 1 collaboration

Yongsoo Kim 1 collaboration

Yufeng Liu 1 collaboration

Partha P Mitra 1 collaboration

Eran Mukamel 1 collaboration

David Osumi-Sutherland 1 collaboration

Hanchuan Peng 1 collaboration

Patrick L Ray 1 collaboration

Raymond Sanchez 1 collaboration

Aviv Regev 1 collaboration

Alex Ropelewski 1 collaboration

Shawn Zheng Kai Tan 1 collaboration

Carol L Thompson 1 collaboration

Timothy Tickle 1 collaboration

Hagen Tilgner 1 collaboration

Merina Varghese 1 collaboration

Brock Wester 1 collaboration

Owen White 1 collaboration

David Allemang 1 collaboration

Seth Ament 1 collaboration

Thomas L Athey 1 collaboration

Cody Baker 1 collaboration

Katherine S Baker 1 collaboration

Pamela M Baker 1 collaboration

Anita Bandrowski 1 collaboration

Samik Banerjee 1 collaboration

Prajal Bishwakarma 1 collaboration

Ambrose Carr 1 collaboration

Min Chen 1 collaboration

Roni Choudhury 1 collaboration

Jonah Cool 1 collaboration

Heather Creasy 1 collaboration

Florence D'Orazi 1 collaboration

Kylee Degatano 1 collaboration

Benjamin Dichter 1 collaboration

Tim Dolbeare 1 collaboration

Joseph R Ecker 1 collaboration

Rongxin Fang 1 collaboration

Jean-Christophe Fillion-Robin 1 collaboration

Timothy P Fliss 1 collaboration

James Gee 1 collaboration

Tom Gillespie 1 collaboration

Nathan Gouwens 1 collaboration

Guo-Qiang Zhang 1 collaboration

Yaroslav O Halchenko 1 collaboration

Nomi L Harris 1 collaboration

Brian R Herb 1 collaboration

Houri Hintiryan 1 collaboration

Gregory Hood 1 collaboration

Sam Horvath 1 collaboration

Bingxing Huo 1 collaboration

Dorota Jarecka 1 collaboration

Shengdian Jiang 1 collaboration

Farzaneh Khajouei 1 collaboration

Elizabeth A Kiernan 1 collaboration

Huseyin Kir 1 collaboration

Lauren Kruse 1 collaboration

Changkyu Lee 1 collaboration

Yang Li 1 collaboration

Hanqing Liu 1 collaboration

Lijuan Liu 1 collaboration

Anup Markuhar 1 collaboration

James Mathews 1 collaboration

Kaylee L Mathews 1 collaboration

Chris Mezias 1 collaboration

Michael I Miller 1 collaboration

Tyler Mollenkopf 1 collaboration

Shoaib Mufti 1 collaboration

Christopher J Mungall 1 collaboration

Joshua Orvis 1 collaboration

Maja A Puchades 1 collaboration

Lei Qu 1 collaboration

Joseph P Receveur 1 collaboration

Bing Ren 1 collaboration

Nathan Sjoquist 1 collaboration

Brian Staats 1 collaboration

Daniel Tward 1 collaboration

Cindy T J van Velthoven 1 collaboration

Quanxin Wang 1 collaboration

Fangming Xie 1 collaboration

Hua Xu 1 collaboration

Zhixi Yun 1 collaboration

Yun Renee Zhang 1 collaboration

W Jim Zheng 1 collaboration

Brian Zingg 1 collaboration

Ximaine van der Burg 1 collaboration

Louise van der Weerd 1 collaboration

Antonios Somarakis 1 collaboration

Vincent Van Unen 1 collaboration

Nannan Guo 1 collaboration

Na Li 1 collaboration

Li Jia 1 collaboration

Qinyue Jiang 1 collaboration

Mette Schreurs 1 collaboration

Vincent van Unen 1 collaboration

Susana M Chuva de Sousa Lopes 1 collaboration

Alexandra A Vloemans 1 collaboration

Frank J T Staal 1 collaboration

Noel F C C de Miranda 1 collaboration

M Fernanda Pascutti 1 collaboration

Yun Zhang 1 collaboration

Mark Novotny 1 collaboration

Trygve Bakken 1 collaboration

Jeremy Miller 1 collaboration