Azhar Khandekar

Affiliations

Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.
Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
Moores Cancer Center, University of California San Diego, La Jolla, CA, USA.
Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, USA.

Publications (22)

Failure Mode and Effects Analysis (FMEA) for Immunogenicity of Therapeutic Proteins.

Journal of pharmaceutical sciences

Avec: Narendra Chirmule , Ravindra Khare , Atul Khandekar , Vibha Jawa

A cryptic new species of rupicolous Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) allied to H. aaronbaueri Giri, 2008 from the northern Western Ghats of Maharashtra, India.

Zootaxa

Avec: Akshay Khandekar , Tejas Thackeray , Ishan Agarwal

A new large-bodied, rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) allied to Cnemaspis heteropholis Bauer, 2002 from the Central Western Ghats of Karnataka, India.

Zootaxa

Avec: Akshay Khandekar , Tejas Thackeray , Saunak Pal , Ishan Agarwal

Mapping clustered mutations in cancer reveals APOBEC3 mutagenesis of ecDNA.

Nature

Avec: Erik N Bergstrom , Jens Luebeck , Mia Petljak , Azhar Khandekar , Mark Barnes , Tongwu Zhang , Christopher D Steele , Nischalan Pillay , Maria Teresa Landi , Vineet Bafna , Paul S Mischel , Reuben S Harris , Ludmil B Alexandrov

Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator.

bioRxiv : the preprint server for biology

Avec: Azhar Khandekar , Raviteja Vangara , Mark Barnes , Marcos Díaz-Gay , Ammal Abbasi , Erik N Bergstrom , Christopher D Steele , Nischalan Pillay , Ludmil B Alexandrov

The mutagenic forces shaping the genomic landscape of lung cancer in never smokers.

medRxiv : the preprint server for health sciences

Avec: Marcos Díaz-Gay , Tongwu Zhang , Phuc H Hoang , Azhar Khandekar , Wei Zhao , Christopher D Steele , Burçak Otlu , Shuvro P Nandi , Raviteja Vangara , Erik N Bergstrom , Mariya Kazachkova , Oriol Pich , Charles Swanton , Chao Agnes Hsiung , I-Shou Chang , Maria Pik Wong , Kin Chung Leung , Jian Sang , John McElderry , Lixing Yang , Martin A Nowak , Jianxin Shi , Nathaniel Rothman , David C Wedge , Robert Homer , Soo-Ryum Yang , Qing Lan , Bin Zhu , Stephen J Chanock , Ludmil B Alexandrov , Maria Teresa Landi

Mutational signatures in esophageal squamous cell carcinoma from eight countries with varying incidence.

Nature genetics

Avec: Sarah Moody , Sergey Senkin , S M Ashiqul Islam , Jingwei Wang , Dariush Nasrollahzadeh , Ricardo Cortez Cardoso Penha , Stephen Fitzgerald , Erik N Bergstrom , Joshua Atkins , Yudou He , Azhar Khandekar , Karl Smith-Byrne , Christine Carreira , Valerie Gaborieau , Calli Latimer , Emily Thomas , Irina Abnizova , Pauline E Bucciarelli , David Jones , Jon W Teague , Behnoush Abedi-Ardekani , Stefano Serra , Jean-Yves Scoazec , Hiva Saffar , Farid Azmoudeh-Ardalan , Masoud Sotoudeh , Arash Nikmanesh , Hossein Poustchi , Ahmadreza Niavarani , Samad Gharavi , Michael Eden , Paul Richman , Lia S Campos , Rebecca C Fitzgerald , Luis Felipe Ribeiro , Sheila Coelho Soares-Lima , Charles Dzamalala , Blandina Theophil Mmbaga , Tatsuhiro Shibata , Diana Menya , Alisa M Goldstein , Nan Hu , Reza Malekzadeh , Abdolreza Fazel , Valerie McCormack , James McKay , Sandra Perdomo , Ghislaine Scelo , Estelle Chanudet , Laura Humphreys , Ludmil B Alexandrov , Paul Brennan , Michael R Stratton

A new species of South Asian Cnemaspis (Squamata: Gekkonidae) from the Eastern Ghats, India.

Zootaxa

Avec: Ishan Agarwal , Aaron M Bauer , Akshay Khandekar

Delineation of submarine groundwater discharge and seawater intrusion zones using anomalies in the field water quality parameters, groundwater level fluctuation and sea surface temperature along the Gujarat coast of India.

Journal of environmental management

Avec: Chandrashekhar Bhagat , Ashwini Khandekar , Ashwin Singh , Pranab Kumar Mohapatra , Manish Kumar

Congenital Measles in a Premature 25-week Gestation Infant.

The Pediatric infectious disease journal

Avec: Erin Hanft , Sandhya Brachio , Maria Messina , Philip Zachariah , Desmond Sutton , Dena Goffman , Janett Pike , Lesley Covington , Krishika A Graham , Bindy Crouch , Eleanor Adams , Nina Ahmad , Elizabeth Rausch-Phung , Karen Southwick , Patrick Bryant , Meghan Fuschino , Anagha Khandekar , Karen Kulas , Lisa Saiman

Uncovering novel mutational signatures by

Cell genomics

Avec: S M Ashiqul Islam , Marcos Díaz-Gay , Yang Wu , Mark Barnes , Raviteja Vangara , Erik N Bergstrom , Yudou He , Mike Vella , Jingwei Wang , Jon W Teague , Peter Clapham , Sarah Moody , Sergey Senkin , Yun Rose Li , Laura Riva , Tongwu Zhang , Andreas J Gruber , Christopher D Steele , Burçak Otlu , Azhar Khandekar , Ammal Abbasi , Laura Humphreys , Natalia Syulyukina , Samuel W Brady , Boian S Alexandrov , Nischalan Pillay , Jinghui Zhang , David J Adams , Iñigo Martincorena , David C Wedge , Maria Teresa Landi , Paul Brennan , Michael R Stratton , Steven G Rozen , Ludmil B Alexandrov

Development of a rapid and ultra-sensitive RNA:DNA hybrid immunocapture based biosensor for visual detection of SARS-CoV-2 RNA.

PNAS nexus

Avec: Anusree Dey , Jyoti Prakash , Rituparna Das , Sandeep Shelar , Ajay Saini , Susan Cherian , Sofia C Patel , Puthusserickal A Hassan , Ashwini Khandekar , Kinshuk Dasgupta , Hari Sharan Misra , Sheetal Uppal

Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.

Nature genetics

Avec: Lise Mangiante , Nicolas Alcala , Alexandra Sexton-Oates , Alex Di Genova , Abel Gonzalez-Perez , Azhar Khandekar , Erik N Bergstrom , Jaehee Kim , Xiran Liu , Ricardo Blazquez-Encinas , Colin Giacobi , Nolwenn Le Stang , Sandrine Boyault , Cyrille Cuenin , Severine Tabone-Eglinger , Francesca Damiola , Catherine Voegele , Maude Ardin , Marie-Cecile Michallet , Lorraine Soudade , Tiffany M Delhomme , Arnaud Poret , Marie Brevet , Marie-Christine Copin , Sophie Giusiano-Courcambeck , Diane Damotte , Cecile Girard , Veronique Hofman , Paul Hofman , Jérôme Mouroux , Charlotte Cohen , Stephanie Lacomme , Julien Mazieres , Vincent Thomas de Montpreville , Corinne Perrin , Gaetane Planchard , Nathalie Rousseau , Isabelle Rouquette , Christine Sagan , Arnaud Scherpereel , Francoise Thivolet , Jean-Michel Vignaud , Didier Jean , Anabelle Gilg Soit Ilg , Robert Olaso , Vincent Meyer , Anne Boland-Auge , Jean-Francois Deleuze , Janine Altmuller , Peter Nuernberg , Alejandro Ibáñez-Costa , Justo P Castaño , Sylvie Lantuejoul , Akram Ghantous , Charles Maussion , Pierre Courtiol , Hector Hernandez-Vargas , Christophe Caux , Nicolas Girard , Nuria Lopez-Bigas , Ludmil B Alexandrov , Françoise Galateau-Salle , Matthieu Foll , Lynnette Fernandez-Cuesta

Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator.

BMC genomics

Avec: Azhar Khandekar , Raviteja Vangara , Mark Barnes , Marcos Díaz-Gay , Ammal Abbasi , Erik N Bergstrom , Christopher D Steele , Nischalan Pillay , Ludmil B Alexandrov

Geographic variation of mutagenic exposures in kidney cancer genomes.

Nature

Avec: Sergey Senkin , Sarah Moody , Marcos Díaz-Gay , Behnoush Abedi-Ardekani , Thomas Cattiaux , Aida Ferreiro-Iglesias , Jingwei Wang , Stephen Fitzgerald , Mariya Kazachkova , Raviteja Vangara , Anh Phuong Le , Erik N Bergstrom , Azhar Khandekar , Burçak Otlu , Saamin Cheema , Calli Latimer , Emily Thomas , Joshua Ronald Atkins , Karl Smith-Byrne , Ricardo Cortez Cardoso Penha , Christine Carreira , Priscilia Chopard , Valérie Gaborieau , Pekka Keski-Rahkonen , David Jones , Jon W Teague , Sophie Ferlicot , Mojgan Asgari , Surasak Sangkhathat , Worapat Attawettayanon , Beata Świątkowska , Sonata Jarmalaite , Rasa Sabaliauskaite , Tatsuhiro Shibata , Akihiko Fukagawa , Dana Mates , Viorel Jinga , Stefan Rascu , Mirjana Mijuskovic , Slavisa Savic , Sasa Milosavljevic , John M S Bartlett , Monique Albert , Larry Phouthavongsy , Patricia Ashton-Prolla , Mariana R Botton , Brasil Silva Neto , Stephania Martins Bezerra , Maria Paula Curado , Stênio de Cássio Zequi , Rui Manuel Reis , Eliney Ferreira Faria , Nei Soares de Menezes , Renata Spagnoli Ferrari , Rosamonde E Banks , Naveen S Vasudev , David Zaridze , Anush Mukeriya , Oxana Shangina , Vsevolod Matveev , Lenka Foretova , Marie Navratilova , Ivana Holcatova , Anna Hornakova , Vladimir Janout , Mark P Purdue , Nathaniel Rothman , Stephen J Chanock , Per Magne Ueland , Mattias Johansson , James McKay , Ghislaine Scelo , Estelle Chanudet , Laura Humphreys , Ana Carolina de Carvalho , Sandra Perdomo , Ludmil B Alexandrov , Michael R Stratton , Paul Brennan

Two new species of the

ZooKeys

Avec: Akshay Khandekar , Tejas Thackeray , Ishan Agarwal

A novel, diminutive Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from a sacred grove in Odisha, eastern India.

Zootaxa

Avec: Pratyush P Mohapatra , Akshay Khandekar , Sushil K Dutta , Cuckoo Mahapatra , Ishan Agarwal

Asymmetric interspecific competition drives shifts in signalling traits in fan-throated lizards.

Proceedings. Biological sciences

Avec: Amod M Zambre , Akshay Khandekar , Rajesh Sanap , Clairissa O'Brien , Emilie C Snell-Rood , Maria Thaker

Two more new species of Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the northern Western Ghats, Maharashtra, India.

Zootaxa

Avec: Akshay Khandekar , Tejas Thackeray , Ishan Agarwal

Two more new Hemiphyllodactylus Bleeker, 1860 (Squamata: Gekkonidae) from Tamil Nadu, India.

Zootaxa

Avec: Ishan Agarwal , Aaron M Bauer , Saunak Pal , Achyuthan N Srikanthan , Akshay Khandekar

A new medium-sized rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) of the C. bangara clade from granite boulder habitats in Krishnagiri, Tamil Nadu, India.

Zootaxa

Avec: Ishan Agarwal , Tejas Thackeray , Akshay Khandekar

A novel small-bodied rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the northern Western Ghats, Maharashtra, India, with comments on the status of C. indraneildasii, Bauer 2000.

Zootaxa

Avec: Akshay Khandekar , Tejas Thackeray , Ishan Agarwal

Réseau de co-auteurs

Akshay Khandekar 10 collaborations

Ishan Agarwal 9 collaborations

Erik N Bergstrom 8 collaborations

Ludmil B Alexandrov 8 collaborations

Tejas Thackeray 6 collaborations

Christopher D Steele 5 collaborations

Raviteja Vangara 5 collaborations

Marcos Díaz-Gay 5 collaborations

Mark Barnes 4 collaborations

Nischalan Pillay 4 collaborations

Tongwu Zhang 3 collaborations

Maria Teresa Landi 3 collaborations

Ammal Abbasi 3 collaborations

Burçak Otlu 3 collaborations

Sarah Moody 3 collaborations

Sergey Senkin 3 collaborations

Jingwei Wang 3 collaborations

Jon W Teague 3 collaborations

Laura Humphreys 3 collaborations

Paul Brennan 3 collaborations

Michael R Stratton 3 collaborations

Saunak Pal 2 collaborations

Mariya Kazachkova 2 collaborations

Nathaniel Rothman 2 collaborations

David C Wedge 2 collaborations

Stephen J Chanock 2 collaborations

S M Ashiqul Islam 2 collaborations

Ricardo Cortez Cardoso Penha 2 collaborations

Stephen Fitzgerald 2 collaborations

Yudou He 2 collaborations

Karl Smith-Byrne 2 collaborations

Christine Carreira 2 collaborations

Calli Latimer 2 collaborations

Emily Thomas 2 collaborations

David Jones 2 collaborations

Behnoush Abedi-Ardekani 2 collaborations

Tatsuhiro Shibata 2 collaborations

James McKay 2 collaborations

Sandra Perdomo 2 collaborations

Ghislaine Scelo 2 collaborations

Estelle Chanudet 2 collaborations

Aaron M Bauer 2 collaborations

Ashwini Khandekar 2 collaborations

Narendra Chirmule 1 collaboration

Ravindra Khare 1 collaboration

Atul Khandekar 1 collaboration

Vibha Jawa 1 collaboration

Jens Luebeck 1 collaboration

Mia Petljak 1 collaboration

Vineet Bafna 1 collaboration

Paul S Mischel 1 collaboration

Reuben S Harris 1 collaboration

Phuc H Hoang 1 collaboration

Wei Zhao 1 collaboration

Shuvro P Nandi 1 collaboration

Oriol Pich 1 collaboration

Charles Swanton 1 collaboration

Chao Agnes Hsiung 1 collaboration

I-Shou Chang 1 collaboration

Maria Pik Wong 1 collaboration

Kin Chung Leung 1 collaboration

Jian Sang 1 collaboration

John McElderry 1 collaboration

Lixing Yang 1 collaboration

Martin A Nowak 1 collaboration

Jianxin Shi 1 collaboration

Robert Homer 1 collaboration

Soo-Ryum Yang 1 collaboration

Qing Lan 1 collaboration

Bin Zhu 1 collaboration

Dariush Nasrollahzadeh 1 collaboration

Joshua Atkins 1 collaboration

Valerie Gaborieau 1 collaboration

Irina Abnizova 1 collaboration

Pauline E Bucciarelli 1 collaboration

Stefano Serra 1 collaboration

Jean-Yves Scoazec 1 collaboration

Hiva Saffar 1 collaboration

Farid Azmoudeh-Ardalan 1 collaboration

Masoud Sotoudeh 1 collaboration

Arash Nikmanesh 1 collaboration

Hossein Poustchi 1 collaboration

Ahmadreza Niavarani 1 collaboration

Samad Gharavi 1 collaboration

Michael Eden 1 collaboration

Paul Richman 1 collaboration

Lia S Campos 1 collaboration

Rebecca C Fitzgerald 1 collaboration

Luis Felipe Ribeiro 1 collaboration

Sheila Coelho Soares-Lima 1 collaboration

Charles Dzamalala 1 collaboration

Blandina Theophil Mmbaga 1 collaboration

Diana Menya 1 collaboration

Alisa M Goldstein 1 collaboration

Nan Hu 1 collaboration

Reza Malekzadeh 1 collaboration

Abdolreza Fazel 1 collaboration

Valerie McCormack 1 collaboration

Chandrashekhar Bhagat 1 collaboration

Ashwin Singh 1 collaboration

Pranab Kumar Mohapatra 1 collaboration

Manish Kumar 1 collaboration

Erin Hanft 1 collaboration

Sandhya Brachio 1 collaboration

Maria Messina 1 collaboration

Philip Zachariah 1 collaboration

Desmond Sutton 1 collaboration

Dena Goffman 1 collaboration

Janett Pike 1 collaboration

Lesley Covington 1 collaboration

Krishika A Graham 1 collaboration

Bindy Crouch 1 collaboration

Eleanor Adams 1 collaboration

Nina Ahmad 1 collaboration

Elizabeth Rausch-Phung 1 collaboration

Karen Southwick 1 collaboration

Patrick Bryant 1 collaboration

Meghan Fuschino 1 collaboration

Anagha Khandekar 1 collaboration

Karen Kulas 1 collaboration

Lisa Saiman 1 collaboration

Yang Wu 1 collaboration

Mike Vella 1 collaboration

Peter Clapham 1 collaboration

Yun Rose Li 1 collaboration

Laura Riva 1 collaboration

Andreas J Gruber 1 collaboration

Natalia Syulyukina 1 collaboration

Samuel W Brady 1 collaboration

Boian S Alexandrov 1 collaboration

Jinghui Zhang 1 collaboration

David J Adams 1 collaboration

Iñigo Martincorena 1 collaboration

Steven G Rozen 1 collaboration

Anusree Dey 1 collaboration

Jyoti Prakash 1 collaboration

Rituparna Das 1 collaboration

Sandeep Shelar 1 collaboration

Ajay Saini 1 collaboration

Susan Cherian 1 collaboration

Sofia C Patel 1 collaboration

Puthusserickal A Hassan 1 collaboration

Kinshuk Dasgupta 1 collaboration

Hari Sharan Misra 1 collaboration

Sheetal Uppal 1 collaboration

Lise Mangiante 1 collaboration

Nicolas Alcala 1 collaboration

Alexandra Sexton-Oates 1 collaboration

Alex Di Genova 1 collaboration

Abel Gonzalez-Perez 1 collaboration

Jaehee Kim 1 collaboration

Xiran Liu 1 collaboration

Ricardo Blazquez-Encinas 1 collaboration

Colin Giacobi 1 collaboration

Nolwenn Le Stang 1 collaboration

Sandrine Boyault 1 collaboration

Cyrille Cuenin 1 collaboration

Severine Tabone-Eglinger 1 collaboration

Francesca Damiola 1 collaboration

Catherine Voegele 1 collaboration

Maude Ardin 1 collaboration

Marie-Cecile Michallet 1 collaboration

Lorraine Soudade 1 collaboration

Tiffany M Delhomme 1 collaboration

Arnaud Poret 1 collaboration

Marie Brevet 1 collaboration

Marie-Christine Copin 1 collaboration

Sophie Giusiano-Courcambeck 1 collaboration

Diane Damotte 1 collaboration

Cecile Girard 1 collaboration

Veronique Hofman 1 collaboration

Paul Hofman 1 collaboration

Jérôme Mouroux 1 collaboration

Charlotte Cohen 1 collaboration

Stephanie Lacomme 1 collaboration

Julien Mazieres 1 collaboration

Vincent Thomas de Montpreville 1 collaboration

Corinne Perrin 1 collaboration

Gaetane Planchard 1 collaboration

Nathalie Rousseau 1 collaboration

Isabelle Rouquette 1 collaboration

Christine Sagan 1 collaboration

Arnaud Scherpereel 1 collaboration

Francoise Thivolet 1 collaboration

Jean-Michel Vignaud 1 collaboration

Didier Jean 1 collaboration

Anabelle Gilg Soit Ilg 1 collaboration

Robert Olaso 1 collaboration

Vincent Meyer 1 collaboration

Anne Boland-Auge 1 collaboration

Jean-Francois Deleuze 1 collaboration

Janine Altmuller 1 collaboration

Peter Nuernberg 1 collaboration

Alejandro Ibáñez-Costa 1 collaboration

Justo P Castaño 1 collaboration

Sylvie Lantuejoul 1 collaboration

Akram Ghantous 1 collaboration

Charles Maussion 1 collaboration

Pierre Courtiol 1 collaboration

Hector Hernandez-Vargas 1 collaboration

Christophe Caux 1 collaboration

Nicolas Girard 1 collaboration

Nuria Lopez-Bigas 1 collaboration

Françoise Galateau-Salle 1 collaboration

Matthieu Foll 1 collaboration

Lynnette Fernandez-Cuesta 1 collaboration

Thomas Cattiaux 1 collaboration

Aida Ferreiro-Iglesias 1 collaboration

Anh Phuong Le 1 collaboration

Saamin Cheema 1 collaboration

Joshua Ronald Atkins 1 collaboration

Priscilia Chopard 1 collaboration

Valérie Gaborieau 1 collaboration

Pekka Keski-Rahkonen 1 collaboration

Sophie Ferlicot 1 collaboration

Mojgan Asgari 1 collaboration

Surasak Sangkhathat 1 collaboration

Worapat Attawettayanon 1 collaboration

Beata Świątkowska 1 collaboration

Sonata Jarmalaite 1 collaboration

Rasa Sabaliauskaite 1 collaboration

Akihiko Fukagawa 1 collaboration

Dana Mates 1 collaboration

Viorel Jinga 1 collaboration

Stefan Rascu 1 collaboration

Mirjana Mijuskovic 1 collaboration

Slavisa Savic 1 collaboration

Sasa Milosavljevic 1 collaboration

John M S Bartlett 1 collaboration

Monique Albert 1 collaboration

Larry Phouthavongsy 1 collaboration

Patricia Ashton-Prolla 1 collaboration

Mariana R Botton 1 collaboration

Brasil Silva Neto 1 collaboration

Stephania Martins Bezerra 1 collaboration

Maria Paula Curado 1 collaboration

Stênio de Cássio Zequi 1 collaboration

Rui Manuel Reis 1 collaboration

Eliney Ferreira Faria 1 collaboration

Nei Soares de Menezes 1 collaboration

Renata Spagnoli Ferrari 1 collaboration

Rosamonde E Banks 1 collaboration

Naveen S Vasudev 1 collaboration

David Zaridze 1 collaboration

Anush Mukeriya 1 collaboration

Oxana Shangina 1 collaboration

Vsevolod Matveev 1 collaboration

Lenka Foretova 1 collaboration

Marie Navratilova 1 collaboration

Ivana Holcatova 1 collaboration

Anna Hornakova 1 collaboration

Vladimir Janout 1 collaboration

Mark P Purdue 1 collaboration

Per Magne Ueland 1 collaboration

Mattias Johansson 1 collaboration

Ana Carolina de Carvalho 1 collaboration

Pratyush P Mohapatra 1 collaboration

Sushil K Dutta 1 collaboration

Cuckoo Mahapatra 1 collaboration

Amod M Zambre 1 collaboration

Rajesh Sanap 1 collaboration

Clairissa O'Brien 1 collaboration

Emilie C Snell-Rood 1 collaboration

Maria Thaker 1 collaboration

Achyuthan N Srikanthan 1 collaboration